DR911844

Overview
NameDR911844
Unique NameDR911844
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length233
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR911844 vs. ExPASy Swiss-Prot
Match: RLA1_MAIZE (60S acidic ribosomal protein P1 OS=Zea mays GN=RPP1A PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.771e-19
Identity = 42/59 (71.19%), Postives = 53/59 (89.83%), Query Frame = 2
Query:   56 AGEQACTYATLILHDDGIAVTAEKIAALVKAANVQIESYWPSLFAKLAEKKNLDDLILN 232
            +GE AC YA LIL DDGIA+TAEKIA +VKAAN+++ESYWP+LFAKL EK+N++DLIL+
Sbjct:    3 SGELACRYAALILSDDGIAITAEKIATIVKAANIKVESYWPALFAKLLEKRNVEDLILS 61          
BLAST of DR911844 vs. ExPASy Swiss-Prot
Match: RLA11_ARATH (60S acidic ribosomal protein P1-1 OS=Arabidopsis thaliana GN=RPP1A PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 6.381e-18
Identity = 41/58 (70.69%), Postives = 50/58 (86.21%), Query Frame = 2
Query:   59 GEQACTYATLILHDDGIAVTAEKIAALVKAANVQIESYWPSLFAKLAEKKNLDDLILN 232
            GE AC+YA +IL D+GIA+TA+KIA LVKAA V IESYWP LFAK+AEK+N+ DLI+N
Sbjct:    5 GELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLIMN 62          
BLAST of DR911844 vs. ExPASy Swiss-Prot
Match: RLA13_ARATH (60S acidic ribosomal protein P1-3 OS=Arabidopsis thaliana GN=RPP1C PE=1 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 8.333e-18
Identity = 41/58 (70.69%), Postives = 50/58 (86.21%), Query Frame = 2
Query:   59 GEQACTYATLILHDDGIAVTAEKIAALVKAANVQIESYWPSLFAKLAEKKNLDDLILN 232
            GE AC+YA +IL D+GIA+TA+KIA LVKAA V IESYWP LFAK+AEK+N+ DLI+N
Sbjct:    5 GELACSYAVMILEDEGIAITADKIATLVKAAGVTIESYWPMLFAKMAEKRNVTDLIMN 62          
BLAST of DR911844 vs. ExPASy Swiss-Prot
Match: RLA12_ARATH (60S acidic ribosomal protein P1-2 OS=Arabidopsis thaliana GN=RPP1B PE=1 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 8.333e-18
Identity = 40/58 (68.97%), Postives = 51/58 (87.93%), Query Frame = 2
Query:   59 GEQACTYATLILHDDGIAVTAEKIAALVKAANVQIESYWPSLFAKLAEKKNLDDLILN 232
            GE AC+YA +IL D+GIA+T++KIA LVKAA V+IESYWP LFAK+AEK+N+ DLI+N
Sbjct:    5 GELACSYAVMILEDEGIAITSDKIATLVKAAGVEIESYWPMLFAKMAEKRNVTDLIMN 62          
BLAST of DR911844 vs. ExPASy Swiss-Prot
Match: RLA1_CHLRE (60S acidic ribosomal protein P1 OS=Chlamydomonas reinhardtii PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.738e-15
Identity = 36/57 (63.16%), Postives = 45/57 (78.95%), Query Frame = 2
Query:   62 EQACTYATLILHDDGIAVTAEKIAALVKAANVQIESYWPSLFAKLAEKKNLDDLILN 232
            E ACTYA LILHDDG+ +TA+ I  + KAA V++E YWP+LFAKL  KK++DDLI N
Sbjct:    5 ELACTYAALILHDDGLEITADNINTICKAAGVEVEGYWPALFAKLFAKKSMDDLITN 61          
BLAST of DR911844 vs. ExPASy Swiss-Prot
Match: RLA1_DROME (60S acidic ribosomal protein P1 OS=Drosophila melanogaster GN=RpLP1 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 4.732e-13
Identity = 35/57 (61.40%), Postives = 42/57 (73.68%), Query Frame = 2
Query:   62 EQACTYATLILHDDGIAVTAEKIAALVKAANVQIESYWPSLFAKLAEKKNLDDLILN 232
            E AC YA+LIL DD +AVT EKI  ++KAANV++E YWP LFAK  E  N+ DLI N
Sbjct:    6 ELACVYASLILVDDDVAVTGEKINTILKAANVEVEPYWPGLFAKALEGINVKDLITN 62          
BLAST of DR911844 vs. ExPASy Swiss-Prot
Match: RLA1_CAEEL (60S acidic ribosomal protein P1 OS=Caenorhabditis elegans GN=rla-1 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 5.232e-12
