FC871221

Overview
NameFC871221
Unique NameFC871221
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length592
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13690 contig Csv1_Contig13690:18..610. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC871221 vs. ExPASy Swiss-Prot
Match: MDHG_CITLA (Malate dehydrogenase, glyoxysomal OS=Citrullus lanatus PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 5.805e-40
Identity = 73/84 (86.90%), Postives = 78/84 (92.86%), Query Frame = 2
Query:    2 VEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLERQRK 253
            VEAK GAGSATLSMAYAA KFADACLRGLRGDAGVIECA+V+S VTELPFFASKVRLGR GIEE+YSLGPLNEYER GLE+ +K
Sbjct:  258 VEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVIECAFVSSQVTELPFFASKVRLGRNGIEEVYSLGPLNEYERIGLEKAKK 341          

HSP 2 Score: 35.8094 bits (81), Expect = 5.805e-40
Identity = 16/18 (88.89%), Postives = 18/18 (100.00%), Query Frame = 1
Query:  241 KAKKELAGSIQKGVSFVR 294
            KAKKELAGSI+KGVSF+R
Sbjct:  338 KAKKELAGSIEKGVSFIR 355          
BLAST of FC871221 vs. ExPASy Swiss-Prot
Match: MDHG_CUCSA (Malate dehydrogenase, glyoxysomal OS=Cucumis sativus GN=MDHG PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 3.699e-39
Identity = 70/84 (83.33%), Postives = 78/84 (92.86%), Query Frame = 2
Query:    2 VEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLERQRK 253
            VEAK GAGSATLSMAYAA KFADACLRGLRGDAGV+ECA+V+S VTELPFFA+KVRLGR GI+E+YSLGPLNEYER GLE+ +K
Sbjct:  258 VEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVSSQVTELPFFATKVRLGRNGIDEVYSLGPLNEYERIGLEKAKK 341          

HSP 2 Score: 35.8094 bits (81), Expect = 3.699e-39
Identity = 16/18 (88.89%), Postives = 18/18 (100.00%), Query Frame = 1
Query:  241 KAKKELAGSIQKGVSFVR 294
            KAKKELAGSI+KGVSF+R
Sbjct:  338 KAKKELAGSIEKGVSFIR 355          
BLAST of FC871221 vs. ExPASy Swiss-Prot
Match: MDHG2_BRANA (Malate dehydrogenase 2, glyoxysomal OS=Brassica napus GN=MDH2 PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 7.335e-37
Identity = 67/84 (79.76%), Postives = 75/84 (89.29%), Query Frame = 2
Query:    2 VEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLERQRK 253
            VEAK GAGSATLSMAYAAAKFADACLRGLRGDA VIEC++VAS VTEL FFA+KVRLGR G EE++ LGPLNEYER GLE+ ++
Sbjct:  260 VEAKAGAGSATLSMAYAAAKFADACLRGLRGDANVIECSFVASQVTELAFFATKVRLGRTGAEEVFQLGPLNEYERVGLEKAKE 343          

HSP 2 Score: 35.8094 bits (81), Expect = 7.335e-37
Identity = 16/19 (84.21%), Postives = 18/19 (94.74%), Query Frame = 1
Query:  241 KAKKELAGSIQKGVSFVRK 297
            KAK+ELAGSIQKGV F+RK
Sbjct:  340 KAKEELAGSIQKGVDFIRK 358          
BLAST of FC871221 vs. ExPASy Swiss-Prot
Match: MDHG1_BRANA (Malate dehydrogenase 1, glyoxysomal OS=Brassica napus GN=MDH1 PE=2 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 7.335e-37
Identity = 67/84 (79.76%), Postives = 75/84 (89.29%), Query Frame = 2
Query:    2 VEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLERQRK 253
            VEAK GAGSATLSMAYAAAKFADACLRGLRGDA VIEC++VAS VTEL FFA+KVRLGR G EE++ LGPLNEYER GLE+ ++
Sbjct:  260 VEAKAGAGSATLSMAYAAAKFADACLRGLRGDANVIECSFVASQVTELAFFATKVRLGRTGAEEVFQLGPLNEYERVGLEKAKE 343          

