DR912046

Overview
NameDR912046
Unique NameDR912046
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length194
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR912046 vs. ExPASy Swiss-Prot
Match: MT3_CARPA (Metallothionein-like protein type 3 OS=Carica papaya PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.627e-15
Identity = 34/53 (64.15%), Postives = 42/53 (79.25%), Query Frame = 2
Query:    2 SQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTCG 160
            +QCVKKGSSY AD +ET+ S ++  VVMD  AAE +G CKCGP+C+C NCTCG
Sbjct:   14 TQCVKKGSSYTADIIETEKSIMT--VVMDAPAAENDGKCKCGPSCSCTNCTCG 64          
BLAST of DR912046 vs. ExPASy Swiss-Prot
Match: MT3_MUSAC (Metallothionein-like protein type 3 OS=Musa acuminata PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.805e-12
Identity = 31/54 (57.41%), Postives = 39/54 (72.22%), Query Frame = 2
Query:    2 SQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTCGS 163
            SQCVKKG+SY  D VET+ S+V  V+V   +AAE +G CKCG  CAC +C CG+
Sbjct:   13 SQCVKKGNSYGIDIVETEKSYVDEVIVA-AEAAEHDGKCKCGAACACTDCKCGN 65          
BLAST of DR912046 vs. ExPASy Swiss-Prot
Match: MT3_ACTDE (Metallothionein-like protein type 3 OS=Actinidia deliciosa GN=pKIWI503 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.404e-11
Identity = 33/52 (63.46%), Postives = 38/52 (73.08%), Query Frame = 2
Query:    2 SQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTC 157
            SQCVKKG+S   D VETD S++  VV M V AAE+ G CKCG +C CVNCTC
Sbjct:   14 SQCVKKGNSI--DIVETDKSYIEDVV-MGVPAAESGGKCKCGTSCPCVNCTC 62          
The following BLAST results are available for this feature:
BLAST of DR912046 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
MT3_CARPA6.627e-1564.15Metallothionein-like protein type 3 OS=Carica papa... [more]
MT3_MUSAC1.805e-1257.41Metallothionein-like protein type 3 OS=Musa acumin... [more]
MT3_ACTDE3.404e-1163.46Metallothionein-like protein type 3 OS=Actinidia d... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_20174 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-53_D05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR912046 ID=DR912046; Name=DR912046; organism=Citrus sinensis; type=EST; length=194bp
GAGCCAGTGTGTGAAGAAGGGAAGCAGCTATGCTGCTGACTTCGTCGAGA
CTGACTTGAGCTTTGTCAGCACCGTTGTTGTCATGGACGTTCAGGCTGCT
GAGGCTGAAGGTAACTGCAAGTGCGGCCCCACCTGCGCTTGTGTGAACTG
CACTTGTGGTAGTCACTAATAAGCAAACACATGCAGCAAAAATA
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