DR912182

Overview
NameDR912182
Unique NameDR912182
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length157
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR912182 vs. ExPASy Swiss-Prot
Match: GLNA1_ALNGL (Glutamine synthetase OS=Alnus glutinosa GN=GLN1 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.285e-26
Identity = 50/52 (96.15%), Postives = 52/52 (100.00%), Query Frame = 2
Query:    2 PQGPYYCGVGADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGP 157
            PQGPYYCG+GADKAWGRDIVD+HYKACLYAGINISGINGEVMPGQWEFQVGP
Sbjct:  153 PQGPYYCGIGADKAWGRDIVDAHYKACLYAGINISGINGEVMPGQWEFQVGP 204          
BLAST of DR912182 vs. ExPASy Swiss-Prot
Match: GLNA_PINSY (Glutamine synthetase cytosolic isozyme OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.191e-26
Identity = 50/52 (96.15%), Postives = 52/52 (100.00%), Query Frame = 2
Query:    2 PQGPYYCGVGADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGP 157
            PQGPYYCGVGADKAWGRDIVD+HYKACLY+GINISGINGEVMPGQWEFQVGP
Sbjct:  154 PQGPYYCGVGADKAWGRDIVDAHYKACLYSGINISGINGEVMPGQWEFQVGP 205          
BLAST of DR912182 vs. ExPASy Swiss-Prot
Match: GLNA1_VITVI (Glutamine synthetase cytosolic isozyme 1 OS=Vitis vinifera GN=GS1-1 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.862e-26
Identity = 49/52 (94.23%), Postives = 52/52 (100.00%), Query Frame = 2
Query:    2 PQGPYYCGVGADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGP 157
            PQGPYYCG+GADKAWGRDIVD+HYKACLYAGINISGINGEVMPGQWE+QVGP
Sbjct:  153 PQGPYYCGIGADKAWGRDIVDAHYKACLYAGINISGINGEVMPGQWEYQVGP 204          
BLAST of DR912182 vs. ExPASy Swiss-Prot
Match: GLNA2_VITVI (Glutamine synthetase cytosolic isozyme 2 OS=Vitis vinifera GN=GS1-2 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 8.327e-26
Identity = 50/52 (96.15%), Postives = 52/52 (100.00%), Query Frame = 2
Query:    2 PQGPYYCGVGADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGP 157
            PQGPYYCG+GADKA+GRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGP
Sbjct:  153 PQGPYYCGIGADKAFGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGP 204          
BLAST of DR912182 vs. ExPASy Swiss-Prot
Match: GLNA3_MEDSA (Glutamine synthetase nodule isozyme OS=Medicago sativa GN=GS1 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.420e-25
Identity = 49/52 (94.23%), Postives = 52/52 (100.00%), Query Frame = 2
Query:    2 PQGPYYCGVGADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGP 157
            PQGPYYCG+GADKA+GRDIVD+HYKACLYAGINISGINGEVMPGQWEFQVGP
Sbjct:  153 PQGPYYCGIGADKAYGRDIVDAHYKACLYAGINISGINGEVMPGQWEFQVGP 204          
BLAST of DR912182 vs. ExPASy Swiss-Prot
Match: GLNA1_MEDSA (Glutamine synthetase cytosolic isozyme OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.855e-25
Identity = 50/52 (96.15%), Postives = 51/52 (98.08%), Query Frame = 2
Query:    2 PQGPYYCGVGADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGP 157
            PQGPYYCG GADKA+GRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGP
Sbjct:  153 PQGPYYCGAGADKAFGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGP 204          
BLAST of DR912182 vs. ExPASy Swiss-Prot
Match: GLNA1_DAUCA (Glutamine synthetase cytosolic isozyme OS=Daucus carota GN=GLN1 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.855e-25
