DR911910

Overview
NameDR911910
Unique NameDR911910
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length223
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR911910 vs. ExPASy Swiss-Prot
Match: G3P_PHYIN (Glyceraldehyde-3-phosphate dehydrogenase OS=Phytophthora infestans GN=GPDA PE=3 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 1.109e-13
Identity = 29/45 (64.44%), Postives = 38/45 (84.44%), Query Frame = 3
Query:   54 TIAKASTHMKGGAQKVVISASSADAPMFVVGVNEKTYKPNMNIVS 188
            T+ KASTH+K G +KVVISA S+DAPMFV+GVN + Y+ NM++VS
Sbjct:  101 TLEKASTHLKNGVEKVVISAPSSDAPMFVMGVNHELYEKNMHVVS 145          

HSP 2 Score: 31.187 bits (69), Expect = 1.109e-13
Identity = 13/21 (61.90%), Postives = 15/21 (71.43%), Query Frame = 1
Query:    4 WGDYGVDYVVESSGVFTQLRK 66
            WG+  V YVVES+G FT L K
Sbjct:   84 WGEEQVQYVVESTGAFTTLEK 104          
BLAST of DR911910 vs. ExPASy Swiss-Prot
Match: G3P_YARLI (Glyceraldehyde-3-phosphate dehydrogenase OS=Yarrowia lipolytica GN=GPD PE=3 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 1.870e-13
Identity = 28/41 (68.29%), Postives = 34/41 (82.93%), Query Frame = 3
Query:   66 ASTHMKGGAQKVVISASSADAPMFVVGVNEKTYKPNMNIVS 188
            AS H+KGGA+KV+ISA S DAPMFVVGVN   YKP+M ++S
Sbjct:  107 ASAHLKGGAKKVIISAPSGDAPMFVVGVNLDAYKPDMTVIS 147          

HSP 2 Score: 32.3426 bits (72), Expect = 1.870e-13
Identity = 13/17 (76.47%), Postives = 14/17 (82.35%), Query Frame = 1
Query:    4 WGDYGVDYVVESSGVFT 54
            WG  G DYVVES+GVFT
Sbjct:   86 WGKAGADYVVESTGVFT 102          
BLAST of DR911910 vs. ExPASy Swiss-Prot
Match: G3P_PLESA (Glyceraldehyde-3-phosphate dehydrogenase OS=Pleurotus sajor-caju GN=GPD PE=2 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 4.099e-13
Identity = 30/45 (66.67%), Postives = 35/45 (77.78%), Query Frame = 3
Query:   54 TIAKASTHMKGGAQKVVISASSADAPMFVVGVNEKTYKPNMNIVS 188
            TI KAS H+KGG +KVVISA SADAPMFV GVN +TY P   ++S
Sbjct:  102 TIDKASAHLKGG-EKVVISAPSADAPMFVCGVNLETYDPKYKVIS 145          

HSP 2 Score: 34.6538 bits (78), Expect = 4.099e-13
Identity = 14/21 (66.67%), Postives = 16/21 (76.19%), Query Frame = 1
Query:    4 WGDYGVDYVVESSGVFTQLRK 66
            WG  G DYVVES+GVFT + K
Sbjct:   85 WGSVGADYVVESTGVFTTIDK 105          
BLAST of DR911910 vs. ExPASy Swiss-Prot
Match: G3P_COCHE (Glyceraldehyde-3-phosphate dehydrogenase OS=Cochliobolus heterostrophus GN=GPD1 PE=3 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 1.514e-12
Identity = 29/45 (64.44%), Postives = 36/45 (80.00%), Query Frame = 3
Query:   54 TIAKASTHMKGGAQKVVISASSADAPMFVVGVNEKTYKPNMNIVS 188
            T  KA  H+KGGA+KVVISA S DAPMFV+GVN +TYKP++  +S
Sbjct:  103 TTEKAKAHLKGGAKKVVISAPSPDAPMFVMGVNHETYKPDIEALS 147          

HSP 2 Score: 28.8758 bits (63), Expect = 1.514e-12
Identity = 12/21 (57.14%), Postives = 14/21 (66.67%), Query Frame = 1
Query:    4 WGDYGVDYVVESSGVFTQLRK 66
            W + G  YVVES+GVFT   K
Sbjct:   86 WSETGAYYVVESTGVFTTTEK 106          
BLAST of DR911910 vs. ExPASy Swiss-Prot
Match: G3P_DEBHA (Glyceraldehyde-3-phosphate dehydrogenase OS=Debaryomyces hansenii GN=GPD PE=3 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 1.515e-12
Identity = 27/45 (60.00%), Postives = 35/45 (77.78%), Query Frame = 3
Query:   54 TIAKASTHMKGGAQKVVISASSADAPMFVVGVNEKTYKPNMNIVS 188
            T   A  H+ GGA+KV+I+A S+DAPMFVVGVNE+ Y P++ IVS
Sbjct:  103 TTEGAQKHIDGGAKKVIITAPSSDAPMFVVGVNEQKYTPDLKIVS 147          

