DR911800

Overview
NameDR911800
Unique NameDR911800
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length240
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DR911800 vs. ExPASy Swiss-Prot
Match: PP208_ARATH (Pentatricopeptide repeat-containing protein At3g02490, mitochondrial OS=Arabidopsis thaliana GN=At3g02490 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.279e-18
Identity = 41/65 (63.08%), Postives = 55/65 (84.62%), Query Frame = 2 
Query:   41 GFKDALSLLCLMKDHGFPPFVDPFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFEAFFQA 235
            GF++ALSLL +M++HGFPPFVDPF+ Y+S SGTS +A AFLK +TSK+FPS S+VL +FEA  ++
Sbjct:  552 GFEEALSLLPMMRNHGFPPFVDPFMDYLSNSGTSAEAFAFLKAVTSKKFPSNSMVLRVFEAMLKS 616
[Close]
BLAST of DR911800 vs. ExPASy Swiss-Prot
Match: PP387_ARATH (Pentatricopeptide repeat-containing protein At5g15980, mitochondrial OS=Arabidopsis thaliana GN=At5g15980 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.561e-16
Identity = 38/65 (58.46%), Postives = 50/65 (76.92%), Query Frame = 2 
Query:   41 GFKDALSLLCLMKDHGFPPFVDPFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFEAFFQA 235
            GF++ALSLL +MKDHGFPPF+DPF+ Y S +G S +A+ FLK MTS  FP +SVVL +FE   ++
Sbjct:  559 GFEEALSLLPIMKDHGFPPFIDPFMSYFSSTGKSTEALGFLKAMTSNNFPYISVVLRVFETMMKS 623
The following BLAST results are available for this feature:
BLAST of DR911800 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PP208_ARATH8.279e-1863.08Pentatricopeptide repeat-containing protein At3g02... [more]
PP387_ARATH1.561e-1658.46Pentatricopeptide repeat-containing protein At5g15... [more]
back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_19928 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-05_H04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR911800 ID=DR911800; Name=DR911800; organism=Citrus sinensis; type=EST; length=240bp
ACATATAAAGAATTGATAAAGAATTTATTAGTTCAGCTGTGGGTTTAAAG
ATGCATTAAGTCTTCTGTGTTTGATGAAGGATCATGGCTTCCCACCTTTT
GTGGATCCATTCATCAAGTATGTATCAAAGTCTGGAACCAGTGATGATGC
TATCGCTTTCCTCAAGGGTATGACTTCAAAGAGGTTTCCATCCATGTCTG
TGGTTCTTTGTTTATTTGAAGCCTTTTTCCAGGCAAGAAG
back to top