FC871223

Overview
NameFC871223
Unique NameFC871223
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length698
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6589 contig Csv1_Contig6589:1..698. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC871223 vs. ExPASy Swiss-Prot
Match: AMT2_ARATH (Ammonium transporter 2 OS=Arabidopsis thaliana GN=AMT2 PE=1 SV=2)

HSP 1 Score: 229.18 bits (583), Expect = 1.664e-59
Identity = 108/151 (71.52%), Postives = 127/151 (84.11%), Query Frame = 1
Query:  241 YQHDLPEVPDWLNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKEWAVNSAFMVLYAFAAVLICWVLVCYRMAFGDQLLPFWGKGAPALGQKYLVGRARVPESTHEVDGKTVTTEPFYAMATLVYFQFTFAAITVILVAGSVLGRMNIRA 693
            Y   LPEVP+WLNKGD+AWQ+TA+TLVG+QSMPGL+I+YASIVKK+WAVNSAFM LYAFAAVL+CWVL+CY+MAFG++LLPFWGKG PA  Q YL G+A++P S            P++ MATLVYFQFTFAAIT ILVAGSVLGRMNI+A
Sbjct:    5 YDPSLPEVPEWLNKGDNAWQLTAATLVGLQSMPGLVILYASIVKKKWAVNSAFMALYAFAAVLLCWVLLCYKMAFGEELLPFWGKGGPAFDQGYLKGQAKIPNSN--------VAAPYFPMATLVYFQFTFAAITTILVAGSVLGRMNIKA 147          
BLAST of FC871223 vs. ExPASy Swiss-Prot
Match: AMT21_ORYSJ (Ammonium transporter 2 member 1 OS=Oryza sativa subsp. japonica GN=AMT2-1 PE=2 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 2.938e-56
Identity = 107/151 (70.86%), Postives = 123/151 (81.46%), Query Frame = 1
Query:  241 YQHDLPEVPDWLNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKEWAVNSAFMVLYAFAAVLICWVLVCYRMAFGDQLLPFWGKGAPALGQKYLVGRARVPESTHEVDGKTVTTEPFYAMATLVYFQFTFAAITVILVAGSVLGRMNIRA 693
            Y   LP VPDWLNKGD+AWQ+TASTLVGIQSMPGL+++Y SIVKK+WAVNSAFM LYA+A+ L+ WVLV +RMAFGDQLLPFWGK   AL Q YLVGRA +P + H   G    TEPFY  ATLV FQF FAAIT++L+AGSVLGRMNI+A
Sbjct:    7 YSASLPAVPDWLNKGDNAWQLTASTLVGIQSMPGLVVLYGSIVKKKWAVNSAFMALYAYASSLLVWVLVGFRMAFGDQLLPFWGKAGVALTQSYLVGRATLPATAH---GAIPRTEPFYPEATLVLFQFEFAAITLVLLAGSVLGRMNIKA 154          
BLAST of FC871223 vs. ExPASy Swiss-Prot
Match: AMT22_ORYSJ (Ammonium transporter 2 member 2 OS=Oryza sativa subsp. japonica GN=AMT2-2 PE=2 SV=2)

HSP 1 Score: 211.46 bits (537), Expect = 3.591e-54
Identity = 106/161 (65.84%), Postives = 126/161 (78.26%), Query Frame = 1
Query:  220 TPPIPKGYQHDLPEVPDWLNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKEWAVNSAFMVLYAFAAVLICWVLVCYRMAFGDQLLPFWGKGAPALGQKYLVGRARVPESTH-EVDG--KTVTTEPFYAMATLVYFQFTFAAITVILVAGSVLGRMNIRA 693
            +PP P  Y  DLP VP WLNKGD+AWQ+ A+T VGIQSMPGL++IY SIVKK+WAVNSAFM LYA+A+ LI WVLV +RMAFGD+LLPFW K  PAL Q +LV RA  P + H   DG  +T  TEPFYA A LV F+F FAAIT++L+AGS+LGRMNI+A
