DT214526

Overview
NameDT214526
Unique NameDT214526
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length575
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-4cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DT214526 vs. ExPASy Swiss-Prot
Match: RS263_ARATH (40S ribosomal protein S26-3 OS=Arabidopsis thaliana GN=RPS26C PE=2 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 3.638e-50
Identity = 92/128 (71.88%), Postives = 99/128 (77.34%), Query Frame = -2
Query:  146 MTFKRRNGGLNKHGRGHVNFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQDACIYDNYVLPKLYAKMQYCVSCAIHSHXXXXXXXXXXXXREPPKRFMRRRDDLPKPGQPGQAPRPAIGVPVRP 529
            MTFKRRNGG NKH RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQ+A +Y+ Y LPKLYAK QYCVSCAIHSH            R PP RF RR++D PKP QPGQAPRPA G P  P
Sbjct:    1 MTFKRRNGGRNKHNRGHVKPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYEGYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFARRKEDTPKPAQPGQAPRPAGGAPAAP 128          
BLAST of DT214526 vs. ExPASy Swiss-Prot
Match: RS262_ARATH (40S ribosomal protein S26-2 OS=Arabidopsis thaliana GN=RPS26B PE=2 SV=2)

HSP 1 Score: 196.438 bits (498), Expect = 8.105e-50
Identity = 91/121 (75.21%), Postives = 98/121 (80.99%), Query Frame = -2
Query:  167 MTFKRRNGGLNKHGRGHVNFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQDACIYDNYVLPKLYAKMQYCVSCAIHSHXXXXXXXXXXXXREPPKRFMRRRDDLPKPGQPGQAPRPA 529
            MTFKRRNGG NKH RGHVN IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQ+A +Y+ Y LPKLYAK QYCVSCAIHSH            R PP RF RR++D PKPGQPGQAPRPA
Sbjct:    1 MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYEGYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFARRKEDTPKPGQPGQAPRPA 121          
BLAST of DT214526 vs. ExPASy Swiss-Prot
Match: RS261_ARATH (40S ribosomal protein S26-1 OS=Arabidopsis thaliana GN=RPS26A PE=2 SV=2)

HSP 1 Score: 196.438 bits (498), Expect = 8.105e-50
Identity = 91/121 (75.21%), Postives = 98/121 (80.99%), Query Frame = -2
Query:  167 MTFKRRNGGLNKHGRGHVNFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQDACIYDNYVLPKLYAKMQYCVSCAIHSHXXXXXXXXXXXXREPPKRFMRRRDDLPKPGQPGQAPRPA 529
            MTFKRRNGG NKH RGHVN IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQ+A +Y+ Y LPKLYAK QYCVSCAIHSH            R PP RF RR++D PKPGQPGQAPRPA
Sbjct:    1 MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYEGYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFTRRKEDTPKPGQPGQAPRPA 121          
BLAST of DT214526 vs. ExPASy Swiss-Prot
Match: RS26_ORYSJ (40S ribosomal protein S26 OS=Oryza sativa subsp. japonica GN=RPS26 PE=2 SV=2)

