DY257117

Overview
NameDY257117
Unique NameDY257117
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1303
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RK1_SPIOL (50S ribosomal protein L1, chloroplastic OS=Spinacia oleracea GN=RPL1 PE=1 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 3.723e-55
Identity = 139/302 (46.03%), Postives = 170/302 (56.29%), Query Frame = 3
Query:   93 MATCGTTPSSLMLTYAATPLHPQDXXXXXXXXXXXXXXXAAFSLCTNLSVRGGERRASKWLDLYPLRQNKNGLPGHMLAAASAVQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXISTNPKKGKAALPLKRDRTRSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            MAT    P SL L YA++    Q                   SLC  L++   ER   KW+D    +Q+   +   +LAA +A                                  T PKKGKAALPLK DRTRSKRFLEIQ LRE K+EYDLKTA+SL+KQMSSTKF ETAEAHFRLNIDPKYNDQQLRATVSLPKGTGK+VK+AV AQG+K DEAK A AD+VGG++LIEQIK       +      +   +     + L PR     PK G V P   +  ++FK+ KV++R +  G+
Sbjct:    1 MATAA--PPSLSLCYASSSFQYQQDPSFQTHFKPLLLNS---SLC-RLTLNQRERSCLKWVDFTSQKQSPKSVSFRVLAAVAAEAEVADMEEEEGESGGVATLPSP-----------TKPKKGKAALPLKSDRTRSKRFLEIQKLREIKQEYDLKTALSLMKQMSSTKFVETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKTVKIAVLAQGDKIDEAKAAGADIVGGEELIEQIKGGFMDFDKLIATSDMMA-KVASLGRILGPRGLMPTPKAGTVTPNVAQAVEEFKKGKVEFRVDKTGI 284          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RK1_ARATH (50S ribosomal protein L1, chloroplastic OS=Arabidopsis thaliana GN=RPL1 PE=1 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 1.370e-49
Identity = 111/183 (60.66%), Postives = 131/183 (71.58%), Query Frame = 3
Query:  450 PKKGKAALPLKRDRTRSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            PKKGKAAL LKRDRTRSKRFLEIQ LRE KKEYD+ TAISLLKQ ++T+F E+ EAHFRLNIDPKYNDQQLRATVSLPKGTG++V VAV AQGEK DEAK+A AD+VG DDLIEQIK       +      +   +     K L PR     PK G V    P+  ++FK+ KV++R +  G+
Sbjct:   97 PKKGKAALVLKRDRTRSKRFLEIQKLRETKKEYDVNTAISLLKQTANTRFVESVEAHFRLNIDPKYNDQQLRATVSLPKGTGQTVIVAVLAQGEKVDEAKSAGADIVGSDDLIEQIKGGFMEFDKLIASPDMMV-KVAGLGKILGPRGLMPNPKAGTVTANIPQAIEEFKKGKVEFRADKTGI 278          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RK1_PEA (50S ribosomal protein L1, chloroplastic (Fragment) OS=Pisum sativum GN=RPL1 PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 5.957e-45
Identity = 107/172 (62.21%), Postives = 119/172 (69.19%), Query Frame = 3
Query:  453 KKGKAALPLKRDRTRSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPK----EKFLEPRDSCQIPKLGLVPPTYPRP*KKF 956
            ++GK    LK DR RSKRFLEIQ LRE KKEYDLKTAISL+K+ + TKF ET EAHFRLNIDPKYNDQQLRATVSLPKGTGK +KVAV  QGE+FDEAKNA ADLVGG+DLIEQIK    G  + + L  I      PK     K L PR     PK G V    P+   +F