Sbjct:    7 SPPQPGPYMPDLPAVPAWLNKGDTAWQLVAATFVGIQSMPGLVVIYGSIVKKKWAVNSAFMALYAYASTLIVWVLVGFRMAFGDRLLPFWAKAGPALTQDFLVQRAVFPATAHYGSDGTLETPRTEPFYAEAALVLFEFEFAAITLVLLAGSLLGRMNIKA 167          
BLAST of FC871223 vs. ExPASy Swiss-Prot
Match: AMT33_ORYSJ (Ammonium transporter 3 member 3 OS=Oryza sativa subsp. japonica GN=AMT3-3 PE=2 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.179e-51
Identity = 96/158 (60.76%), Postives = 122/158 (77.22%), Query Frame = 1
Query:  229 IPKGYQHDLPEVPDWLNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKEWAVNSAFMVLYAFAAVLICWVLVCYRMAFGDQLLPFWGKGAPALGQKYLVGRARVPEST---HEVDGKTVTTEPFYAMATLVYFQFTFAAITVILVAGSVLGRMNIRA 693
            IP  YQ   P  PDWLNKGD+AWQMT++TLVG+QSMPGL+I+Y SIVKK+WA+NSAFM LYAFAAV ICWV+  Y M+FGD+LLPFWGK  PALGQ +LV ++ +  +    H    +    +P Y +AT+VYFQ  FA+IT+I++AGS+LGRMNI+A
Sbjct:    6 IPMAYQ-TTPSSPDWLNKGDNAWQMTSATLVGLQSMPGLVILYGSIVKKKWAINSAFMALYAFAAVWICWVVWAYNMSFGDRLLPFWGKARPALGQSFLVAQSELTATAIRYHNGSAEAPMLKPLYPVATMVYFQCMFASITIIILAGSLLGRMNIKA 162          
BLAST of FC871223 vs. ExPASy Swiss-Prot
Match: AMT31_ORYSJ (Ammonium transporter 3 member 1 OS=Oryza sativa subsp. japonica GN=AMT3-1 PE=2 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.663e-49
Identity = 96/159 (60.38%), Postives = 120/159 (75.47%), Query Frame = 1
Query:  241 YQHDLPEVPDWLNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKEWAVNSAFMVLYAFAAVLICWVLVCYRMAFGDQLLPFWGKGAPALGQKYLVGRARVPESTHEVDG--------KTVTTEPFYAMATLVYFQFTFAAITVILVAGSVLGRMNIRA 693
            YQ     VP+WLNKGD+AWQM ++TLVG+QS+PGL+I+Y SIVKK+WAVNSAFM LYAFAAV +CWV   Y M+FG +LLPFWGK  PALGQ +L+ +A +P++T    G        +T    P Y MAT+VYFQ  FAAIT+IL+AGS+LGRMNI+A
Sbjct:   12 YQPSGMAVPEWLNKGDNAWQMISATLVGMQSVPGLVILYGSIVKKKWAVNSAFMALYAFAAVWLCWVTWGYNMSFGHKLLPFWGKARPALGQSFLLAQAVLPQTTQFYKGGGGADAVVETPWVNPLYPMATMVYFQCVFAAITLILLAGSLLGRMNIKA 170          
BLAST of FC871223 vs. ExPASy Swiss-Prot
Match: AMT23_ORYSJ (Ammonium transporter 2 member 3 OS=Oryza sativa subsp. japonica GN=AMT2-3 PE=2 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 3.479e-49
Identity = 96/161 (59.63%), Postives = 122/161 (75.78%), Query Frame = 1
Query:  220 TPPIPKGYQHDLPEVPDWLNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKEWAVNSAFMVLYAFAAVLICWVLVCYRMAFGDQLLPFWGKGAPALGQKYLVGRARVPESTH-EVDG--KTVTTEPFYAMATLVYFQFTFAAITVILVAGSVLGRMNIRA 693
            +P  P  Y    P VP+WLN GD+ WQ+ A+T VG+QSMPGL+++Y SIVKK+WAVNSAFM LYA+A+ LI WVLV +RMAFGD+LLPFWGK   AL + +LV RA VP + H   DG  ++  TEPFY  A++V FQF  AAIT++L+AGS+LGRMNI+A
Sbjct:    3 SPTRPGPYMPRPPAVPEWLNTGDNGWQLAAATFVGLQSMPGLVVLYGSIVKKKWAVNSAFMALYAYASTLIVWVLVGFRMAFGDRLLPFWGKAGAALTEGFLVARASVPATAHYGKDGALESPRTEPFYPEASMVLFQFELAAITLVLLAGSLLGRMNIKA 163          
