DY257145
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY257145 vs. ExPASy Swiss-Prot
Match: RD23D_ARATH (Putative DNA repair protein RAD23-4 OS=Arabidopsis thaliana GN=RAD23-4 PE=2 SV=2) HSP 1 Score: 264.618 bits (675), Expect = 2.855e-91 Identity = 133/179 (74.30%), Postives = 147/179 (82.12%), Query Frame = 1 Query: 199 VYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSXXXXXXXXXXXXXXSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQG 735 VYG AASNLVAG LE +QQILDMGGG+WDRDTVVRALRAA+NNPERAVEYLYSGIP QAE+ PVA+AP G+ A + + GPNANPL+LFPQG+P +G AGAG+LDFLRNS QFQ LRAMVQANPQ+LQPMLQELGKQNPQLVRLIQEHQADFLRLINEPV+G Sbjct: 134 VYGQAASNLVAGTTLESTVQQILDMGGGSWDRDTVVRALRAAFNNPERAVEYLYSGIPAQAEIPPVAQAPATGEQAANPLAQPQQAAAPAAATGGPNANPLNLFPQGMPAADAG-AGAGNLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVEG 311 HSP 2 Score: 59.3066 bits (142), Expect = 2.855e-91 Identity = 27/36 (75.00%), Postives = 30/36 (83.33%), Query Frame = 2 Query: 818 GNGL*SSNVLKVFFACNKNEELAXNYLLEHMHEFED 925 G G + VL+VFFACNKNEELA NYLL+HMHEFED Sbjct: 342 GMGFDRAMVLEVFFACNKNEELAANYLLDHMHEFED 377 HSP 3 Score: 55.8398 bits (133), Expect = 2.855e-91 Identity = 26/36 (72.22%), Postives = 30/36 (83.33%), Query Frame = 3 Query: 735 NLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAM 842 N+ +QL MPQ++ VTPEEREAIERLE MGFDRAM Sbjct: 314 NVMEQLEAAMPQAVTVTPEEREAIERLEGMGFDRAM 349
BLAST of DY257145 vs. ExPASy Swiss-Prot
Match: RD23C_ARATH (Putative DNA repair protein RAD23-3 OS=Arabidopsis thaliana GN=RAD23-3 PE=2 SV=2) HSP 1 Score: 261.536 bits (667), Expect = 8.012e-88 Identity = 137/180 (76.11%), Postives = 149/180 (82.78%), Query Frame = 1 Query: 199 VYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGN-GQAANSXXXXXXXXXXXXXXSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQG 735 VYG AASNL AG+NLE IQQILDMGGGTWDR+TVV ALRAA+NNPERAVEYLY+GIPEQAEV PVAR P + GQ AN +SGPNANPLDLFPQGLP+VG G GAG+LDFLRNS QFQ LRAMVQANPQ+LQPMLQELGKQNP L+RLIQ+HQADFLRLINEPV+G Sbjct: 173 VYGQAASNLAAGSNLESTIQQILDMGGGTWDRETVVLALRAAFNNPERAVEYLYTGIPEQAEVPPVARPPASAGQPAN---PPAQTQQPAAAPASGPNANPLDLFPQGLPNVG-GNPGAGTLDFLRNSQQFQALRAMVQANPQVLQPMLQELGKQNPNLMRLIQDHQADFLRLINEPVEG 348 HSP 2 Score: 56.225 bits (134), Expect = 8.012e-88 Identity = 24/28 (85.71%), Postives = 27/28 (96.43%), Query Frame = 2 Query: 842 VLKVFFACNKNEELAXNYLLEHMHEFED 925 VL+VFFACNKNEELA NYLL+HMHEFE+ Sbjct: 392 VLEVFFACNKNEELAANYLLDHMHEFEE 419 HSP 3 Score: 50.447 bits (119), Expect = 8.012e-88 Identity = 26/36 (72.22%), Postives = 30/36 (83.33%), Query Frame = 3 Query: 738 LGDQLAGL-MPQSIQVTPEEREAIERLEAMGFDRAM 842 LG AG+ PQ+IQVT EEREAIERLEAMGF+RA+ Sbjct: 356 LGQMAAGMPQPQAIQVTHEEREAIERLEAMGFERAL 391
BLAST of DY257145 vs. ExPASy Swiss-Prot
Match: RAD23_ORYSJ (Probable DNA repair protein RAD23 OS=Oryza sativa subsp. japonica GN=RAD23 PE=1 SV=2) HSP 1 Score: 215.698 bits (548), Expect = 1.160e-72 Identity = 110/180 (61.11%), Postives = 134/180 (74.44%), Query Frame = 1 Query: 202 YGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAE--VQPVARAPGNGQAANSXXXXXXXXXXXXXXSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQG 735 YG A SNLVAG+NLE IQ IL+MGGG WDRD V+ AL AA+NNPERAVEYLYSG+PEQ + V P + P N A+ SSGPNA+PLDLFPQ LP+ + AAG G+LD LRN+ QF+ L ++VQANPQ+LQP+LQELGKQNPQ+++LIQE+QA+FL LINEP +G Sbjct: 145 YGQATSNLVAGSNLEATIQSILEMGGGIWDRDIVLHALSAAFNNPERAVEYLYSGVPEQMDIPVPPPSIQPANPTQASQATQPAAPSIL----SSGPNASPLDLFPQALPNASTDAAGLGNLDALRNNAQFRTLLSLVQANPQILQPLLQELGKQNPQILQLIQENQAEFLHLINEPAEG 320 HSP 2 Score: 51.6026 bits (122), Expect = 1.160e-72 Identity = 26/36 (72.22%), Postives = 28/36 (77.78%), Query Frame = 3 Query: 735 NLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAM 842 NL DQ MPQ+I VTPEE EAI RLEAMGFDRA+ Sbjct: 325 NLLDQFPEAMPQTIAVTPEENEAILRLEAMGFDRAL 360 HSP 3 Score: 50.0618 bits (118), Expect = 1.160e-72 Identity = 21/28 (75.00%), Postives = 26/28 (92.86%), Query Frame = 2 Query: 842 VLKVFFACNKNEELAXNYLLEHMHEFED 925 VL VFFACNK+E+LA NYLL+HM+EF+D Sbjct: 361 VLDVFFACNKDEQLAANYLLDHMNEFDD 388