HSP 1 Score: 173.711 bits (439), Expect = 5.626e-43
Identity = 84/125 (67.20%), Postives = 94/125 (75.20%), Query Frame = -2
Query:  155 MTFKRRNGGLNKHGRGHVNFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQDACIYDNYVLPKLYAKMQYCVSCAIHSHXXXXXXXXXXXXREPPKRFMRRRDDLPKPGQPGQAPRPAIGVP 529
            MTFKRRNGG NKHGRGHV +IRCSNC KCCPKDKAIKRF VRNIVEQAA+RDVQ+AC++D YVLPKLYAK+ +CVSCAIH+H            R PP+RF RRR+D P      Q PRP  G P
Sbjct:    1 MTFKRRNGGRNKHGRGHVKYIRCSNCAKCCPKDKAIKRFQVRNIVEQAAIRDVQEACVHDGYVLPKLYAKVHHCVSCAIHAHIVRVRSRENRRDRRPPERF-RRREDRP------QGPRPGGGAP 118          
BLAST of DT214526 vs. ExPASy Swiss-Prot
Match: RS26_CAEEL (40S ribosomal protein S26 OS=Caenorhabditis elegans GN=rps-26 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 3.655e-34
Identity = 72/120 (60.00%), Postives = 82/120 (68.33%), Query Frame = -2
Query:  170 MTFKRRNGGLNKHGRGHVNFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQDACIYDNYVLPKLYAKMQYCVSCAIHSHXXXXXXXXXXXXREPPKRFMRRRDDLPKPGQPGQAPRP 529
            MTFKRRN G NK  RGHV FIRC+NCG+CCPKDKAIK+F+VRNIVE AAVRD+ DA  Y  Y LPKLY K+ YC++CAIHS             R PP RF  +R    +PG PG  PRP
Sbjct:    1 MTFKRRNHGRNKKNRGHVAFIRCTNCGRCCPKDKAIKKFVVRNIVEAAAVRDIGDASAYTQYALPKLYHKLHYCIACAIHSKVVRNRSREARRDRNPPPRF-GQRAAAARPGAPG--PRP 117          
BLAST of DT214526 vs. ExPASy Swiss-Prot
Match: RS26_OCTVU (40S ribosomal protein S26 OS=Octopus vulgaris GN=RPS26 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.536e-32
Identity = 67/117 (57.26%), Postives = 80/117 (68.38%), Query Frame = -2
Query:  179 MTFKRRNGGLNKHGRGHVNFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQDACIYDNYVLPKLYAKMQYCVSCAIHSHXXXXXXXXXXXXREPPKRFMRRRDDLPKPGQPGQA 529
            MT KRRN G  K GRGHV +IRC+NC +C PKDKAIK+F++RNIVE AAVRD+ DA +Y+ Y LPKLYAK+ YCVSCAIHS             R PP RF   R +  +  +PGQA
Sbjct:    1 MTSKRRNNGRGKKGRGHVKYIRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISDASVYEVYALPKLYAKLLYCVSCAIHSKIVRNRSREARKDRTPPIRFRPMRGEGGQNARPGQA 117          
BLAST of DT214526 vs. ExPASy Swiss-Prot
Match: RS26_DROME (40S ribosomal protein S26 OS=Drosophila melanogaster GN=RpS26 PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 3.782e-31
Identity = 63/100 (63.00%), Postives = 74/100 (74.00%), Query Frame = -2
Query:  230 MTFKRRNGGLNKHGRGHVNFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQDACIYDNYVLPKLYAKMQYCVSCAIHSHXXXXXXXXXXXXREPPKR 529
            MT KRRNGG NKH RGHV  +RC+NC +C PKDKAIK+F++RNIVE AAVRD+ +A I+D+YVLPKLYAK+ YCVSCAIHS             R PP R
Sbjct:    1 MTKKRRNGGRNKHNRGHVKPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASIWDSYVLPKLYAKLHYCVSCAIHSKVVRNRSREARRIRTPPLR 100          
BLAST of DT214526 vs. ExPASy Swiss-Prot
Match: RS26_SCHCO (40S ribosomal protein S26 OS=Schizophyllum commune GN=RPS26 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 4.940e-31
Identity = 62/100 (62.00%), Postives = 70/100 (70.00%), Query Frame = -2
Query:  230 MTFKRRNGGLNKHGRGHVNFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQDACIYDNYVLPKLYAKMQYCVSCAIHSHXXXXXXXXXXXXREPPKR 529
            MT KRRNGG NK GRGHV F+RCSNC +C  KDKAIKRF VRN+VE AA+RD+ DA +Y  Y +PKLY K+ YCVSCAIHSH            R PP R
Sbjct:    1 MTKKRRNGGRNKSGRGHVTFVRCSNCSRCVAKDKAIKRFTVRNMVESAAIRDISDASVYPEYAIPKLYIKIAYCVSCAIHSHVVRVRSREGRRNRAPPPR 100          
BLAST of DT214526 vs. ExPASy Swiss-Prot
Match: RS26_ANOGA (40S ribosomal protein S26 OS=Anopheles gambiae GN=RpS26 PE=3 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 4.940e-31
Identity = 62/100 (62.00%), Postives = 73/100 (73.00%), Query Frame = -2
Query:  230 MTFKRRNGGLNKHGRGHVNFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQDACIYDNYVLPKLYAKMQYCVSCAIHSHXXXXXXXXXXXXREPPKR 529
            MT KRRNGG  KH RGHV  +RC+NC +C PKDKAIK+F++RNIVE AAVRD+ DA +Y +YVLPKLYAK+ YCVSCAIHS             R PP+R
Sbjct:    1 MTKKRRNGGRCKHNRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISDASVYSSYVLPKLYAKLHYCVSCAIHSKVVRNRSKETRRIRTPPQR 100          
BLAST of DT214526 vs. ExPASy Swiss-Prot
Match: RS26_RAT (40S ribosomal protein S26 OS=Rattus norvegicus GN=Rps26 PE=3 SV=3)

