DR911839

Overview
NameDR911839
Unique NameDR911839
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length235
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DR911839 vs. ExPASy Swiss-Prot
Match: SPT51_ARATH (Putative transcription elongation factor SPT5 homolog 1 OS=Arabidopsis thaliana GN=At4g08350 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.611e-13
Identity = 33/46 (71.74%), Postives = 42/46 (91.30%), Query Frame = 1 
Query:    1 KIMGGPHRGATGKLIGVDGTDGIVKVDVSLDVKILDMAILAKLAQP 138
            KI+GG +RG+TGKLIG+DG+DGIVK+D +LDVKILD+A+LAK  QP
Sbjct: 1009 KIVGGQYRGSTGKLIGIDGSDGIVKIDDNLDVKILDLALLAKFVQP 1054
The following BLAST results are available for this feature:
BLAST of DR911839 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
SPT51_ARATH3.611e-1371.74Putative transcription elongation factor SPT5 homo... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_19967 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-53_H06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR911839 ID=DR911839; Name=DR911839; organism=Citrus sinensis; type=EST; length=235bp
AAGATAATGGGTGGTCCACATCGCGGTGCAACAGGCAAATTAATTGGTGT
GGATGGTACTGATGGAATTGTAAAAGTAGATGTCAGTCTTGATGTTAAGA
TATTAGACATGGCTATACTTGCAAAATTAGCACAACCATGAGCAACATGG
TTGTAGACGAAAATTCATAGTGTATATTTGTTGTTCCTAAATTTTGAGTA
AAATTTATTAGAGGATTTTCTTTCAAAAAAAAAAA
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