FC871218

Overview
NameFC871218
Unique NameFC871218
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length589
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6885 contig Csv1_Contig6885:2..590. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC871218 vs. ExPASy Swiss-Prot
Match: PUB19_ARATH (U-box domain-containing protein 19 OS=Arabidopsis thaliana GN=PUB19 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.639e-16
Identity = 47/121 (38.84%), Postives = 75/121 (61.98%), Query Frame = 2
Query:   17 DSLAVLANLAEDIQGTSTILKTSALPVIIGLL-QTLTSRAGKEYCVSILLSLCSNAREEVTASLAKDPSLMNSLYSLTTDGTSQARKKARSLIKILHKFFETCSSGVEGSAVPHERPFHVW 376
            DS+A+LA +AE   G  ++L+   L + + +L  +  S A K++CV++LL+LC N   +V  SLAK+PS+M SLY+ +++G     KKA +LIK++H+F E   +G     +  ER  H W
Sbjct:  567 DSMAILAKMAEYPDGMISVLRRGGLKLAVKILGSSEVSPATKQHCVALLLNLCHNGGSDVVGSLAKNPSIMGSLYTASSNGELGGGKKASALIKMIHEFQER-KTGPGEPVLERERFVHAW 686          
BLAST of FC871218 vs. ExPASy Swiss-Prot
Match: PUB18_ARATH (U-box domain-containing protein 18 OS=Arabidopsis thaliana GN=PUB18 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.199e-12
Identity = 42/125 (33.60%), Postives = 69/125 (55.20%), Query Frame = 2
Query:    8 LITDSLAVLANLAEDIQGTSTILKTSALPVIIGLLQTLTSR--AGKEYCVSILLSLCSNAREEVTASLAKDPSLMNSLYSLTTDGTSQARKKARSLIKILHKFFETCSSGVEGSAVPHERPFHVW 376
            L  D LA LA LAE   GT  +++   L + + +L +      A K++CV ++L+LC N   +V   L K+  +M SLY++ ++G     KKA +LI+++H+F E  +  VE + +   R  H W
Sbjct:  574 LTADCLATLAKLAEYPDGTIGVIRRGGLKLAVKILSSSEDSPVAVKQHCVGLILNLCLNGGRDVVGVLVKNSLVMGSLYTVLSNGEYGGSKKASALIRMIHEFQERKTGSVEPN-LQRGRFVHAW 697          
The following BLAST results are available for this feature:
BLAST of FC871218 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PUB19_ARATH1.639e-1638.84U-box domain-containing protein 19 OS=Arabidopsis ... [more]
PUB18_ARATH3.199e-1233.60U-box domain-containing protein 18 OS=Arabidopsis ... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAK2AG02FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK2AG02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871218 ID=FC871218; Name=FC871218; organism=Citrus sinensis; type=EST; length=589bp
AACTGAACTAATAACAGATTCGCTAGCAGTTCTTGCAAATTTAGCTGAGG
ATATTCAAGGAACGTCGACAATTCTGAAGACTTCAGCATTGCCTGTAATT
ATTGGGCTATTGCAAACGTTAACTTCACGAGCTGGGAAAGAGTATTGTGT
CTCAATATTACTCTCTTTATGCAGCAATGCTCGTGAAGAGGTGACTGCAA
GTTTGGCGAAGGACCCTTCACTCATGAATTCACTATATTCTCTCACAACA
GATGGCACATCCCAAGCAAGAAAAAAGGCGCGTTCCCTCATCAAAATTCT
TCATAAATTCTTTGAAACTTGCTCCTCTGGAGTCGAGGGTTCGGCAGTTC
CTCATGAACGACCGTTTCATGTCTGGTAAATTGTTTTAGAATGATTCTAT
CACTATCAATGTAAATACAGACATACAATATAGCGTACAGAATCACATGG
TACTTTGATTGTTTTCAGCTTCTGCGATTTCAATTAGCTCAGTTTTTGTA
AGAGCTAATTACTTTTCAGTCTGCTTAGATTAGATACAAATACATAAATA
GATATGTGTAGTTGGCAAAAAAAAAAAAAAAAAAAAAAA
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