HSP 2 Score: 35.8094 bits (81), Expect = 7.335e-37
Identity = 16/19 (84.21%), Postives = 18/19 (94.74%), Query Frame = 1
Query:  241 KAKKELAGSIQKGVSFVRK 297
            KAK+ELAGSIQKGV F+RK
Sbjct:  340 KAKEELAGSIQKGVDFIRK 358          
BLAST of FC871221 vs. ExPASy Swiss-Prot
Match: MDHG_SOYBN (Malate dehydrogenase, glyoxysomal OS=Glycine max PE=2 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 7.337e-37
Identity = 68/84 (80.95%), Postives = 73/84 (86.90%), Query Frame = 2
Query:    2 VEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLERQRK 253
            VEAK GAGSATLSMAYAA KFADACL  LRGDAG+IECAYVAS VTELPFFASKVRLGR G+EEI  LGPLN+YER  LE+ +K
Sbjct:  255 VEAKAGAGSATLSMAYAAVKFADACLHALRGDAGIIECAYVASQVTELPFFASKVRLGRVGVEEILPLGPLNDYERESLEKAKK 338          

HSP 2 Score: 35.039 bits (79), Expect = 7.337e-37
Identity = 15/19 (78.95%), Postives = 18/19 (94.74%), Query Frame = 1
Query:  241 KAKKELAGSIQKGVSFVRK 297
            KAKKELA SI+KG+SF+RK
Sbjct:  335 KAKKELAASIEKGISFIRK 353          
BLAST of FC871221 vs. ExPASy Swiss-Prot
Match: MDHG1_ARATH (Malate dehydrogenase, glyoxysomal OS=Arabidopsis thaliana GN=At5g09660 PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 9.558e-37
Identity = 67/83 (80.72%), Postives = 74/83 (89.16%), Query Frame = 2
Query:    2 VEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLERQR 250
            VEAK GAGSATLSMAYAAAKFADACLRGLRGDA V+EC++VAS VTEL FFA+KVRLGR G EE+Y LGPLNEYER GLE+ +
Sbjct:  256 VEAKAGAGSATLSMAYAAAKFADACLRGLRGDANVVECSFVASQVTELAFFATKVRLGRTGAEEVYQLGPLNEYERIGLEKAK 338          

HSP 2 Score: 35.039 bits (79), Expect = 9.558e-37
Identity = 16/19 (84.21%), Postives = 17/19 (89.47%), Query Frame = 1
Query:  241 KAKKELAGSIQKGVSFVRK 297
            KAK ELAGSIQKGV F+RK
Sbjct:  336 KAKDELAGSIQKGVEFIRK 354          
BLAST of FC871221 vs. ExPASy Swiss-Prot
Match: MDHG2_ARATH (Probable malate dehydrogenase, glyoxysomal OS=Arabidopsis thaliana GN=At2g22780 PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 1.245e-36
Identity = 69/84 (82.14%), Postives = 76/84 (90.48%), Query Frame = 2
Query:    2 VEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLERQRK 253
            VEAK GAGSATLSMAYAA +FADACLRGLRGDA ++ECAYVAS VTELPFFASKVRLGR GI+E+Y LGPLNEYER GLE+ +K
Sbjct:  256 VEAKAGAGSATLSMAYAAVEFADACLRGLRGDANIVECAYVASHVTELPFFASKVRLGRCGIDEVYGLGPLNEYERMGLEKAKK 339          

HSP 2 Score: 28.8758 bits (63), Expect = 1.245e-36
Identity = 13/19 (68.42%), Postives = 16/19 (84.21%), Query Frame = 1
Query:  241 KAKKELAGSIQKGVSFVRK 297
            KAKKEL+ SI KGV+F +K
Sbjct:  336 KAKKELSVSIHKGVTFAKK 354          
BLAST of FC871221 vs. ExPASy Swiss-Prot
Match: MDHG_ORYSJ (Malate dehydrogenase, glyoxysomal OS=Oryza sativa subsp. japonica GN=Os12g0632700 PE=1 SV=3)

