EY680082

Overview
NameEY680082
Unique NameEY680082
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length876
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY680082_ssr224 microsatellite EY680082_ssr224:224..238. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY680082 vs. ExPASy Swiss-Prot
Match: ELI_PEA (Early light-induced protein, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 6.441e-36
Identity = 86/142 (60.56%), Postives = 103/142 (72.54%), Query Frame = 1
Query:  133 RSGANQLSSVK--YLPSLRRNVNLSVRCTAXXXXXXXXXXXX-PTIPKAE---PQPP--KKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESKS 534
            RS  NQ +++   Y+P+LRRNV+L VR  A             PT P A    PQP   + P+MST FS++ AFSGPAPERINGRLAMIGFVAA+GVEI+KGQ +  QLS GGVAWFLGTSVLL++ASL+P F+GVSVESKS
Sbjct:   20 RSRVNQFTNIPSVYIPTLRRNVSLKVRSMAEGEPKEQSKVAVDPTTPTASTPTPQPAYTRPPKMSTKFSDLMAFSGPAPERINGRLAMIGFVAAMGVEIAKGQGLSEQLSGGGVAWFLGTSVLLSLASLIPFFQGVSVESKS 161          
BLAST of EY680082 vs. ExPASy Swiss-Prot
Match: DS22_CRAPL (Desiccation stress protein DSP-22, chloroplastic OS=Craterostigma plantagineum GN=DSP-22 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.832e-31
Identity = 66/166 (39.76%), Postives = 97/166 (58.43%), Query Frame = 1
Query:   64 MAASLATQSMLASPVAARVTGIRRSGANQLSSVKY---LPSLRRNVNLSVRCTAXXXXXXXXXXXXP--TIPKAEPQPPKKPRMSTGFS-EVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGF 543
            MA+S    ++ A     + T I R G N L   K    LP +RRN   +VR                  T        P +  ++T  + ++F+F G APERINGR AMIGFVAA+GVE++ G+DVF+Q+ +GGV WFL TS +L +A+L+P+++G+S E+K++GF
Sbjct:    1 MASSTCYATIPAMSCRGQST-ITRFGPNNLFLGKQSYELPLMRRNAKFTVRSMREDNEKEEQQQQKQQQTHDGGPDLTPNRTEVTTKRTVDLFSFDGLAPERINGRSAMIGFVAAVGVELATGRDVFSQVFNGGVMWFLLTSAVLVLATLIPIYRGLSPEAKNNGF 165          

HSP 2 Score: 51.6026 bits (122), Expect = 2.832e-31
Identity = 25/37 (67.57%), Postives = 29/37 (78.38%), Query Frame = 2
Query:  539 GFMTSDAELWNGRFAMLGPVALAFTEFC*GVAPLFNL 649
            GF  SDAE+WNGRFAM+G VALAFTE+  G  PL N+
Sbjct:  164 GFWNSDAEIWNGRFAMIGLVALAFTEYVKG-GPLINV 199          
BLAST of EY680082 vs. ExPASy Swiss-Prot
Match: ELI5_HORVU (High molecular mass early light-inducible protein HV58, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 7.758e-28
Identity = 52/98 (53.06%), Postives = 67/98 (68.37%), Query Frame = 1
Query:  253 PTIPKAEPQPPKKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLS--DGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDG 540
            PT   A P+P  K + +    +  AFSGPAPERINGRLAM+GFVAAL VE ++G  +  Q+     G+AWFL T+ + +VASL+PL +G SVESKS G
Sbjct:  100 PTTIPAAPKPVTK-KANPSVWDALAFSGPAPERINGRLAMVGFVAALSVEAARGGGLLDQVGMWSSGLAWFLATAGVFSVASLLPLLQGQSVESKSSG 196          

HSP 2 Score: 48.1358 bits (113), Expect = 7.758e-28
Identity = 25/37 (67.57%), Postives = 28/37 (75.68%), Query Frame = 2
Query:  539 GFMTSDAELWNGRFAMLGPVALAFTEFC*GVAPLFNL 649
            G  ++DAELWNGRFAMLG VALA TEF  G AP  N+
Sbjct:  196 GIWSADAELWNGRFAMLGLVALAATEFITG-APFVNI 231          
BLAST of EY680082 vs. ExPASy Swiss-Prot
Match: ELI9_HORVU (Low molecular mass early light-inducible protein HV90, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 6.447e-27
Identity = 65/154 (42.21%), Postives = 86/154 (55.84%), Query Frame = 1
Query:   76 LATQSMLASPVAARVTGIRRSGANQLSSVKYLPSLRRNVNLSVRCTAXXXXXXXXXXXXPTIPKAEPQPPKKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDG-GVAWFLGTSVLLTVASLVPLFKGVSVESKS 534
            +AT   ++S   A V  + RS A+   + + LP+L R   L VR               P+ P     PP KP+ ST   +  AFSGPAPERINGRLAM+GFV AL VE  +G  + +QL  G G AWF  T  +L++ASLVPL +G S E ++
Sbjct:    1 MATMMSMSSFAGAAV--VPRSSASSFGA-RSLPALGRRA-LVVRAQTEG----------PSAP-----PPNKPKASTSIWDEMAFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAVLSMASLVPLLQGESAEGRA 135          

