DR911916

Overview
NameDR911916
Unique NameDR911916
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length221
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR911916 vs. ExPASy Swiss-Prot
Match: RS191_ARATH (40S ribosomal protein S19-1 OS=Arabidopsis thaliana GN=RPS19A PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.202e-18
Identity = 34/42 (80.95%), Postives = 39/42 (92.86%), Query Frame = 2
Query:    2 KRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRIT 127
            KRNGSRPPHFCKSSG IARHILQQL+ MNI++++ KGGRRIT
Sbjct:   84 KRNGSRPPHFCKSSGGIARHILQQLETMNIVELDTKGGRRIT 125          

HSP 2 Score: 32.7278 bits (73), Expect = 3.202e-18
Identity = 15/20 (75.00%), Postives = 16/20 (80.00%), Query Frame = 3
Query:  123 LLSIGQRDLDQVAGRIVVAP 182
            + S GQRDLDQVAGRI V P
Sbjct:  124 ITSSGQRDLDQVAGRIAVEP 143          
BLAST of DR911916 vs. ExPASy Swiss-Prot
Match: RS193_ARATH (40S ribosomal protein S19-3 OS=Arabidopsis thaliana GN=RPS19C PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 5.414e-18
Identity = 34/42 (80.95%), Postives = 39/42 (92.86%), Query Frame = 2
Query:    2 KRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRIT 127
            KRNGSRPPHFCKSSG +ARHILQQLQ MNI+D++ KGGR+IT
Sbjct:   84 KRNGSRPPHFCKSSGGVARHILQQLQTMNIVDLDTKGGRKIT 125          

HSP 2 Score: 30.8018 bits (68), Expect = 5.414e-18
Identity = 14/20 (70.00%), Postives = 16/20 (80.00%), Query Frame = 3
Query:  120 ELLSIGQRDLDQVAGRIVVA 179
            ++ S GQRDLDQVAGRI  A
Sbjct:  123 KITSSGQRDLDQVAGRIAAA 142          
BLAST of DR911916 vs. ExPASy Swiss-Prot
Match: RS192_ARATH (40S ribosomal protein S19-2 OS=Arabidopsis thaliana GN=RPS19B PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.643e-16
Identity = 33/42 (78.57%), Postives = 39/42 (92.86%), Query Frame = 2
Query:    2 KRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRIT 127
            KRNGSRPPHFCKSSG IARHILQQL+ M+I++++ KGGRRIT
Sbjct:   84 KRNGSRPPHFCKSSGGIARHILQQLETMSIVELDTKGGRRIT 125          

HSP 2 Score: 28.8758 bits (63), Expect = 1.643e-16
Identity = 13/16 (81.25%), Postives = 14/16 (87.50%), Query Frame = 3
Query:  123 LLSIGQRDLDQVAGRI 170
            + S GQRDLDQVAGRI
Sbjct:  124 ITSSGQRDLDQVAGRI 139          
BLAST of DR911916 vs. ExPASy Swiss-Prot
Match: RS19_ORYSJ (40S ribosomal protein S19 OS=Oryza sativa subsp. japonica GN=RPS19A PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.921e-16
Identity = 34/42 (80.95%), Postives = 39/42 (92.86%), Query Frame = 2
Query:    2 KRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRIT 127
            +RNGSRPPHFCKSSGAI+R+ILQQLQ M IID++PKGGR IT
Sbjct:   86 QRNGSRPPHFCKSSGAISRNILQQLQKMGIIDVDPKGGRLIT 127          

HSP 2 Score: 26.9498 bits (58), Expect = 7.921e-16
Identity = 12/18 (66.67%), Postives = 15/18 (83.33%), Query Frame = 3
Query:  123 LLSIGQRDLDQVAGRIVV 176
            + S G+RDLDQVAGR+ V
Sbjct:  126 ITSQGRRDLDQVAGRVDV 143          
The following BLAST results are available for this feature:
BLAST of DR911916 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
RS191_ARATH3.202e-1880.9540S ribosomal protein S19-1 OS=Arabidopsis thalian... [more]
RS193_ARATH5.414e-1880.9540S ribosomal protein S19-3 OS=Arabidopsis thalian... [more]
RS192_ARATH1.643e-1678.5740S ribosomal protein S19-2 OS=Arabidopsis thalian... [more]
RS19_ORYSJ7.921e-1680.9540S ribosomal protein S19 OS=Oryza sativa subsp. j... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_20044 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-06_E08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR911916 ID=DR911916; Name=DR911916; organism=Citrus sinensis; type=EST; length=221bp
TAAGAGGAATGGAAGTCGTCCACCTCACTTCTGCAAAAGCAGTGGTGCTA
TTGCTCGCCACATTCTTCAACAGTTGCAGAACATGAACATTATAGATATT
GAGCCCAAGGGTGGAAGGAGAATTACTTTCCATTGGCCAACGAGACCTTG
ACCAAGTTGCCGGAAGGATTGTCGTTGCTCCTTGAAGCTGCTTGACGGTG
ATCTTGTTTGATTTGTTGCAG
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