HSP 1 Score: 147.902 bits (372), Expect = 3.554e-35
Identity = 72/92 (78.26%), Postives = 83/92 (90.22%), Query Frame = 2
Query:    2 VEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLERQRKS*REAFRR 277
            VEAK GAGSATLSMAYAA+KFADACLRGLRGDAG++EC++VAS VTELPFFASKVRLGR GIEEI SLGPLNE+ERAGLE+ +K   E+ ++
Sbjct:  258 VEAKAGAGSATLSMAYAASKFADACLRGLRGDAGIVECSFVASQVTELPFFASKVRLGRCGIEEILSLGPLNEFERAGLEKAKKELAESIQK 349          
BLAST of FC871221 vs. ExPASy Swiss-Prot
Match: MDHM1_ARATH (Malate dehydrogenase 1, mitochondrial OS=Arabidopsis thaliana GN=At1g53240 PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.768e-26
Identity = 57/80 (71.25%), Postives = 67/80 (83.75%), Query Frame = 2
Query:    2 VEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLE 241
            VEAK G GSATLSMAYA A FADACL+GL G   VIEC+YV ST+TELPFFASKVRLG+ G+EE+  LGPL+++E+ GLE
Sbjct:  243 VEAKAGKGSATLSMAYAGALFADACLKGLNGVPDVIECSYVQSTITELPFFASKVRLGKNGVEEVLDLGPLSDFEKEGLE 322          
BLAST of FC871221 vs. ExPASy Swiss-Prot
Match: MDHM_BRANA (Malate dehydrogenase, mitochondrial OS=Brassica napus GN=MDH PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 3.938e-26
Identity = 56/82 (68.29%), Postives = 67/82 (81.71%), Query Frame = 2
Query:    5 EAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLERQR 250
            EAK G GSATLSMAYA A FADACL+GL G   V+EC+YV ST+TELPFFASKVRLG+ G+EE+  LGPL+++E+ GLE  R
Sbjct:  244 EAKAGKGSATLSMAYAGALFADACLKGLNGVPDVVECSYVQSTITELPFFASKVRLGKNGVEEVLDLGPLSDFEKEGLEALR 325          
The following BLAST results are available for this feature:
BLAST of FC871221 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 141
Match NameE-valueIdentityDescription
MDHG_CITLA5.805e-4086.90Malate dehydrogenase, glyoxysomal OS=Citrullus lan... [more]
MDHG_CUCSA3.699e-3983.33Malate dehydrogenase, glyoxysomal OS=Cucumis sativ... [more]
MDHG2_BRANA7.335e-3779.76Malate dehydrogenase 2, glyoxysomal OS=Brassica na... [more]
MDHG1_BRANA7.335e-3779.76Malate dehydrogenase 1, glyoxysomal OS=Brassica na... [more]
MDHG_SOYBN7.337e-3780.95Malate dehydrogenase, glyoxysomal OS=Glycine max P... [more]
MDHG1_ARATH9.558e-3780.72Malate dehydrogenase, glyoxysomal OS=Arabidopsis t... [more]
MDHG2_ARATH1.245e-3682.14Probable malate dehydrogenase, glyoxysomal OS=Arab... [more]
MDHG_ORYSJ3.554e-3578.26Malate dehydrogenase, glyoxysomal OS=Oryza sativa ... [more]
MDHM1_ARATH1.768e-2671.25Malate dehydrogenase 1, mitochondrial OS=Arabidops... [more]
MDHM_BRANA3.938e-2668.29Malate dehydrogenase, mitochondrial OS=Brassica na... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK2AG05FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK2AG05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871221 ID=FC871221; Name=FC871221; organism=Citrus sinensis; type=EST; length=592bp
AGTTGAGGCAAAAACTGGAGCTGGTTCGGCCACTCTATCGATGGCATATG
CTGCTGCCAAGTTTGCCGATGCTTGTCTCCGAGGCTTGAGGGGGGATGCC
GGTGTTATTGAGTGTGCATACGTGGCTTCTACGGTGACTGAACTCCCTTT
CTTTGCATCCAAGGTACGGCTTGGCCGTGCTGGAATTGAGGAAATTTACT
CACTTGGCCCATTGAATGAGTATGAGAGGGCTGGTTTGGAAAGGCAAAGA
AAGAGTTAGCGGGAAGCATTCAGAAGGGAGTCAGTTTTGTCAGGAAATGA
GTAACCAATCACATGGTGACTAATGATAATGGTTGTGCTTTTGTTGTTTG
CCTCAAATATCTCAAGATTACTTTCCCCAGAATAAGAGGTAGGGTTTTCG
TTTTTCCATAATCAGATTGAATTAAGTTAGTTACAAAGAAGAAGCAAAAG
ATTCATCTTAGTGGGGTTGGTTTGGTTCTTTTGATATTCTTGTAATGAAG
GGATAAAGAATATGTAGATGACGAACTGCCGCCTGTTTTATCATTTTAAT
CAATTCAAAATCAGAGTTCATACTAAAAAAAAAAAAAAAAAA
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