HSP 2 Score: 43.5134 bits (101), Expect = 6.447e-27
Identity = 23/35 (65.71%), Postives = 26/35 (74.29%), Query Frame = 2
Query:  545 MTSDAELWNGRFAMLGPVALAFTEFC*GVAPLFNL 649
            M ++AELWNGRFAMLG VALA TE   G AP  N+
Sbjct:  139 MNANAELWNGRFAMLGLVALAATEIITG-APFINV 172          
BLAST of EY680082 vs. ExPASy Swiss-Prot
Match: ELI6_HORVU (Low molecular mass early light-inducible protein HV60, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 2.413e-26
Identity = 48/86 (55.81%), Postives = 60/86 (69.77%), Query Frame = 1
Query:  280 PPKKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDG-GVAWFLGTSVLLTVASLVPLFKGVSVESKS 534
            PP KP+ ST   +  AFSGPAPERINGRLAM+GFV AL VE  +G  + +QL  G G AWF  T  +L++ASLVPL +G S E ++
Sbjct:   45 PPNKPKASTSIWDAMAFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAMLSMASLVPLLQGESAEGRA 130          

HSP 2 Score: 41.2022 bits (95), Expect = 2.413e-26
Identity = 21/35 (60.00%), Postives = 25/35 (71.43%), Query Frame = 2
Query:  545 MTSDAELWNGRFAMLGPVALAFTEFC*GVAPLFNL 649
            M ++AELWNGRFAM+G VALA TE   G  P  N+
Sbjct:  134 MNANAELWNGRFAMIGLVALAATEIITG-TPFINV 167          
BLAST of EY680082 vs. ExPASy Swiss-Prot
Match: CBR_DUNBA (Carotene biosynthesis-related protein CBR, chloroplastic OS=Dunaliella bardawil GN=CBR PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.552e-16
Identity = 44/86 (51.16%), Postives = 51/86 (59.30%), Query Frame = 1
Query:  256 TIPKAEPQPPKKPRMSTG--FSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDGGVAWFLGTSVLLTVASLVPLF 507
            T P + P PP  P        +EV  FSG APE INGRLAM+GFVAALG E+S G+ V  QL D      L T VL + ASL+P F
Sbjct:   47 TPPPSSPSPPPPPPTPAAPTVTEVMGFSG-APEIINGRLAMLGFVAALGAELSTGESVLTQLGDQPTLIAL-TFVLFSAASLIPAF 130          

HSP 2 Score: 33.113 bits (74), Expect = 3.552e-16
Identity = 17/33 (51.52%), Postives = 21/33 (63.64%), Query Frame = 2
Query:  536 MGFMTSDAELWNGRFAMLGPVALAFTEFC*GVA 634
            MG  T DAE+ NGRFAM+G  A+   E   G+A
Sbjct:  138 MGPFTPDAEMTNGRFAMIGFAAMLVYEGIQGIA 170          
The following BLAST results are available for this feature:
BLAST of EY680082 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
ELI_PEA6.441e-3660.56Early light-induced protein, chloroplastic OS=Pisu... [more]
DS22_CRAPL2.832e-3139.76Desiccation stress protein DSP-22, chloroplastic O... [more]
ELI5_HORVU7.758e-2853.06High molecular mass early light-inducible protein ... [more]
ELI9_HORVU6.447e-2742.21Low molecular mass early light-inducible protein H... [more]
ELI6_HORVU2.413e-2655.81Low molecular mass early light-inducible protein H... [more]
CBR_DUNBA3.552e-1651.16Carotene biosynthesis-related protein CBR, chlorop... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-650-007-C02-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY680082 ID=EY680082; Name=EY680082; organism=Citrus sinensis; type=EST; length=876bp
CCGACCTGAAGCACCCAATTCCCGAATTATACTTTGTTCTGTTTTCTACT
TCATAAATTAAAAATGGCCGCATCACTTGCTACTCAATCTATGCTGGCAA
GTCCTGTAGCAGCTCGTGTGACTGGTATCAGGAGATCCGGGGCAAACCAA
CTTTCCTCCGTCAAGTACTTGCCTAGTCTGCGTAGAAATGTCAACTTATC
CGTGCGCTGCACGGCAGAGGATGAGCAGCAGCAGCAGCAGAAAGATGATC
AACCAACCATACCGAAAGCTGAGCCTCAGCCACCAAAGAAGCCGCGGATG
AGCACGGGGTTCTCTGAGGTGTTCGCGTTCAGCGGGCCGGCACCGGAGAG
GATAAACGGGAGGCTTGCGATGATTGGGTTCGTGGCTGCATTGGGGGTGG
AGATATCCAAGGGTCAGGATGTGTTTGCCCAGTTATCAGACGGTGGGGTT
GCCTGGTTCTTGGGGACCAGTGTTTTGCTCACGGTTGCGTCCCTGGTTCC
TTTGTTTAAAGGTGTCAGCGTGGAGTCTAAATCGGATGGGTTTCATGACT
TCCGATGCTGAGTTGTGGAATGGGAGGTTTGCTATGCTGGGCCCTGTTGC
TTTGGCTTTCACCGAATTTTGTTAAGGGGTGGCACCCTTGTTTAACCTTA
ATTTTGTTTAAATCTGTAAAATTGGTATTTTTTTAACAAATAAGGGTAGA
AATCCCACTGAAATTAAACCCCTTTTTCTCAGGCCAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAGGGGCGGCCGCCCTTAAAGAATCTCAACTTTAT
TAACCCTTTGTAGCCAAACCACATAACTCTATTTAACGTGTGCCCCCAAA
ATTCCATTTTCCGGGGGGCCGGCTTT
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