FC871206

Overview
NameFC871206
Unique NameFC871206
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length378
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2008 contig Csv1_Contig2008:386..763. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC871206 vs. ExPASy Swiss-Prot
Match: USPAL_ARATH (Universal stress protein A-like protein OS=Arabidopsis thaliana GN=At3g01520 PE=1 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 4.458e-11
Identity = 27/63 (42.86%), Postives = 46/63 (73.02%), Query Frame = 2 
Query:    8 VNVETRVESGDPRDVICEMVQKLGVDVLVMGSHGYGWFKRAFLGSVSNHCAQNVKCPVLIVKK 196
            V  E  +++GDP+DVIC+ V+++  D LV+GS G G F++ F+G+VS  C ++ +CPV+ +K+
Sbjct:  101 VGCEAWIKTGDPKDVICQEVKRVRPDFLVVGSRGLGRFQKVFVGTVSAFCVKHAECPVMTIKR 163
The following BLAST results are available for this feature:
BLAST of FC871206 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
USPAL_ARATH4.458e-1142.86Universal stress protein A-like protein OS=Arabido... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAK2AF10FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK2AF10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871206 ID=FC871206; Name=FC871206; organism=Citrus sinensis; type=EST; length=378bp
TAACGATGTTAATGTGGAGACGAGAGTTGAGTCCGGTGATCCAAGGGACG
TGATTTGCGAGATGGTACAGAAGCTGGGTGTGGACGTGTTAGTCATGGGT
AGCCATGGCTACGGTTGGTTCAAAAGGGCCTTCTTGGGGAGTGTGAGCAA
TCATTGTGCACAAAATGTGAAGTGTCCCGTCTTGATCGTTAAGAAGCCCA
AATCCAACAATCTTGGAAAGTAAATAATCTGCTTTTGTTCTTGAAAATTT
ATGTTGTGTATTGTATGATATAACTTCAAGATTTTTCCCTTTTTGTTGCA
GTGTAAATGTGTGTACGTACAAATAAAATCTATCGACTATGAGAAGTTTG
TTTGTGAAAAAAAAAAAAAAAAAAAAAA
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