DR912135

Overview
NameDR912135
Unique NameDR912135
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length172
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR912135 vs. ExPASy Swiss-Prot
Match: SODC_ANACO (Superoxide dismutase [Cu-Zn] OS=Ananas comosus GN=SOD1 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.656e-21
Identity = 46/54 (85.19%), Postives = 51/54 (94.44%), Query Frame = 2
Query:   11 MVKAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTN 172
            MVKAVAVLG +EGVKGT+ F+QEGDGPTTV+GS+SGLKPG HGFHVHALGDTTN
Sbjct:    1 MVKAVAVLGSSEGVKGTIYFTQEGDGPTTVTGSISGLKPGLHGFHVHALGDTTN 54          
BLAST of DR912135 vs. ExPASy Swiss-Prot
Match: SODC4_MAIZE (Superoxide dismutase [Cu-Zn] 4A OS=Zea mays GN=SODCC.3 PE=2 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 6.081e-21
Identity = 46/54 (85.19%), Postives = 51/54 (94.44%), Query Frame = 2
Query:   11 MVKAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTN 172
            MVKAVAVLG +EGVKGT+ F+QEGDGPTTV+GS+SGLKPG HGFHVHALGDTTN
Sbjct:    1 MVKAVAVLGSSEGVKGTIFFTQEGDGPTTVTGSVSGLKPGLHGFHVHALGDTTN 54          
BLAST of DR912135 vs. ExPASy Swiss-Prot
Match: SODC_ZANAE (Superoxide dismutase [Cu-Zn] OS=Zantedeschia aethiopica GN=SODCC PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.941e-20
Identity = 45/54 (83.33%), Postives = 51/54 (94.44%), Query Frame = 2
Query:   11 MVKAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTN 172
            MVKAVAVL G+EGV+GTV F+QEG+GPTT++GSLSGLKPG HGFHVHALGDTTN
Sbjct:    1 MVKAVAVLTGSEGVQGTVFFAQEGEGPTTITGSLSGLKPGLHGFHVHALGDTTN 54          
BLAST of DR912135 vs. ExPASy Swiss-Prot
Match: SODC2_ORYSJ (Superoxide dismutase [Cu-Zn] 2 OS=Oryza sativa subsp. japonica GN=SODCC2 PE=1 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 3.941e-20
Identity = 45/54 (83.33%), Postives = 50/54 (92.59%), Query Frame = 2
Query:   11 MVKAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTN 172
            MVKAVAVL  +EGVKGT+ FSQEGDGPT+V+GS+SGLKPG HGFHVHALGDTTN
Sbjct:    1 MVKAVAVLASSEGVKGTIFFSQEGDGPTSVTGSVSGLKPGLHGFHVHALGDTTN 54          
BLAST of DR912135 vs. ExPASy Swiss-Prot
Match: SODC_PAUKA (Superoxide dismutase [Cu-Zn] OS=Paulownia kawakamii GN=SODCC PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.148e-20
Identity = 43/54 (79.63%), Postives = 49/54 (90.74%), Query Frame = 2
Query:   11 MVKAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTN 172
            MVK VAVL  +EGV GT+ F+QEGDGPTTV+G++SGLKPGPHGFHVHALGDTTN
Sbjct:    1 MVKGVAVLSSSEGVSGTIYFTQEGDGPTTVTGNVSGLKPGPHGFHVHALGDTTN 54          
BLAST of DR912135 vs. ExPASy Swiss-Prot
Match: SODC5_MAIZE (Superoxide dismutase [Cu-Zn] 4AP OS=Zea mays GN=SODCC.2 PE=2 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 5.148e-20
Identity = 44/54 (81.48%), Postives = 50/54 (92.59%), Query Frame = 2
Query:   11 MVKAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTN 172
            MVKAVAVLG ++GVKGT+ F+QEGDGPT V+GS+SGLKPG HGFHVHALGDTTN
Sbjct:    1 MVKAVAVLGSSDGVKGTIFFTQEGDGPTAVTGSVSGLKPGLHGFHVHALGDTTN 54          
BLAST of DR912135 vs. ExPASy Swiss-Prot
Match: SODC_SOYBN (Superoxide dismutase [Cu-Zn] OS=Glycine max GN=SOD1 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.147e-19