Sbjct:   42 RQGKLHWRLKSDRVRSKRFLEIQKLRELKKEYDLKTAISLVKETAKTKFVETVEAHFRLNIDPKYNDQQLRATVSLPKGTGKPIKVAVLTQGERFDEAKNAGADLVGGEDLIEQIK---GGFMEFDKL--IASPDMMPKVASLGKILGPRGLMPNPKAGTVTANIPQAIAEF 208          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_CYAP8 (50S ribosomal protein L1 OS=Cyanothece sp. (strain PCC 8801) GN=rplA PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 8.943e-25
Identity = 70/167 (41.92%), Postives = 96/167 (57.49%), Query Frame = 3
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            SKRF E     +  + Y    A+ LLK+ ++ KF E+AEAH RL IDPKY DQQLR TVSLPKGTG+ V+VAV A+GEK  EA NA AD+VG ++LIE+I + +   +       +   +     + L PR     PK G V         +FK  K+++R +  G+
Sbjct:    6 SKRFKEALAKVDQNQTYAPLEALQLLKETATAKFNESAEAHIRLGIDPKYTDQQLRTTVSLPKGTGQEVRVAVIARGEKVQEANNAGADIVGSEELIEEIFKGMMDFEVLIATPDMMP-KVAKLGRLLGPRGLMPSPKGGTVTADLTNAITEFKAGKLEFRADRTGI 171          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_MICAN (50S ribosomal protein L1 OS=Microcystis aeruginosa (strain NIES-843) GN=rplA PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.168e-24
Identity = 74/170 (43.53%), Postives = 99/170 (58.24%), Query Frame = 3
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPKEKF---LEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            S+R  + Q   E K  Y+   A++LLK++++ KF ETAEAH RL IDPKY DQQLR TVSLPKGTG++V+VAV  +GEK  EA NA AD+VG ++LIE+I +   G+     L        P   K    L PR     PK G V         +FK  K+++R +  G+
Sbjct:    6 SRRLRDAQAKVENKA-YEPLEALTLLKELATAKFDETAEAHIRLGIDPKYTDQQLRTTVSLPKGTGRTVRVAVITRGEKVQEANNAGADIVGSEELIEEIAK---GMMDFEVLIATPD-MMPKVAKLGRQLGPRGLMPSPKGGTVTTDLTGAIAEFKAGKLEFRADRTGI 170          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RK1_CYAPA (50S ribosomal protein L1, cyanelle OS=Cyanophora paradoxa GN=rpl1 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 3.398e-24
Identity = 74/173 (42.77%), Postives = 101/173 (58.38%), Query Frame = 3
Query:  489 RTRSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPKEKF---LEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            + RS+R  E+    E ++ Y+   AI LLKQ+S+ KF ET E H RL IDPKYNDQQLRATV+LP GTG++++VAV  +GEK +EA  A ADLVG ++LI++I+    G    +CL        P   K    L PR     PK G V     +    FK  K+++R +  G+
Sbjct:    2 KKRSRRMQELVGKVE-EQLYEPLEAIQLLKQISTAKFIETVEVHCRLGIDPKYNDQQLRATVTLPNGTGQTLRVAVITRGEKINEASTAGADLVGAEELIDEIQN---GRLDFDCLIATPD-MMPQVAKLGRVLGPRGLMPSPKGGTVTFDLAQAINDFKAGKLEFRNDRTGI 169          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_TRIEI (50S ribosomal protein L1 OS=Trichodesmium erythraeum (strain IMS101) GN=rplA PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 4.439e-24
Identity = 67/167 (40.12%), Postives = 100/167 (59.88%), Query Frame = 3