HSP 1 Score: 130.568 bits (327), Expect = 5.462e-30
Identity = 67/120 (55.83%), Postives = 78/120 (65.00%), Query Frame = -2
Query:  170 MTFKRRNGGLNKHGRGHVNFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQDACIYDNYVLPKLYAKMQYCVSCAIHSHXXXXXXXXXXXXREPPKRFMRRRDDLPKPGQPGQAPRP 529
            MT KRRN G  K GRGHV  IRC+NC +C PKDKAIK+F++RNIVE AAVRD+ +A ++D YVLPKLY K+ YCVSCAIHS             R PP RF        +P   G APRP
Sbjct:    1 MTKKRRNNGRAKKGRGHVQPIRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEASVFDAYVLPKLYVKLHYCVSCAIHSKVVRNRSREARKDRTPPPRF--------RPA--GAAPRP 110          
The following BLAST results are available for this feature:
BLAST of DT214526 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
RS263_ARATH3.638e-5071.8840S ribosomal protein S26-3 OS=Arabidopsis thalian... [more]
RS262_ARATH8.105e-5075.2140S ribosomal protein S26-2 OS=Arabidopsis thalian... [more]
RS261_ARATH8.105e-5075.2140S ribosomal protein S26-1 OS=Arabidopsis thalian... [more]
RS26_ORYSJ5.626e-4367.2040S ribosomal protein S26 OS=Oryza sativa subsp. j... [more]
RS26_CAEEL3.655e-3460.0040S ribosomal protein S26 OS=Caenorhabditis elegan... [more]
RS26_OCTVU1.536e-3257.2640S ribosomal protein S26 OS=Octopus vulgaris GN=R... [more]
RS26_DROME3.782e-3163.0040S ribosomal protein S26 OS=Drosophila melanogast... [more]
RS26_SCHCO4.940e-3162.0040S ribosomal protein S26 OS=Schizophyllum commune... [more]
RS26_ANOGA4.940e-3162.0040S ribosomal protein S26 OS=Anopheles gambiae GN=... [more]
RS26_RAT5.462e-3055.8340S ribosomal protein S26 OS=Rattus norvegicus GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_57D08_b2 Parent Washington Navel Orange Callus cDNA Library UCRCS08-4 Citrus sinensis cDNA clone UCRCS08-57D08-G16-1-5.d-polyt, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DT214526 ID=DT214526|Name=DT214526|organism=Citrus sinensis|type=EST|length=575bp
GAATTAAAAATCCCAAAATTTTAACAATAATTCTTAAGACTTTGAAAAAG
AATAATGCGGCACATATTGAAACTTCCTACACAAAATTCAAGTGCTTGTA
GATATCTAAAAGCATAATAGCAGATTAAGAATGGAATAGACTTCATGGGC
GAACTGGAACTCCGATGGCTGGGCGTGGCGCTTGACCAGGCTGACCAGGC
TTTGGCAAATCATCCCTGCGTCTCATAAAACGCTTTGGTGGTTCACGGTT
CCTGCGGTCAGTGCGCGAGCGAACCCTCACCACATGCGAGTGAATTGCAC
AGGAGACACAGTACTGCATCTTTGCATACAACTTAGGCAGAACATAGTTA
TCATAGATGCAGGCATCCTGCACGTCTCTGACAGCAGCTTGCTCAACAAT
GTTCCTCACAAGGAACCTCTTGATGGCCTTGTCTTTGGGGCAGCATTTGC
CGCAGTTGGAGCAGCGGATGAAGTTGACGTGGCCACGGCCGTGCTTGTTG
AGGCCGCCGTTCCGGCGCTTGAAGGTCATTCTGTTTTCTTCAAGGGATGA
AGGCGGCGACAGGCGAGATTTGCCT
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