BLAST of DY257145 vs. ExPASy Swiss-Prot
Match: RD23A_ARATH (Putative DNA repair protein RAD23-1 OS=Arabidopsis thaliana GN=RAD23-1 PE=2 SV=3) HSP 1 Score: 206.838 bits (525), Expect = 1.870e-52 Identity = 107/181 (59.12%), Postives = 136/181 (75.14%), Query Frame = 1 Query: 202 YGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQ---PVARAPGNGQAANSXXXXXXXXXXXXXXSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQG 735 YG AAS LV+G++LE +QQI++MGGG+WD++TV RALRAAYNNPERAV+YLYSGIP+ AEV P A+ G+G A + S GPN++PLDLFPQ +G+ G+L+FLRN+ QFQ LR MV +NPQ+LQPMLQELGKQNPQL+RLIQE+QA+FL+L+NEP +G Sbjct: 135 YGQAASTLVSGSSLEQMVQQIMEMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPQTAEVAVPVPEAQIAGSGAAPVAPA------------SGGPNSSPLDLFPQETV-AAAGSGDLGTLEFLRNNDQFQQLRTMVHSNPQILQPMLQELGKQNPQLLRLIQENQAEFLQLVNEPYEG 302
BLAST of DY257145 vs. ExPASy Swiss-Prot
Match: RD23B_ARATH (Putative DNA repair protein RAD23-2 OS=Arabidopsis thaliana GN=RAD23-2 PE=2 SV=2) HSP 1 Score: 198.364 bits (503), Expect = 6.650e-50 Identity = 104/180 (57.78%), Postives = 131/180 (72.78%), Query Frame = 1 Query: 202 YGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSXXXXXXXXXXXXXXSSGPNANPLDLFPQGLPDVGSGAAGA--GSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQG 735 YG AAS LV+G+++E +QQI++MGGG+WD++TV RALRAAYNNPERAV+YLYSGIPE + P G G S GPN++PLDLFPQ + S AAG G+L+FLR + QFQ LR+MV +NPQ+LQPMLQELGKQNPQL+RLIQE+QA+FL+L+NEP +G Sbjct: 133 YGQAASTLVSGSSIEQMVQQIMEMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPETVTI-PATNLSGVGSGRE---------LTAPPPSGGPNSSPLDLFPQ---EAVSDAAGGDLGTLEFLRGNDQFQQLRSMVNSNPQILQPMLQELGKQNPQLLRLIQENQAEFLQLLNEPYEG 299
BLAST of DY257145 vs. ExPASy Swiss-Prot
Match: RD23B_HUMAN (UV excision repair protein RAD23 homolog B OS=Homo sapiens GN=RAD23B PE=1 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 5.042e-31 Identity = 67/182 (36.81%), Postives = 103/182 (56.59%), Query Frame = 1 Query: 199 VYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSXXXXXXXXXXXXXXSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGIWG 744 ++ A S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GIP E Q V P QAA++ ++ + ++G L+FLRN PQFQ +R ++Q NP LL +LQ++G++NPQL++ I +HQ F++++NEPVQ G Sbjct: 176 LFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPP---QAASTGAPQSSAVAAAAATTTATTT--------------TTSSGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGG 337 HSP 2 Score: 36.965 bits (84), Expect = 5.042e-31 Identity = 17/37 (45.95%), Postives = 25/37 (67.57%), Query Frame = 3 Query: 774 IQVTPEEREAIERLEAMGFDRAMY*RCSLPATRMKNL 884 IQVTP+E+EAIERL+A+GF + + + +NL Sbjct: 360 IQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENL 396
BLAST of DY257145 vs. ExPASy Swiss-Prot
Match: RD23B_BOVIN (UV excision repair protein RAD23 homolog B OS=Bos taurus GN=RAD23B PE=2 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 8.550e-31 Identity = 67/182 (36.81%), Postives = 103/182 (56.59%), Query Frame = 1 Query: 199 VYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSXXXXXXXXXXXXXXSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGIWG 744 ++ A S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GIP E Q V P AA++ P ++ + ++G L+FLRN PQFQ +R ++Q NP LL +LQ++G++NPQL++ I +HQ F++++NEPVQ G Sbjct: 176 LFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPP---PAAST---------------GAPQSSVAAAAATTTATTTTTSSGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGG 336 HSP 2 Score: 36.965 bits (84), Expect = 8.550e-31 Identity = 17/37 (45.95%), Postives = 25/37 (67.57%), Query Frame = 3 Query: 774 IQVTPEEREAIERLEAMGFDRAMY*RCSLPATRMKNL 884 IQVTP+E+EAIERL+A+GF + + + +NL Sbjct: 359 IQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENL 395