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            S+R  E++   E ++ Y+ K A+ LLK+ ++ KF E AEAH RL IDPKY DQQLR TV+LPKGTG+++++AV A+GEK +EA  A ADL G ++LIEQI + +    +      +   +     + L PR     PK G V     +   +FK  K+++R +  G+
Sbjct:    6 SRRLQELRKKVE-ERPYEPKEALQLLKETATAKFLEAAEAHVRLGIDPKYTDQQLRTTVALPKGTGQTIRIAVIAKGEKVNEALAAGADLAGSEELIEQISKGMMEFDRLIATPDVMP-QVAKLGRLLGPRGLMPSPKGGTVTFDLTKAIDEFKAGKLEFRADRSGI 170          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_KOSOT (50S ribosomal protein L1 OS=Kosmotoga olearia (strain TBF 19.5.1) GN=rplA PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 5.797e-24
Identity = 68/164 (41.46%), Postives = 91/164 (55.49%), Query Frame = 3
Query:  495 RSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPKEKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN 986
            RSKR+LE + L +  K Y +  AI LLKQM S KF E+ E H +  I+P  +DQQ+R T+SLP GTGK+VKV V  +GEK +EAK A AD VG D+LI+QI++       A     +         + L PR     PK G V        K FK  +V+ + +
Sbjct:    4 RSKRYLEARKLVDRTKAYTIDEAIELLKQMPSAKFDESIELHIKTGIEPSKSDQQVRGTISLPHGTGKNVKVLVFTRGEKVEEAKAAGADFVGSDELIQQIQKGWTDFDVAIATPDMMR-EIGRLGRILGPRGLMPSPKAGTVTTDVAEAVKAFKAGRVEIKND 166          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RK1_GRATL (50S ribosomal protein L1, chloroplastic OS=Gracilaria tenuistipitata var. liui GN=rpl1 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 5.797e-24
Identity = 71/171 (41.52%), Postives = 98/171 (57.31%), Query Frame = 3
Query:  489 RTRSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPK-EKFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            + RS+RF  +    E  K Y    A++L+K +S+ KF ETAE H  L +DPKY DQQLR TV LPKGTGK ++VAV  Q  K  EAK++ AD+VGG+DLI++IK+    L     + T +      K  K L P+     PK G V        K+FK  K++Y+ +  G+
Sbjct:    2 KKRSRRFSTLLKQIEADKLYSPLDALNLMKNLSNVKFIETAEVHIVLGLDPKYADQQLRTTVMLPKGTGKIMRVAVITQNNKTHEAKSSGADIVGGEDLIDEIKK--GRLDFDKLIATPDMMMSIAKLGKILGPKGLMPSPKAGTVTHNLITTIKEFKAGKLEYKIDRSGI 170          
BLAST of DY257117 vs. ExPASy Swiss-Prot
Match: RL1_DICT6 (50S ribosomal protein L1 OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=rplA PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 9.888e-24
Identity = 68/170 (40.00%), Postives = 97/170 (57.06%), Query Frame = 3
Query:  495 RSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADLVGGDDLIEQIKRRIPGLQQANCLHTING*RCPPKE--KFLEPRDSCQIPKLGLVPPTYPRP*KKFKREKVKYRQN*HGL 998
            R KR+ ++ +L E  K Y  K A+SL+K++++ KF ET     RL +DP++ DQQ+R TV LP GTGK  KV V A+GEK  EA+ A AD VGG+DL++QI+        A     I G    P    K L PR     PK G V     +  K++K  +V++R + +G+