Identity = 49/52 (94.23%), Postives = 52/52 (100.00%), Query Frame = 2
Query:    2 PQGPYYCGVGADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGP 157
            PQGPYYCG+GADKA+GRDIVD+HYKACLYAGINISGINGEVMPGQWEFQVGP
Sbjct:  152 PQGPYYCGIGADKAFGRDIVDAHYKACLYAGINISGINGEVMPGQWEFQVGP 203          
BLAST of DR912182 vs. ExPASy Swiss-Prot
Match: GLN11_ORYSJ (Glutamine synthetase cytosolic isozyme 1-1 OS=Oryza sativa subsp. japonica GN=GLN1-1 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.855e-25
Identity = 49/52 (94.23%), Postives = 52/52 (100.00%), Query Frame = 2
Query:    2 PQGPYYCGVGADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGP 157
            PQGPYYCG+GADK++GRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGP
Sbjct:  153 PQGPYYCGIGADKSFGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGP 204          
BLAST of DR912182 vs. ExPASy Swiss-Prot
Match: GLNA_LACSA (Glutamine synthetase OS=Lactuca sativa PE=2 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 2.423e-25
Identity = 48/52 (92.31%), Postives = 52/52 (100.00%), Query Frame = 2
Query:    2 PQGPYYCGVGADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGP 157
            PQGPYYCG+GADKA+GRDIVD+HYKACLYAG+NISGINGEVMPGQWEFQVGP
Sbjct:  153 PQGPYYCGIGADKAFGRDIVDAHYKACLYAGVNISGINGEVMPGQWEFQVGP 204          
BLAST of DR912182 vs. ExPASy Swiss-Prot
Match: GLNA2_PHAVU (Glutamine synthetase PR-2 OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.423e-25
Identity = 49/52 (94.23%), Postives = 52/52 (100.00%), Query Frame = 2
Query:    2 PQGPYYCGVGADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGP 157
            PQGPYYCGVGADKA+GRDIVD+HYKAC+YAGINISGINGEVMPGQWEFQVGP
Sbjct:  153 PQGPYYCGVGADKAYGRDIVDAHYKACVYAGINISGINGEVMPGQWEFQVGP 204          
The following BLAST results are available for this feature:
BLAST of DR912182 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
GLNA1_ALNGL1.285e-2696.15Glutamine synthetase OS=Alnus glutinosa GN=GLN1 PE... [more]
GLNA_PINSY2.191e-2696.15Glutamine synthetase cytosolic isozyme OS=Pinus sy... [more]
GLNA1_VITVI2.862e-2694.23Glutamine synthetase cytosolic isozyme 1 OS=Vitis ... [more]
GLNA2_VITVI8.327e-2696.15Glutamine synthetase cytosolic isozyme 2 OS=Vitis ... [more]
GLNA3_MEDSA1.420e-2594.23Glutamine synthetase nodule isozyme OS=Medicago sa... [more]
GLNA1_MEDSA1.855e-2596.15Glutamine synthetase cytosolic isozyme OS=Medicago... [more]
GLNA1_DAUCA1.855e-2594.23Glutamine synthetase cytosolic isozyme OS=Daucus c... [more]
GLN11_ORYSJ1.855e-2594.23Glutamine synthetase cytosolic isozyme 1-1 OS=Oryz... [more]
GLNA_LACSA2.423e-2592.31Glutamine synthetase OS=Lactuca sativa PE=2 SV=2[more]
GLNA2_PHAVU2.423e-2594.23Glutamine synthetase PR-2 OS=Phaseolus vulgaris PE... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_20311 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-03_E07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR912182 ID=DR912182; Name=DR912182; organism=Citrus sinensis; type=EST; length=157bp
GCCTCAGGGACCATACTACTGTGGTGTTGGTGCTGACAAAGCTTGGGGGC
GTGACATTGTGGACTCCCATTACAAGGCCTGTCTATATGCAGGAATCAAC
ATCAGTGGCATCAATGGAGAAGTCATGCCGGGGCAGTGGGAGTTCCAAGT
TGGTCCC
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