FC871247

Overview
NameFC871247
Unique NameFC871247
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length550
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC871247 vs. ExPASy Swiss-Prot
Match: GLRX_SOLLC (Glutaredoxin OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 8.268e-25
Identity = 52/67 (77.61%), Postives = 62/67 (92.54%), Query Frame = 2
Query:    2 FKAILQNKESDGSDIQSALAEWTGQKTVPHVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAVAKTA 202
            FKA+  + E DGS+IQ+ALAEWTGQ+TVP+VFIG KHIGGCD+TTALHREGKL+PLLTEAGA+AKT+
Sbjct:   40 FKAVELDSEKDGSEIQAALAEWTGQRTVPNVFIGRKHIGGCDATTALHREGKLLPLLTEAGAIAKTS 106          
BLAST of FC871247 vs. ExPASy Swiss-Prot
Match: GLRX_VERFO (Glutaredoxin OS=Vernicia fordii PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.036e-23
Identity = 49/63 (77.78%), Postives = 57/63 (90.48%), Query Frame = 2
Query:    2 FKAILQNKESDGSDIQSALAEWTGQKTVPHVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAV 190
            FK I  + ESDGSD+Q+ALAEWTGQ+TVP+VFIGGKHIGGCD TT +H+EGKL+PLLTEAGAV
Sbjct:   40 FKVIELDSESDGSDLQNALAEWTGQRTVPNVFIGGKHIGGCDKTTGMHQEGKLIPLLTEAGAV 102          
BLAST of FC871247 vs. ExPASy Swiss-Prot
Match: GRXC6_ORYSJ (Glutaredoxin-C6 OS=Oryza sativa subsp. japonica GN=GRXC6 PE=1 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 5.925e-23
Identity = 51/67 (76.12%), Postives = 59/67 (88.06%), Query Frame = 2
Query:    2 FKAILQNKESDGSDIQSALAEWTGQKTVPHVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAVAKTA 202
            FKAI  + ESDGS++QSALAEWTGQ+TVP+VFI GKHIGGCD T AL+ EGKLVPLLTEAGA+A +A
Sbjct:   40 FKAIELDGESDGSELQSALAEWTGQRTVPNVFINGKHIGGCDDTLALNNEGKLVPLLTEAGAIASSA 106          
BLAST of FC871247 vs. ExPASy Swiss-Prot
Match: GRXC2_ARATH (Glutaredoxin-C2 OS=Arabidopsis thaliana GN=GRXC2 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.320e-22
Identity = 51/68 (75.00%), Postives = 60/68 (88.24%), Query Frame = 2
Query:    2 FKAILQNKESDGSDIQSALAEWTGQKTVPHVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAVA-KTA 202
            FKA+  + ESDGS IQS LAEWTGQ+TVP+VFIGG HIGGCD+T+ LH++GKLVPLLTEAGA+A KTA
Sbjct:   40 FKAVELDTESDGSQIQSGLAEWTGQRTVPNVFIGGNHIGGCDATSNLHKDGKLVPLLTEAGAIAGKTA 107          
BLAST of FC871247 vs. ExPASy Swiss-Prot
Match: GLRX_RICCO (Glutaredoxin OS=Ricinus communis PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 3.841e-22
Identity = 48/63 (76.19%), Postives = 57/63 (90.48%), Query Frame = 2
Query:    2 FKAILQNKESDGSDIQSALAEWTGQKTVPHVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAV 190
            +K +  + ESDGS+IQ+ALAEWTGQ+TVP+VFIGGKHIGGCDSTTA H +G+LVPLLTEAGAV
Sbjct:   40 YKVVELDTESDGSEIQTALAEWTGQRTVPNVFIGGKHIGGCDSTTAKHSQGQLVPLLTEAGAV 102          
BLAST of FC871247 vs. ExPASy Swiss-Prot
Match: GRXC4_ORYSJ (Glutaredoxin-C4, chloroplastic OS=Oryza sativa subsp. japonica GN=GRXC4 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.752e-20