BLAST of FC871223 vs. ExPASy Swiss-Prot
Match: AMT32_ORYSJ (Ammonium transporter 3 member 2 OS=Oryza sativa subsp. japonica GN=AMT3-2 PE=2 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 4.543e-49
Identity = 96/159 (60.38%), Postives = 119/159 (74.84%), Query Frame = 1
Query:  229 IPKGYQHDLP-EVPDWLNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKEWAVNSAFMVLYAFAAVLICWVLVCYRMAFGDQLLPFWGKGAPALGQKYLVGRARVPESTH-EVDG--KTVTTEPFYAMATLVYFQFTFAAITVILVAGSVLGRMNIRA 693
            +P  YQ +    V DWLNKGD+AWQ+ A+T+VG+QS+PGL+++Y  +VKK+WAVNSAFM LYAFAAV ICWV   Y M+FG++LLP WGK  PAL Q  LVGRA +P + H   DG  +T   EP Y MAT+VYFQ  FAAIT+ILVAGS+LGRM+  A
Sbjct:    8 VPLAYQGNTSASVADWLNKGDNAWQLVAATVVGLQSVPGLVVLYGGVVKKKWAVNSAFMALYAFAAVWICWVTWAYNMSFGEKLLPIWGKARPALDQGLLVGRAALPATVHYRADGSVETAAVEPLYPMATVVYFQCVFAAITLILVAGSLLGRMSFLA 166          
BLAST of FC871223 vs. ExPASy Swiss-Prot
Match: Y663_METTH (Putative ammonium transporter MTH_663 OS=Methanobacterium thermoautotrophicum GN=MTH_663 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.129e-15
Identity = 49/140 (35.00%), Postives = 70/140 (50.00%), Query Frame = 1
Query:  274 LNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKEWAVNSAFMVLYAFAAVLICWVLVCYRMAFGDQLLPFWGKGAPALGQKYLVGRARVPESTHEVDGKTVTTEPFYAMATLVYFQFTFAAITVILVAGSVLGRMNIRA 693
            LN GD+AW + ++ LV + ++PG+ + Y  + KKE  +N+ F+ L AFA   I WVL  Y+ AFG  ++ F G     L     V  A                 P       + FQ TFAAITV L++G+V+ RM   A
Sbjct:   10 LNSGDTAWMLVSTALVMLMTVPGVALFYGGLTKKENVLNTMFLSLIAFAVTSIIWVLYGYQFAFGADIMGFIGSPVNLLMNGVGVNTA-------------AALAPTIPDFLYIAFQLTFAAITVALISGAVVERMKFSA 136          
BLAST of FC871223 vs. ExPASy Swiss-Prot
Match: AMT_AQUAE (Ammonia channel OS=Aquifex aeolicus GN=amt PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.745e-14
Identity = 45/140 (32.14%), Postives = 73/140 (52.14%), Query Frame = 1
Query:  274 LNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKEWAVNSAFMVLYAFAAVLICWVLVCYRMAFGDQLLPFWGKGAPALGQKYLVGRARVPESTHEVDGKTVTTEPFYAMATLVYFQFTFAAITVILVAGSVLGRMNIRA 693
            L+ G++AW + AS LV   ++PGL + Y  + K +  +N+  M   AFA V + W+ V Y +A+GD +  F G        +Y++G+         + G  + ++  Y     + FQ TFA IT  L++GS +GRM   A
Sbjct:   25 LDTGNTAWMLVASALVVFMTVPGLALFYGGLDKSKSILNTIAMSFSAFAVVTLTWIFVGYSVAYGDDIFGFIGNPF-----QYVLGKG--------ISG--INSDTGYPALLDLMFQLTFATITTALISGSFVGRMKFSA 149          
BLAST of FC871223 vs. ExPASy Swiss-Prot
Match: AMT_MYCTU (Probable ammonia channel OS=Mycobacterium tuberculosis GN=amt PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.760e-11
