EY680233

Overview
NameEY680233
Unique NameEY680233
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length841
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY680233 vs. ExPASy Swiss-Prot
Match: TMED2_MOUSE (Transmembrane emp24 domain-containing protein 2 OS=Mus musculus GN=Tmed2 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.031e-11
Identity = 49/192 (25.52%), Postives = 93/192 (48.44%), Query Frame = 2
Query:  125 IAAILAFIFSPQAVYGIRFVIDREECFSHNVQYEGDTVHASFVVIKADSSWYSSHDGVDLVVKGPASDQIHDFRDKISEKFEFVAHHKGVHRFCFTNK--SPYHETIDFDVHVGHFSYYDEHAKDEHFNPLLEQISKLEEALYNIQFEQHWLEAQTERQAIVNEAMNRKAV*QAFWESTALVGASVPQVYPL 694
            + A+LA + +  + Y +      EECF   V   G  +   F V  A+  +      +D+ + GP +  I+    + S K+ F AH  G ++FCF+N+  +   + + F + +G      +   + H N L E I++L  A+  ++ EQ ++E +      +N+  N + V  +F+E+  LV  ++ Q+Y L
Sbjct:    7 LLALLAALLATASGYFVSIDAHAEECFFERVT-SGTKMGLIFEV--AEGGFLD----IDVEITGPDNKGIYKGDRESSGKYTFAAHMDGTYKFCFSNRMSTMTPKIVMFTIDIGEAPKGQDMETEAHQNKLEEMINELAVAMTAVKHEQEYMEVRERIHRAINDNTNSRVVLWSFFEALVLVAMTLGQIYYL 191          
BLAST of EY680233 vs. ExPASy Swiss-Prot
Match: TMED_NEMVE (Transmembrane emp24 domain-containing protein OS=Nematostella vectensis GN=v1g194562 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.759e-11
Identity = 50/189 (26.46%), Postives = 87/189 (46.03%), Query Frame = 2
Query:  134 ILAFIFSPQAVYGIRFVIDREECFSHNVQYEGDTVHASFVVIKADSSWYSSHDGVDLVVKGPASDQIHDFRDKISEKFEFVAHHKGVHRFCFTNK--SPYHETIDFDVHVGHFSYYDEHAKDEHFNPLLEQISKLEEALYNIQFEQHWLEAQTERQAIVNEAMNRKAV*QAFWESTALVGASVPQVYPL 694
            +L F+      Y I      EECF H+    G  +   F V  A+  +      +D+ + GP    I+    + S K+ F AH  G + +CF+NK  +   + + F + +G          +   + L E +S+L EA+  ++ EQ ++E +      +N+  N + V  +F+ES  LV  ++ QVY L
Sbjct:   12 VLMFLARSSLCYFITIDAHGEECF-HDKVTSGTKMGLIFEV--AEGGFLD----IDVKIIGPDQKVIYSGERETSGKYTFAAHMDGTYNYCFSNKMSTMTPKVLKFSMDIGEAPKDTSKEDNAGHDKLSEMVSQLSEAMTGVKHEQEYMEVRERIHRSINDNTNSRVVWWSFFESLVLVAMTLGQVYYL 193          
BLAST of EY680233 vs. ExPASy Swiss-Prot
Match: TMED2_CRIGR (Transmembrane emp24 domain-containing protein 2 (Fragment) OS=Cricetulus griseus GN=TMED2 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.297e-11
Identity = 48/192 (25.00%), Postives = 92/192 (47.92%), Query Frame = 2
Query:  125 IAAILAFIFSPQAVYGIRFVIDREECFSHNVQYEGDTVHASFVVIKADSSWYSSHDGVDLVVKGPASDQIHDFRDKISEKFEFVAHHKGVHRFCFTNK--SPYHETIDFDVHVGHFSYYDEHAKDEHFNPLLEQISKLEEALYNIQFEQHWLEAQTERQAIVNEAMNRKAV*QAFWESTALVGASVPQVYPL 694
            +  +LA + +  + Y +      EECF   V   G  +   F V  A+  +      +D+ + GP +  I+    + S K+ F AH  G ++FCF+N+  +   + + F + +G      +   + H N L E I++L  A+  ++ EQ ++E +      +N+  N + V  +F+E+  LV  ++ Q+Y L
Sbjct:    2 VLVLLAALLATASGYFVSIDAHAEECFFERVT-SGTKMGLIFEV--AEGGFLD----IDVEITGPDNKGIYKGDRESSGKYTFAAHMDGTYKFCFSNRMSTMTPKIVMFTIDIGEAPKGQDMETEAHQNKLEEMINELAVAMTAVKHEQEYMEVRERIHRAINDNTNSRVVLWSFFEALVLVAMTLGQIYYL 186          
BLAST of EY680233 vs. ExPASy Swiss-Prot
Match: TMED2_RAT (Transmembrane emp24 domain-containing protein 2 OS=Rattus norvegicus GN=Tmed2 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.000e-11
Identity = 48/192 (25.00%), Postives = 92/192 (47.92%), Query Frame = 2
