DR911960

Overview
NameDR911960
Unique NameDR911960
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length212
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR911960 vs. ExPASy Swiss-Prot
Match: CHIB_VITVI (Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.557e-11
Identity = 30/58 (51.72%), Postives = 42/58 (72.41%), Query Frame = 3
Query:   39 GELGKII*RNMIEDWLEYTNDKRCPARCSYTYDACIEAAKAYPAFGNSGNETMRKREI 212
            G++G++I R+M  D L++ N+  CP +  YTYDA I AAKA+P FG +G+ T RKREI
Sbjct:   63 GDIGQLITRSMFNDMLKHRNEGSCPGKGFYTYDAFIAAAKAFPGFGTTGDTTTRKREI 120          
BLAST of DR911960 vs. ExPASy Swiss-Prot
Match: CHIB_POPTR (Acidic endochitinase WIN6.2B OS=Populus trichocarpa PE=2 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 4.361e-11
Identity = 32/58 (55.17%), Postives = 41/58 (70.69%), Query Frame = 3
Query:   39 GELGKII*RNMIEDWLEYTNDKRCPARCSYTYDACIEAAKAYPAFGNSGNETMRKREI 212
            G L  II  +M +D L+Y ND +CPA   YTY+A I AAK +P FGN+G++ MRKREI
Sbjct:   83 GYLSDIIPESMFDDMLKYRNDPQCPAVGFYTYNAFISAAKEFPDFGNTGDDLMRKREI 140          
BLAST of DR911960 vs. ExPASy Swiss-Prot
Match: CHI2_BRANA (Endochitinase CH25 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.715e-11
Identity = 30/58 (51.72%), Postives = 40/58 (68.97%), Query Frame = 3
Query:   39 GELGKII*RNMIEDWLEYTNDKRCPARCSYTYDACIEAAKAYPAFGNSGNETMRKREI 212
            G+L  II R+  +D L++ ND  CPAR  YTYDA I AAK++P FG +G+   RK+EI
Sbjct:   69 GDLSGIISRSQFDDMLKHRNDNACPARGFYTYDAFINAAKSFPGFGTTGDTATRKKEI 126          
The following BLAST results are available for this feature:
BLAST of DR911960 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
CHIB_VITVI2.557e-1151.72Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE... [more]
CHIB_POPTR4.361e-1155.17Acidic endochitinase WIN6.2B OS=Populus trichocarp... [more]
CHI2_BRANA9.715e-1151.72Endochitinase CH25 OS=Brassica napus PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_20088 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-22_F02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR911960 ID=DR911960; Name=DR911960; organism=Citrus sinensis; type=EST; length=212bp
GAATGTGATCCCGACTACGGGACTGCTGGCATATGGCAGGCGAACTGGGC
AAGATCATCTGAAGGAACATGATTGAAGACTGGCTTGAGTATACAAATGA
TAAACGATGCCCTGCCAGATGCTCCTACACTTATGATGCTTGCATAGAAG
CAGCCAAAGCTTATCCAGCCTTTGGTAATTCTGGAAATGAAACCATGCGT
AAAAGAGAAATT
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