Identity = 33/55 (60.00%), Postives = 40/55 (72.73%), Query Frame = 2
Query:   62 EQACTYATLILHDDGIAVTAEKIAALVKAANVQIESYWPSLFAKLAEKKNLDDLI 226
            E AC YA LIL DD +A+T EKIA L+KAANV+ E YWP LFAK  E  ++ +LI
Sbjct:    6 ELACVYAALILQDDEVAITGEKIATLLKAANVEFEPYWPGLFAKALEGVDVKNLI 60          
BLAST of DR911844 vs. ExPASy Swiss-Prot
Match: RLA1_RAT (60S acidic ribosomal protein P1 OS=Rattus norvegicus GN=Rplp1 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.597e-11
Identity = 31/57 (54.39%), Postives = 38/57 (66.67%), Query Frame = 2
Query:   62 EQACTYATLILHDDGIAVTAEKIAALVKAANVQIESYWPSLFAKLAEKKNLDDLILN 232
            E AC Y+ LILHDD + VT +KI AL+KAA V +E +WP LFAK     N+  LI N
Sbjct:    6 ELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICN 62          
BLAST of DR911844 vs. ExPASy Swiss-Prot
Match: RLA1_MOUSE (60S acidic ribosomal protein P1 OS=Mus musculus GN=Rplp1 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.597e-11
Identity = 31/57 (54.39%), Postives = 38/57 (66.67%), Query Frame = 2
Query:   62 EQACTYATLILHDDGIAVTAEKIAALVKAANVQIESYWPSLFAKLAEKKNLDDLILN 232
            E AC Y+ LILHDD + VT +KI AL+KAA V +E +WP LFAK     N+  LI N
Sbjct:    6 ELACIYSALILHDDEVTVTEDKINALIKAAGVSVEPFWPGLFAKALANVNIGSLICN 62          
BLAST of DR911844 vs. ExPASy Swiss-Prot
Match: RLA1_HUMAN (60S acidic ribosomal protein P1 OS=Homo sapiens GN=RPLP1 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.597e-11
Identity = 31/57 (54.39%), Postives = 38/57 (66.67%), Query Frame = 2
Query:   62 EQACTYATLILHDDGIAVTAEKIAALVKAANVQIESYWPSLFAKLAEKKNLDDLILN 232
            E AC Y+ LILHDD + VT +KI AL+KAA V +E +WP LFAK     N+  LI N
Sbjct:    6 ELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICN 62          
The following BLAST results are available for this feature:
BLAST of DR911844 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
RLA1_MAIZE5.771e-1971.1960S acidic ribosomal protein P1 OS=Zea mays GN=RPP... [more]
RLA11_ARATH6.381e-1870.6960S acidic ribosomal protein P1-1 OS=Arabidopsis t... [more]
RLA13_ARATH8.333e-1870.6960S acidic ribosomal protein P1-3 OS=Arabidopsis t... [more]
RLA12_ARATH8.333e-1868.9760S acidic ribosomal protein P1-2 OS=Arabidopsis t... [more]
RLA1_CHLRE1.738e-1563.1660S acidic ribosomal protein P1 OS=Chlamydomonas r... [more]
RLA1_DROME4.732e-1361.4060S acidic ribosomal protein P1 OS=Drosophila mela... [more]
RLA1_CAEEL5.232e-1260.0060S acidic ribosomal protein P1 OS=Caenorhabditis ... [more]
RLA1_RAT2.597e-1154.3960S acidic ribosomal protein P1 OS=Rattus norvegic... [more]
RLA1_MOUSE2.597e-1154.3960S acidic ribosomal protein P1 OS=Mus musculus GN... [more]
RLA1_HUMAN2.597e-1154.3960S acidic ribosomal protein P1 OS=Homo sapiens GN... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_19972 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-04_G06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR911844 ID=DR911844; Name=DR911844; organism=Citrus sinensis; type=EST; length=233bp
AAGCCAAACGCAGCCTCTCAGTGTGCGGATTTTAGAATTATCAATTGCAA
TAATGGCCGGAGAGCAAGCTTGCACCTACGCCACTTTGATTCTCCACGAC
GATGGAATCGCAGTCACTGCGGAGAAGATCGCGGCTTTGGTTAAGGCAGC
GAATGTGCAAATAGAGTCTTACTGGCCAAGCCTTTTTGCGAAGTTGGCTG
AAAAGAAAAACTTGGATGATCTCATCTTGAATG
back to top