DR912075

Overview
NameDR912075
Unique NameDR912075
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length186
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR912075 vs. ExPASy Swiss-Prot
Match: ARFF_ARATH (Auxin response factor 6 OS=Arabidopsis thaliana GN=ARF6 PE=2 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 1.527e-24
Identity = 53/59 (89.83%), Postives = 55/59 (93.22%), Query Frame = 3
Query:    3 DISKFSSYDELRGELARMFGLEGQLEDPQRSGWQLVFVDRENDVLLLGDDPWQEFVNNV 179
            DISKFSSY ELR ELARMFGLEGQLEDP RSGWQLVFVDRENDVLLLGDDPW EFV++V
Sbjct:  812 DISKFSSYHELRSELARMFGLEGQLEDPVRSGWQLVFVDRENDVLLLGDDPWPEFVSSV 870          
BLAST of DR912075 vs. ExPASy Swiss-Prot
Match: ARFY_ORYSJ (Auxin response factor 25 OS=Oryza sativa subsp. japonica GN=ARF25 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.205e-23
Identity = 49/59 (83.05%), Postives = 54/59 (91.53%), Query Frame = 3
Query:    3 DISKFSSYDELRGELARMFGLEGQLEDPQRSGWQLVFVDRENDVLLLGDDPWQEFVNNV 179
            DIS+FSSY ELR EL R+FGLEGQLEDP RSGWQLVFVDREND+LL+GDDPWQEF N+V
Sbjct:  782 DISRFSSYCELRSELERLFGLEGQLEDPVRSGWQLVFVDRENDILLVGDDPWQEFANSV 840          
BLAST of DR912075 vs. ExPASy Swiss-Prot
Match: ARFF_ORYSJ (Auxin response factor 6 OS=Oryza sativa subsp. japonica GN=ARF6 PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 4.912e-23
Identity = 48/59 (81.36%), Postives = 55/59 (93.22%), Query Frame = 3
Query:    3 DISKFSSYDELRGELARMFGLEGQLEDPQRSGWQLVFVDRENDVLLLGDDPWQEFVNNV 179
            DI++FSSY ELR E+ R+FGLEGQLEDP RSGWQLVFVDRE+DVLL+GDDPWQEFVN+V
Sbjct:  793 DITRFSSYHELRSEVGRLFGLEGQLEDPLRSGWQLVFVDREDDVLLVGDDPWQEFVNSV 851          
BLAST of DR912075 vs. ExPASy Swiss-Prot
Match: ARFF_ORYSI (Auxin response factor 6 OS=Oryza sativa subsp. indica GN=ARF6 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 4.912e-23
Identity = 48/59 (81.36%), Postives = 55/59 (93.22%), Query Frame = 3
Query:    3 DISKFSSYDELRGELARMFGLEGQLEDPQRSGWQLVFVDRENDVLLLGDDPWQEFVNNV 179
            DI++FSSY ELR E+ R+FGLEGQLEDP RSGWQLVFVDRE+DVLL+GDDPWQEFVN+V
Sbjct:  793 DITRFSSYHELRSEVGRLFGLEGQLEDPLRSGWQLVFVDREDDVLLVGDDPWQEFVNSV 851          
BLAST of DR912075 vs. ExPASy Swiss-Prot
Match: ARFQ_ORYSJ (Auxin response factor 17 OS=Oryza sativa subsp. japonica GN=ARF17 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.429e-22
Identity = 48/59 (81.36%), Postives = 55/59 (93.22%), Query Frame = 3
Query:    3 DISKFSSYDELRGELARMFGLEGQLEDPQRSGWQLVFVDRENDVLLLGDDPWQEFVNNV 179
            DI++FSSY ELR EL R+FGLEGQLE+P RSGWQLVFVDRE+DVLL+GDDPWQEFVN+V
Sbjct:  802 DITRFSSYHELRRELGRLFGLEGQLENPLRSGWQLVFVDREDDVLLVGDDPWQEFVNSV 860          
BLAST of DR912075 vs. ExPASy Swiss-Prot
Match: ARFQ_ORYSI (Auxin response factor 17 OS=Oryza sativa subsp. indica GN=ARF17 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.429e-22
Identity = 48/59 (81.36%), Postives = 55/59 (93.22%), Query Frame = 3
Query:    3 DISKFSSYDELRGELARMFGLEGQLEDPQRSGWQLVFVDRENDVLLLGDDPWQEFVNNV 179
            DI++FSSY ELR EL R+FGLEGQLE+P RSGWQLVFVDRE+DVLL+GDDPWQEFVN+V
Sbjct:  802 DITRFSSYHELRRELGRLFGLEGQLENPLRSGWQLVFVDREDDVLLVGDDPWQEFVNSV 860          
BLAST of DR912075 vs. ExPASy Swiss-Prot
Match: ARFH_ARATH (Auxin response factor 8 OS=Arabidopsis thaliana GN=ARF8 PE=2 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 1.867e-22