Query:  125 IAAILAFIFSPQAVYGIRFVIDREECFSHNVQYEGDTVHASFVVIKADSSWYSSHDGVDLVVKGPASDQIHDFRDKISEKFEFVAHHKGVHRFCFTNK--SPYHETIDFDVHVGHFSYYDEHAKDEHFNPLLEQISKLEEALYNIQFEQHWLEAQTERQAIVNEAMNRKAV*QAFWESTALVGASVPQVYPL 694
            +  +LA + +  + Y +      EECF   V   G  +   F V  A+  +      +D+ + GP +  I+    + S K+ F AH  G ++FCF+N+  +   + + F + +G      +   + H N L E I++L  A+  ++ EQ ++E +      +N+  N + V  +F+E+  LV  ++ Q+Y L
Sbjct:    7 LLVLLAALLATASGYFVSIDAHAEECFFERVT-SGTKMGLIFEV--AEGGFLD----IDVEITGPDNKGIYKGDRESSGKYTFAAHMDGTYKFCFSNRMSTMTPKIVMFTIDIGEAPKGQDMETEAHQNKLEEMINELAVAMTAVKHEQEYMEVRERIHRAINDNTNSRVVLWSFFEALVLVAMTLGQIYYL 191          
BLAST of EY680233 vs. ExPASy Swiss-Prot
Match: TMED2_HUMAN (Transmembrane emp24 domain-containing protein 2 OS=Homo sapiens GN=TMED2 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.918e-11
Identity = 48/192 (25.00%), Postives = 92/192 (47.92%), Query Frame = 2
Query:  125 IAAILAFIFSPQAVYGIRFVIDREECFSHNVQYEGDTVHASFVVIKADSSWYSSHDGVDLVVKGPASDQIHDFRDKISEKFEFVAHHKGVHRFCFTNK--SPYHETIDFDVHVGHFSYYDEHAKDEHFNPLLEQISKLEEALYNIQFEQHWLEAQTERQAIVNEAMNRKAV*QAFWESTALVGASVPQVYPL 694
            +  +LA + +  + Y +      EECF   V   G  +   F V  A+  +      +D+ + GP +  I+    + S K+ F AH  G ++FCF+N+  +   + + F + +G      +   + H N L E I++L  A+  ++ EQ ++E +      +N+  N + V  +F+E+  LV  ++ Q+Y L
Sbjct:    7 LLVLLAALLATVSGYFVSIDAHAEECFFERVT-SGTKMGLIFEV--AEGGFLD----IDVEITGPDNKGIYKGDRESSGKYTFAAHMDGTYKFCFSNRMSTMTPKIVMFTIDIGEAPKGQDMETEAHQNKLEEMINELAVAMTAVKHEQEYMEVRERIHRAINDNTNSRVVLWSFFEALVLVAMTLGQIYYL 191          
The following BLAST results are available for this feature:
BLAST of EY680233 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
TMED2_MOUSE1.031e-1125.52Transmembrane emp24 domain-containing protein 2 OS... [more]
TMED_NEMVE1.759e-1126.46Transmembrane emp24 domain-containing protein OS=N... [more]
TMED2_CRIGR2.297e-1125.00Transmembrane emp24 domain-containing protein 2 (F... [more]
TMED2_RAT3.000e-1125.00Transmembrane emp24 domain-containing protein 2 OS... [more]
TMED2_HUMAN3.918e-1125.00Transmembrane emp24 domain-containing protein 2 OS... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-650-008-H01-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY680233 ID=EY680233; Name=EY680233; organism=Citrus sinensis; type=EST; length=841bp
CCACGCGTCCGGTTATCGCGACTGACAAAACTCAAACAACTCAAATAAAC
TCGATAAACCATAGAGGTTTTAAGATTTTTTTCAACTTCAATCGAAGATG
AAAGTTGGGCCAGTTGGGTTCTGTATTGCTGCAATTTTGGCATTTATTTT
TAGCCCTCAGGCTGTTTATGGTATTAGATTTGTGATTGATAGAGAAGAAT
GTTTTTCTCATAATGTACAATATGAAGGCGACACGGTTCATGCTTCATTT
GTTGTCATTAAGGCTGATTCATCTTGGTATAGTAGTCACGACGGTGTTGA
TCTTGTGGTGAAGGGACCTGCTAGTGATCAGATTCATGATTTTCGTGATA
AGATCAGTGAGAAATTTGAGTTTGTGGCCCATCATAAAGGAGTCCACCGC
TTCTGCTTCACAAACAAGTCTCCGTATCATGAAACCATAGACTTTGATGT
ACATGTTGGCCACTTTTCATACTATGATGAGCATGCCAAAGATGAGCATT
TTAATCCTTTGCTAGAACAGATATCCAAATTGGAGGAAGCCCTTTACAAC
ATTCAGTTCGAACAGCATTGGCTTGAGGCGCAGACTGAACGCCAGGCAAT
AGTAAATGAAGCAATGAATCGGAAGGCAGTTTAACAAGCATTCTGGGAAT
CCACTGCACTTGTCGGTGCAAGTGTTCCTCAAGTCTACCCCCTCCCCCCC
CCGTTCAAAAGGAAGCTTGGGAAGTCCCAAGTTTTACCTCTGGCCCTCAA
GCAATGAATTTGTAAAATAAAACACCCCAATGGCTGTTTCCTGGTTTTTT
GTTTTTTTTGGGATCTGGCCGGCCAAAAAAAAAAACTTTAC
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