Sbjct:    4 RGKRYQQLLSLIEKGKLYSPKEAVSLVKKLATAKFDETINLAVRLGVDPRHADQQVRGTVVLPYGTGKEKKVLVFAEGEKAQEAREAGADYVGGEDLVKQIESGWLDFDVAIATPDIMGTLKIPSRLGKILGPRGLMPNPKTGTVTNDIAKAVKEYKAGRVEFRTDRYGI 173          
The following BLAST results are available for this feature:
BLAST of DY257117 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK1_SPIOL3.723e-5546.0350S ribosomal protein L1, chloroplastic OS=Spinaci... [more]
RK1_ARATH1.370e-4960.6650S ribosomal protein L1, chloroplastic OS=Arabido... [more]
RK1_PEA5.957e-4562.2150S ribosomal protein L1, chloroplastic (Fragment)... [more]
RL1_CYAP88.943e-2541.9250S ribosomal protein L1 OS=Cyanothece sp. (strain... [more]
RL1_MICAN1.168e-2443.5350S ribosomal protein L1 OS=Microcystis aeruginosa... [more]
RK1_CYAPA3.398e-2442.7750S ribosomal protein L1, cyanelle OS=Cyanophora p... [more]
RL1_TRIEI4.439e-2440.1250S ribosomal protein L1 OS=Trichodesmium erythrae... [more]
RL1_KOSOT5.797e-2441.4650S ribosomal protein L1 OS=Kosmotoga olearia (str... [more]
RK1_GRATL5.797e-2441.5250S ribosomal protein L1, chloroplastic OS=Gracila... [more]
RL1_DICT69.888e-2440.0050S ribosomal protein L1 OS=Dictyoglomus thermophi... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK1AD02FM2 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257117 ID=DY257117; Name=DY257117; organism=Citrus sinensis; type=EST; length=1303bp
CTTCTTCTCATGATATATTCACTGTTTTGCAAAAATGGAGCTTGTTTACA
ATTTGCCCATGCTCATTAAAGTTCCAATACTGTATCCGCAAAATGGCAAC
ATGTGGCACTACTCCGTCGTCTCTGATGCTAACATACGCCGCCACGCCAT
TACACCCGCAAGACTTGACACCCTCGCTGTCTCTTCTTTCTTTCAAACCC
TCGAAGACTGCAGCTTTCTCACTGTGCACCAACCTCAGCGTTAGAGGAGG
GGAGAGGAGGGCGAGCAAGTGGCTTGATTTGTATCCGCTGAGACAGAACA
AAAATGGGCTTCCTGGACACATGCTGGCGGCTGCTTCTGCTGTCCAAGCT
GATACTGACTTGGCCACTGACGATGTGGAGGACGATACTCAGGGAGGTGC
TGAAGGAGCAACTGCTACTGCTACTGCTACTGCTACTATTTCAACTAATC
CTAAGAAAGGCAAGGCTGCGTTGCCTCTCAAGAGAGACAGGACTAGGTCT
AAAAGATTCCTGGAAATTCAAAATTTGAGGGAAGGCAAGAAAGAGTATGA
TTTGAAGACGGCAATATCTTTGTTGAAGCAGATGTCAAGTACAAAGTTCA
CGGAAACAGCTGAAGCCCATTTTCGCCTCAACATTGATCCCAAATACAAT
GATCAACAGCTTAGAGCAACAGTGAGTTTACCCAAGGGAACTGGAAAATC
TGTTAAGGTGGCTGTTCCTGCTCAAGGTGAAAAGTTCGATGAAGCAAAAA
ATGCAAGAGCAGATTTGGTTGGTGGTGATGACTTGATTGAACAAATAAAA
AGGAGGATTCCTGGACTTCAACAAGCTAATTGCCTTCACACAATAAATGG
TTAACGTTGCCCACCCAAGGAAAAATTCCTTGAACCACGGGACTCCTGCC
AAATTCCAAAGCTGGGACTGGTACCACCAACCTACCCCAGGCCATAAAAA
AAATTCAAAAGGGAAAAGGTGAAATATAGACAAAATTAACATGGGCTTTG
CCCCCATACCCTTTTGGGAAAGCTTAAATTTCTGAAAAAAGCACCCCCCC
TTAACCCTCTCCTTCCTGCCCTTTTAACTCCAATGTAACACAAAACAAGC
CAAAAAGGGGGGCCAAAAGGAAACGTGTACGGGAAAAAAAGGCTCTTTCT
TTTTTTCCTCCCTCAAAAGGGGAAACCTCTCCCCTTTTCCTTCTTAAAAC
CACAAAAAAAAAAAAAGAGCCCCACAAATCAACAAACTCTCTCTCCTCCC
ACCAAAAAATTTTCCTTATTAAAAAAAAACAACACTTTAATACATTTAAA
ATA
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