Identity = 46/151 (30.46%), Postives = 70/151 (46.36%), Query Frame = 1
Query:  244 QHDLPEVPDWLNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKEWAVNSAFMVLYAFAAVLICWVLVCYRMAFGDQLLPFWGKGAPALGQKYLVG-RARVPESTHEVDGKTVTTEPFYAMATLVYFQFTFAAITVILVAGSVLGRMNIRA 693
            Q  +  VPD    GD+AW + +S LV + + PGL   Y  +V+ +  +N   M + A   V + W L  Y +AFGD +    G  +   G K L+G  A   + + +     +           V FQ  FA ITV L++G+V  R+   A
Sbjct:    3 QFPIMGVPDG---GDTAWMLVSSALVLLMT-PGLAFFYGGMVRSKSVLNMIMMSISAMGVVTVLWALYGYSIAFGDDVGNIAGNPSQYWGLKGLIGVNAVAADPSTQTAAVNIPLAGTLPATVFVAFQLMFAIITVALISGAVADRLKFGA 149          
The following BLAST results are available for this feature:
BLAST of FC871223 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
AMT2_ARATH1.664e-5971.52Ammonium transporter 2 OS=Arabidopsis thaliana GN=... [more]
AMT21_ORYSJ2.938e-5670.86Ammonium transporter 2 member 1 OS=Oryza sativa su... [more]
AMT22_ORYSJ3.591e-5465.84Ammonium transporter 2 member 2 OS=Oryza sativa su... [more]
AMT33_ORYSJ2.179e-5160.76Ammonium transporter 3 member 3 OS=Oryza sativa su... [more]
AMT31_ORYSJ2.663e-4960.38Ammonium transporter 3 member 1 OS=Oryza sativa su... [more]
AMT23_ORYSJ3.479e-4959.63Ammonium transporter 2 member 3 OS=Oryza sativa su... [more]
AMT32_ORYSJ4.543e-4960.38Ammonium transporter 3 member 2 OS=Oryza sativa su... [more]
Y663_METTH1.129e-1535.00Putative ammonium transporter MTH_663 OS=Methanoba... [more]
AMT_AQUAE4.745e-1432.14Ammonia channel OS=Aquifex aeolicus GN=amt PE=1 SV... [more]
AMT_MYCTU3.760e-1130.46Probable ammonia channel OS=Mycobacterium tubercul... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK2AG08FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK2AG08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871223 ID=FC871223; Name=FC871223; organism=Citrus sinensis; type=EST; length=698bp
CTCATAAACGATTGATTGTTGCTTCTAACTCTACTCAGGTTTCGAATAGA
TGCGTCCGCGAAGATTGAAAGCGACTTTGCCTAAAAAGCATATGGTGATT
GGCGAAATGAAGCCCTCATATATGTAAATTGTATTATACTGATTACATGC
CTCTGAAATACCCTCGTGGTGATCTAAATATATTTGCTCCGACTTGAGCT
ACGACCTTGATACAGGGGTACTCCTCCAATACCCAAAGGTTATCAACACG
ATCTGCCAGAAGTCCCCGACTGGCTCAACAAAGGTGACAGTGCATGGCAG
ATGACGGCATCGACACTCGTCGGAATCCAAAGCATGCCGGGTCTCCTTAT
CATATACGCCAGCATCGTCAAGAAAGAGTGGGCAGTCAACTCAGCCTTCA
TGGTGCTCTATGCCTTTGCTGCCGTGCTCATTTGCTGGGTCCTTGTATGC
TATCGCATGGCTTTTGGTGACCAACTGCTCCCTTTCTGGGGCAAGGGCGC
CCCTGCTCTAGGCCAAAAGTACCTTGTTGGTCGAGCCAGAGTCCCAGAAA
GCACCCACGAAGTTGATGGCAAAACTGTGACCACTGAACCTTTCTATGCT
ATGGCTACACTTGTGTATTTTCAGTTCACTTTTGCTGCGATCACGGTTAT
TTTGGTAGCCGGCTCCGTTCTTGGTCGAATGAATATCAGGGCCCTGGA
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