Identity = 45/64 (70.31%), Postives = 55/64 (85.94%), Query Frame = 2
Query:    2 FKAILQNKESDGSDIQSALAEWTGQKTVPHVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAVA 193
            +KA+  + ESDGS++QSALA+WTGQ+TVP VFI GKHIGGCD T A+H+ G LVPLLTEAGA+A
Sbjct:   66 YKAVELDVESDGSELQSALADWTGQRTVPCVFIKGKHIGGCDDTMAMHKGGNLVPLLTEAGAIA 129          
BLAST of FC871247 vs. ExPASy Swiss-Prot
Match: GRXC1_ARATH (Glutaredoxin-C1 OS=Arabidopsis thaliana GN=GRXC1 PE=2 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 1.279e-17
Identity = 41/68 (60.29%), Postives = 53/68 (77.94%), Query Frame = 2
Query:    2 FKAILQNKESDGSDIQSALAEWTGQKTVPHVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAVAKTAA 205
            FK +  ++ SDG +IQSAL+EWTGQ TVP+VFI G HIGGCD     +++GKLVPLLTEAGA+A  ++
Sbjct:   56 FKVLELDEMSDGGEIQSALSEWTGQTTVPNVFIKGNHIGGCDRVMETNKQGKLVPLLTEAGAIADNSS 123          
BLAST of FC871247 vs. ExPASy Swiss-Prot
Match: GLRX_DICDI (Glutaredoxin OS=Dictyostelium discoideum GN=grxA PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.559e-13
Identity = 34/53 (64.15%), Postives = 42/53 (79.25%), Query Frame = 2
Query:   26 ESDGSDIQSALAEWTGQKTVPHVFIGGKHIGGCDSTTALHREGKLVPLLTEAG 184
            ESDGS++QSA  + +G +TVP VFI  K IGGCD+TT LH +GKL+PLL EAG
Sbjct:   46 ESDGSELQSAAGQISGVRTVPQVFINEKFIGGCDATTKLHSQGKLIPLLQEAG 98          
The following BLAST results are available for this feature:
BLAST of FC871247 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
GLRX_SOLLC8.268e-2577.61Glutaredoxin OS=Solanum lycopersicum PE=3 SV=1[more]
GLRX_VERFO2.036e-2377.78Glutaredoxin OS=Vernicia fordii PE=3 SV=1[more]
GRXC6_ORYSJ5.925e-2376.12Glutaredoxin-C6 OS=Oryza sativa subsp. japonica GN... [more]
GRXC2_ARATH1.320e-2275.00Glutaredoxin-C2 OS=Arabidopsis thaliana GN=GRXC2 P... [more]
GLRX_RICCO3.841e-2276.19Glutaredoxin OS=Ricinus communis PE=3 SV=1[more]
GRXC4_ORYSJ2.752e-2070.31Glutaredoxin-C4, chloroplastic OS=Oryza sativa sub... [more]
GRXC1_ARATH1.279e-1760.29Glutaredoxin-C1 OS=Arabidopsis thaliana GN=GRXC1 P... [more]
GLRX_DICDI5.559e-1364.15Glutaredoxin OS=Dictyostelium discoideum GN=grxA P... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAK3DF02FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK3DF02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871247 ID=FC871247; Name=FC871247; organism=Citrus sinensis; type=EST; length=550bp
TTTCAAGGCCATCCTACAGAACAAAGAAAGTGATGGAAGTGACATTCAAT
CAGCTCTAGCTGAGTGGACTGGACAGAAAACTGTTCCACATGTCTTCATC
GGAGGGAAACACATTGGTGGCTGCGATTCAACTACTGCACTGCACAGGGA
AGGGAAGCTGGTTCCTCTGCTCACTGAAGCTGGAGCTGTTGCCAAGACAG
CTGCCTGATGGATGGCTATTGTCTGCCTGTTAATTCTAGTAATAAATAAA
GAATGTGTTGGTAGTGCTTAATCTGTCTGAATTAAACATGAAATTATGCT
TATTTGAGTAATTTCCAATGCACTTTTTTGTTCAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAACAAAAAAAAAACAAAAAAAAAAAAAAAA
AAAAAAAACCCCCCCCCCTTTTTTCTCAAAACTGGGTTTAAAAAAAAAAA
TTTTTTTTTTTTTTTTTTGGCCCCAAAGGCCCCTCCCTCCAAAAAAAAAA
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