Identity = 47/61 (77.05%), Postives = 53/61 (86.89%), Query Frame = 3
Query:    3 DISKFSSYDELRGELARMFGLEGQLEDPQRSGWQLVFVDRENDVLLLGDDPWQEFVNNVGY 185
            DIS+FSSY ELR EL +MF +EG LEDP RSGWQLVFVD+END+LLLGDDPW+ FVNNV Y
Sbjct:  721 DISRFSSYHELREELGKMFAIEGLLEDPLRSGWQLVFVDKENDILLLGDDPWESFVNNVWY 781          
BLAST of DR912075 vs. ExPASy Swiss-Prot
Match: ARFL_ORYSJ (Auxin response factor 12 OS=Oryza sativa subsp. japonica GN=ARF12 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.438e-22
Identity = 46/61 (75.41%), Postives = 55/61 (90.16%), Query Frame = 3
Query:    3 DISKFSSYDELRGELARMFGLEGQLEDPQRSGWQLVFVDRENDVLLLGDDPWQEFVNNVGY 185
            DI++FS+Y ELR EL +MFG++GQL+DP RSGWQLVFVDRENDVLLLGDDPW+ FVN+V Y
Sbjct:  735 DITRFSNYAELREELGQMFGIKGQLDDPDRSGWQLVFVDRENDVLLLGDDPWESFVNSVWY 795          
BLAST of DR912075 vs. ExPASy Swiss-Prot
Match: ARFL_ORYSI (Auxin response factor 12 OS=Oryza sativa subsp. indica GN=ARF12 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.438e-22
Identity = 46/61 (75.41%), Postives = 55/61 (90.16%), Query Frame = 3
Query:    3 DISKFSSYDELRGELARMFGLEGQLEDPQRSGWQLVFVDRENDVLLLGDDPWQEFVNNVGY 185
            DI++FS+Y ELR EL +MFG++GQL+DP RSGWQLVFVDRENDVLLLGDDPW+ FVN+V Y
Sbjct:  733 DITRFSNYAELREELGQMFGIKGQLDDPDRSGWQLVFVDRENDVLLLGDDPWESFVNSVWY 793          
BLAST of DR912075 vs. ExPASy Swiss-Prot
Match: ARFG_ARATH (Auxin response factor 7 OS=Arabidopsis thaliana GN=ARF7 PE=1 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 2.980e-20
Identity = 41/59 (69.49%), Postives = 52/59 (88.14%), Query Frame = 3
Query:    3 DISKFSSYDELRGELARMFGLEGQLEDPQRSGWQLVFVDRENDVLLLGDDPWQEFVNNV 179
            D++++  YDELR +LARMFG+EGQLEDPQ S W+LV+VD END+LL+GDDPW+EFVN V
Sbjct: 1053 DVNRYRGYDELRHDLARMFGIEGQLEDPQTSDWKLVYVDHENDILLVGDDPWEEFVNCV 1111          
The following BLAST results are available for this feature:
BLAST of DR912075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
ARFF_ARATH1.527e-2489.83Auxin response factor 6 OS=Arabidopsis thaliana GN... [more]
ARFY_ORYSJ2.205e-2383.05Auxin response factor 25 OS=Oryza sativa subsp. ja... [more]
ARFF_ORYSJ4.912e-2381.36Auxin response factor 6 OS=Oryza sativa subsp. jap... [more]
ARFF_ORYSI4.912e-2381.36Auxin response factor 6 OS=Oryza sativa subsp. ind... [more]
ARFQ_ORYSJ1.429e-2281.36Auxin response factor 17 OS=Oryza sativa subsp. ja... [more]
ARFQ_ORYSI1.429e-2281.36Auxin response factor 17 OS=Oryza sativa subsp. in... [more]
ARFH_ARATH1.867e-2277.05Auxin response factor 8 OS=Arabidopsis thaliana GN... [more]
ARFL_ORYSJ2.438e-2275.41Auxin response factor 12 OS=Oryza sativa subsp. ja... [more]
ARFL_ORYSI2.438e-2275.41Auxin response factor 12 OS=Oryza sativa subsp. in... [more]
ARFG_ARATH2.980e-2069.49Auxin response factor 7 OS=Arabidopsis thaliana GN... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_20203 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-06_D08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR912075 ID=DR912075; Name=DR912075; organism=Citrus sinensis; type=EST; length=186bp
TGGATATTTCCAAATTCAGCAGCTATGATGAGCTGCGTGGTGAGCTCGCT
CGCATGTTTGGCCTTGAAGGCCAACTAGAGGACCCTCAGAGATCAGGCTG
GCAGCTTGTATTTGTTGACCGGGAGAATGATGTTCTTCTCCTTGGTGATG
ACCCTTGGCAGGAGTTTGTAAACAATGTGGGGTATA
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