FC871240

Overview
NameFC871240
Unique NameFC871240
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length664
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC871240 vs. ExPASy Swiss-Prot
Match: ZIP4_ARATH (Zinc transporter 4, chloroplastic OS=Arabidopsis thaliana GN=ZIP4 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.385e-17
Identity = 44/47 (93.62%), Postives = 45/47 (95.74%), Query Frame = 3 
Query:    3 LVYMALVDLIAADFLSKRMSCNFRLQVVSYLMLFLGAGLMSLLAIWA 143
            LVYMALVDLIAADFLSKRMSCN RLQVVSY+MLFLGAGLMS LAIWA
Sbjct:  328 LVYMALVDLIAADFLSKRMSCNLRLQVVSYVMLFLGAGLMSALAIWA 374
[Close]
BLAST of FC871240 vs. ExPASy Swiss-Prot
Match: IRT3_ARATH (Fe(2+) transport protein 3, chloroplastic OS=Arabidopsis thaliana GN=IRT3 PE=2 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 7.776e-16
Identity = 41/47 (87.23%), Postives = 44/47 (93.62%), Query Frame = 3 
Query:    3 LVYMALVDLIAADFLSKRMSCNFRLQVVSYLMLFLGAGLMSLLAIWA 143
            LVYMALVDLIAADFLS +M CNFRLQ+VSY+MLFLGAGLMS LAIWA
Sbjct:  343 LVYMALVDLIAADFLSTKMRCNFRLQIVSYVMLFLGAGLMSSLAIWA 389
[Close]
BLAST of FC871240 vs. ExPASy Swiss-Prot
Match: ZIP9_ARATH (Zinc transporter 9 OS=Arabidopsis thaliana GN=ZIP9 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.267e-14
Identity = 39/47 (82.98%), Postives = 43/47 (91.49%), Query Frame = 3 
Query:    3 LVYMALVDLIAADFLSKRMSCNFRLQVVSYLMLFLGAGLMSLLAIWA 143
            LVYMALVDLIAADFLSK+MS +FR+QVVSY  LFLGAG+MS LAIWA
Sbjct:  298 LVYMALVDLIAADFLSKKMSVDFRVQVVSYCFLFLGAGMMSALAIWA 344
The following BLAST results are available for this feature:
BLAST of FC871240 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
ZIP4_ARATH5.385e-1793.62Zinc transporter 4, chloroplastic OS=Arabidopsis t... [more]
IRT3_ARATH7.776e-1687.23Fe(2+) transport protein 3, chloroplastic OS=Arabi... [more]
ZIP9_ARATH3.267e-1482.98Zinc transporter 9 OS=Arabidopsis thaliana GN=ZIP9... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAK2AH05FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK2AH05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871240 ID=FC871240; Name=FC871240; organism=Citrus sinensis; type=EST; length=664bp
TTCTGGTGTACATGGCTTTAGTGGATCTAATTGCAGCAGATTTTCTCAGT
AAAAGGATGAGCTGCAATTTTAGGCTTCAAGTAGTGTCTTATTTGATGCT
GTTTCTTGGAGCTGGATTGATGTCTTTGCTTGCAATCTGGGCTTGACAAA
CTATTAGACTATGTCTTTTGGTTATTTATCTCCTCCCCCACCTTTAATTT
TTTCTATTGTTTTCAGAGCAACATGAAGAGAAATTTGTTCAATTCTTTCA
TAAAATTGCTTTAGTAGGGGAAGCATAGGTGCAAGGAGAGAAGCAAGAAA
TTGTATCCTTAGATTGTGATAATGTATCATTAGGTATGAAAATTTACTCT
CTTAATACAGATTGTAGCTGATGAGCAAATTAATAAAGTCAAAAAGTTCT
TTAGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAACCCCCCCTTTTTTTTTTGTTGGGGTGTG
TATAAAAAAAATTTTTTTTTTTTTTTTTTGTGGCACAAAGGCGCCCCCTC
TCAAAAAAAAAAATTTTTTTTTCTCCCCCCCCCCAAATCCCCCCTAAGGG
GGGATGGTTTAGGG
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