HSP 2 Score: 33.4982 bits (75), Expect = 1.515e-12
Identity = 13/17 (76.47%), Postives = 15/17 (88.24%), Query Frame = 1
Query:    4 WGDYGVDYVVESSGVFT 54
            WG  GVDYV+ES+GVFT
Sbjct:   86 WGKAGVDYVIESTGVFT 102          
BLAST of DR911910 vs. ExPASy Swiss-Prot
Match: G3P_AJECA (Glyceraldehyde-3-phosphate dehydrogenase OS=Ajellomyces capsulata GN=GPD PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.290e-12
Identity = 32/45 (71.11%), Postives = 40/45 (88.89%), Query Frame = 3
Query:   54 TIAKASTHMKGGAQKVVISASSADAPMFVVGVNEKTYKPNMNIVS 188
            T  KAS H+KGGA+KV+ISA SADAPMFV+GVNEKTY P++N++S
Sbjct:  103 TTEKASAHLKGGAKKVIISAPSADAPMFVMGVNEKTYDPSVNVLS 147          
BLAST of DR911910 vs. ExPASy Swiss-Prot
Match: G3P2_DROSU (Glyceraldehyde-3-phosphate dehydrogenase 2 (Fragment) OS=Drosophila subobscura GN=Gapdh2 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.101e-12
Identity = 34/45 (75.56%), Postives = 38/45 (84.44%), Query Frame = 3
Query:   54 TIAKASTHMKGGAQKVVISASSADAPMFVVGVNEKTYKPNMNIVS 188
            TI KASTH+KGGA+KVVISA SADAPMFV GVN   YKP+M +VS
Sbjct:   91 TIEKASTHLKGGAKKVVISAPSADAPMFVCGVNLDAYKPDMKVVS 135          
BLAST of DR911910 vs. ExPASy Swiss-Prot
Match: G3P2_DROPS (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Drosophila pseudoobscura pseudoobscura GN=Gapdh2 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 5.101e-12
Identity = 34/45 (75.56%), Postives = 38/45 (84.44%), Query Frame = 3
Query:   54 TIAKASTHMKGGAQKVVISASSADAPMFVVGVNEKTYKPNMNIVS 188
            TI KASTH+KGGA+KVVISA SADAPMFV GVN   YKP+M +VS
Sbjct:  101 TIEKASTHLKGGAKKVVISAPSADAPMFVCGVNLDAYKPDMKVVS 145          
BLAST of DR911910 vs. ExPASy Swiss-Prot
Match: G3PT_MACFA (Glyceraldehyde-3-phosphate dehydrogenase, testis-specific OS=Macaca fascicularis GN=GAPDHS PE=2 SV=1)

HSP 1 Score: 55.8398 bits (133), Expect = 6.134e-12
Identity = 29/46 (63.04%), Postives = 34/46 (73.91%), Query Frame = 3
Query:   54 TIAKASTHMKGGAQKVVISASSADAPMFVVGVNEKTYKP-NMNIVS 188
            +I  AS H+  GAQ+VVISA S DAP FV+GVNE  Y P +MNIVS
Sbjct:  176 SIEAASNHISAGAQRVVISAPSPDAPTFVMGVNENNYNPGSMNIVS 221          

HSP 2 Score: 26.9498 bits (58), Expect = 6.134e-12
Identity = 10/11 (90.91%), Postives = 11/11 (100.00%), Query Frame = 1
Query:  190 DASCTTNCLAP 222
            +ASCTTNCLAP
Sbjct:  222 NASCTTNCLAP 232          

HSP 3 Score: 26.1794 bits (56), Expect = 6.134e-12
Identity = 10/19 (52.63%), Postives = 13/19 (68.42%), Query Frame = 1
Query:    4 WGDYGVDYVVESSGVFTQL 60
            W D G  YVVES+GV+  +
Sbjct:  159 WRDVGSPYVVESTGVYLSI 177          
BLAST of DR911910 vs. ExPASy Swiss-Prot
Match: G3P2_DROME (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Drosophila melanogaster GN=Gapdh2 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 8.702e-12
Identity = 33/45 (73.33%), Postives = 38/45 (84.44%), Query Frame = 3
Query:   54 TIAKASTHMKGGAQKVVISASSADAPMFVVGVNEKTYKPNMNIVS 188
            TI KASTH+KGGA+KV+ISA SADAPMFV GVN   YKP+M +VS
Sbjct:  101 TIDKASTHLKGGAKKVIISAPSADAPMFVCGVNLDAYKPDMKVVS 145          
The following BLAST results are available for this feature:
BLAST of DR911910 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
G3P_PHYIN1.109e-1364.44Glyceraldehyde-3-phosphate dehydrogenase OS=Phytop... [more]
G3P_YARLI1.870e-1368.29Glyceraldehyde-3-phosphate dehydrogenase OS=Yarrow... [more]
G3P_PLESA4.099e-1366.67Glyceraldehyde-3-phosphate dehydrogenase OS=Pleuro... [more]
G3P_COCHE1.514e-1264.44Glyceraldehyde-3-phosphate dehydrogenase OS=Cochli... [more]
G3P_DEBHA1.515e-1260.00Glyceraldehyde-3-phosphate dehydrogenase OS=Debary... [more]
G3P_AJECA2.290e-1271.11Glyceraldehyde-3-phosphate dehydrogenase OS=Ajello... [more]
G3P2_DROSU5.101e-1275.56Glyceraldehyde-3-phosphate dehydrogenase 2 (Fragme... [more]
G3P2_DROPS5.101e-1275.56Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Dros... [more]
G3PT_MACFA6.134e-1263.04Glyceraldehyde-3-phosphate dehydrogenase, testis-s... [more]
G3P2_DROME8.702e-1273.33Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Dros... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_20038 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-34_D05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR911910 ID=DR911910; Name=DR911910; organism=Citrus sinensis; type=EST; length=223bp
TTTTGGGGTGACTATGGGGTTGATTATGTTGTTGAATCTTCTGGAGTCTT
TACACAATTGCGAAAGCTTCCACTCACATGAAGGGTGGTGCCCAAAAGGT
GGTAATATCAGCTTCATCAGCTGATGCACCAATGTTTGTGGTAGGAGTGA
ATGAAAAGACATACAAGCCAAACATGAACATTGTTTCTTGATGCAAGTTG
TACTACCAATTGTCTTGCTCCTC
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