Identity = 44/54 (81.48%), Postives = 50/54 (92.59%), Query Frame = 2
Query:   11 MVKAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTN 172
            MVKAVAVLG +EGV GT+ F+QEG+GPTTV+GSL+GLKPG HGFHVHALGDTTN
Sbjct:    1 MVKAVAVLGSSEGVTGTIFFTQEGNGPTTVTGSLAGLKPGLHGFHVHALGDTTN 54          
BLAST of DR912135 vs. ExPASy Swiss-Prot
Match: SODC_IPOBA (Superoxide dismutase [Cu-Zn] OS=Ipomoea batatas GN=SODCC PE=2 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 1.147e-19
Identity = 44/54 (81.48%), Postives = 49/54 (90.74%), Query Frame = 2
Query:   11 MVKAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTN 172
            MVKAVAVL  +EGV GT+ FSQEGDGPTTV+G++SGLKPG HGFHVHALGDTTN
Sbjct:    1 MVKAVAVLSSSEGVSGTIFFSQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTN 54          
BLAST of DR912135 vs. ExPASy Swiss-Prot
Match: SODC2_MAIZE (Superoxide dismutase [Cu-Zn] 2 OS=Zea mays GN=SODCC.1 PE=2 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 1.956e-19
Identity = 46/54 (85.19%), Postives = 50/54 (92.59%), Query Frame = 2
Query:   11 MVKAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTN 172
            MVKAVAVL GT+ VKGT+ FSQEGDGPTTV+GS+SGLKPG HGFHVHALGDTTN
Sbjct:    1 MVKAVAVLAGTD-VKGTIFFSQEGDGPTTVTGSISGLKPGLHGFHVHALGDTTN 53          
BLAST of DR912135 vs. ExPASy Swiss-Prot
Match: SODC1_ORYSJ (Superoxide dismutase [Cu-Zn] 1 OS=Oryza sativa subsp. japonica GN=SODCC1 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.691e-19
Identity = 43/54 (79.63%), Postives = 48/54 (88.89%), Query Frame = 2
Query:   11 MVKAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTN 172
            MVKAV VLG +E VKGT+ F QEGDGPTTV+GS+SGLKPG HGFH+HALGDTTN
Sbjct:    1 MVKAVVVLGSSEIVKGTIHFVQEGDGPTTVTGSVSGLKPGLHGFHIHALGDTTN 54          
The following BLAST results are available for this feature:
BLAST of DR912135 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
SODC_ANACO4.656e-2185.19Superoxide dismutase [Cu-Zn] OS=Ananas comosus GN=... [more]
SODC4_MAIZE6.081e-2185.19Superoxide dismutase [Cu-Zn] 4A OS=Zea mays GN=SOD... [more]
SODC_ZANAE3.941e-2083.33Superoxide dismutase [Cu-Zn] OS=Zantedeschia aethi... [more]
SODC2_ORYSJ3.941e-2083.33Superoxide dismutase [Cu-Zn] 2 OS=Oryza sativa sub... [more]
SODC_PAUKA5.148e-2079.63Superoxide dismutase [Cu-Zn] OS=Paulownia kawakami... [more]
SODC5_MAIZE5.148e-2081.48Superoxide dismutase [Cu-Zn] 4AP OS=Zea mays GN=SO... [more]
SODC_SOYBN1.147e-1981.48Superoxide dismutase [Cu-Zn] OS=Glycine max GN=SOD... [more]
SODC_IPOBA1.147e-1981.48Superoxide dismutase [Cu-Zn] OS=Ipomoea batatas GN... [more]
SODC2_MAIZE1.956e-1985.19Superoxide dismutase [Cu-Zn] 2 OS=Zea mays GN=SODC... [more]
SODC1_ORYSJ5.691e-1979.63Superoxide dismutase [Cu-Zn] 1 OS=Oryza sativa sub... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_20264 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-06_A02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR912135 ID=DR912135; Name=DR912135; organism=Citrus sinensis; type=EST; length=172bp
ACACAGCACAATGGTGAAAGCAGTTGCAGTTCTTGGTGGAACTGAGGGTG
TCAAGGGAACTGTTTCCTTTTCCCAGGAAGGAGATGGTCCAACAACTGTA
TCAGGAAGCCTCTCTGGTCTCAAGCCTGGTCCTCATGGATTCCATGTTCA
TGCTCTTGGAGACACAACAAAT
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