BLAST of DY257145 vs. ExPASy Swiss-Prot
Match: RD23B_MOUSE (UV excision repair protein RAD23 homolog B OS=Mus musculus GN=Rad23b PE=1 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 1.113e-30 Identity = 65/182 (35.71%), Postives = 100/182 (54.95%), Query Frame = 1 Query: 199 VYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSXXXXXXXXXXXXXXSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGIWG 744 ++ A S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GIP E Q V P + + P + + + +G L+FLRN PQFQ +R ++Q NP LL +LQ++G++NPQL++ I +HQ F++++NEPVQ G Sbjct: 176 LFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPPPQAVSTGT-----------------PQSPAVAAAAATTTATTTTTSGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGG 337 HSP 2 Score: 36.965 bits (84), Expect = 1.113e-30 Identity = 17/37 (45.95%), Postives = 25/37 (67.57%), Query Frame = 3 Query: 774 IQVTPEEREAIERLEAMGFDRAMY*RCSLPATRMKNL 884 IQVTP+E+EAIERL+A+GF + + + +NL Sbjct: 367 IQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENL 403
BLAST of DY257145 vs. ExPASy Swiss-Prot
Match: RD23B_RAT (UV excision repair protein RAD23 homolog B OS=Rattus norvegicus GN=Rad23b PE=1 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 1.113e-30 Identity = 65/182 (35.71%), Postives = 100/182 (54.95%), Query Frame = 1 Query: 199 VYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSXXXXXXXXXXXXXXSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGIWG 744 ++ A S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GIP E Q V P + + P + + + +G L+FLRN PQFQ +R ++Q NP LL +LQ++G++NPQL++ I +HQ F++++NEPVQ G Sbjct: 176 LFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPPPQAVSTGT-----------------PQSPAVAAAAATTTATTTTTSGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGG 337 HSP 2 Score: 36.965 bits (84), Expect = 1.113e-30 Identity = 17/37 (45.95%), Postives = 25/37 (67.57%), Query Frame = 3 Query: 774 IQVTPEEREAIERLEAMGFDRAMY*RCSLPATRMKNL 884 IQVTP+E+EAIERL+A+GF + + + +NL Sbjct: 366 IQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENL 402
BLAST of DY257145 vs. ExPASy Swiss-Prot
Match: RHP23_SCHPO (UV excision repair protein rhp23 OS=Schizosaccharomyces pombe GN=rhp23 PE=1 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 3.008e-29 Identity = 62/180 (34.44%), Postives = 92/180 (51.11%), Query Frame = 1 Query: 214 ASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSXXXXXXXXXXXXXXSSGPNANPLDLFPQGL------PDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQG 735 A+ L G A++ +++MG ++R V RA+RAA+NNP+RAVEYL +GIPE N Q S + P +LF Q + S G L FLR+ PQFQ LR +VQ NPQ+L+ +LQ++G+ +P L + I ++ FL+L+ E +G Sbjct: 138 ANTLAVGAQRNVAVENMVEMG---YERSEVERAMRAAFNNPDRAVEYLLTGIPEDIL---------NRQREESAAALAAQQQQSEALAPTSTGQPANLFEQAALSENENQEQPSNTVGDDPLGFLRSIPQFQQLRQIVQQNPQMLETILQQIGQGDPALAQAITQNPEAFLQLLAEGAEG 305 HSP 2 Score: 43.5134 bits (101), Expect = 3.008e-29 Identity = 18/28 (64.29%), Postives = 22/28 (78.57%), Query Frame = 2 Query: 842 VLKVFFACNKNEELAXNYLLEHMHEFED 925 V++ + AC+KNEELA NYL EH HE ED Sbjct: 339 VIQAYLACDKNEELAANYLFEHGHESED 366 HSP 3 Score: 30.0314 bits (66), Expect = 3.008e-29 Identity = 13/21 (61.90%), Postives = 17/21 (80.95%), Query Frame = 3 Query: 774 IQVTPEEREAIERLEAMGFDR 836 IQ+T EE E+I+RL +GFDR Sbjct: 316 IQITQEESESIDRLCQLGFDR 336 The following BLAST results are available for this feature:
BLAST of DY257145 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 15
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Sequences
The
following sequences are available for this feature:
EST sequence >DY257145 ID=DY257145; Name=DY257145; organism=Citrus sinensis; type=EST; length=1131bpback to top |