DR911781

Overview
NameDR911781
Unique NameDR911781
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length243
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR911781 vs. ExPASy Swiss-Prot
Match: TPIS_PETHY (Triosephosphate isomerase, cytosolic OS=Petunia hybrida GN=TPIP1 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.401e-17
Identity = 41/46 (89.13%), Postives = 43/46 (93.48%), Query Frame = 2
Query:    2 IYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSATVKKN 139
            IYGGSVNGANCKEL  QPDVDGFLVGGASLKPEFIDIIK+A VK+N
Sbjct:  208 IYGGSVNGANCKELGGQPDVDGFLVGGASLKPEFIDIIKAAEVKRN 253          
BLAST of DR911781 vs. ExPASy Swiss-Prot
Match: TPIS_ORYSJ (Triosephosphate isomerase, cytosolic OS=Oryza sativa subsp. japonica GN=TPI PE=1 SV=3)

HSP 1 Score: 85.1149 bits (209), Expect = 1.191e-16
Identity = 41/44 (93.18%), Postives = 42/44 (95.45%), Query Frame = 2
Query:    2 IYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSATVK 133
            IYGGSV GANCKELAA+PDVDGFLVGGASLKPEFIDII SATVK
Sbjct:  208 IYGGSVTGANCKELAAKPDVDGFLVGGASLKPEFIDIINSATVK 251          
BLAST of DR911781 vs. ExPASy Swiss-Prot
Match: TPIS_COPJA (Triosephosphate isomerase, cytosolic OS=Coptis japonica PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.191e-16
Identity = 40/46 (86.96%), Postives = 43/46 (93.48%), Query Frame = 2
Query:    2 IYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSATVKKN 139
            IYGGSVNGAN KELA QPD+DGFLVGGASLKPEF+DIIKSATVK +
Sbjct:  208 IYGGSVNGANSKELAGQPDIDGFLVGGASLKPEFVDIIKSATVKSS 253          
BLAST of DR911781 vs. ExPASy Swiss-Prot
Match: TPIS_SECCE (Triosephosphate isomerase, cytosolic OS=Secale cereale PE=2 SV=3)

HSP 1 Score: 83.5741 bits (205), Expect = 3.467e-16
Identity = 40/44 (90.91%), Postives = 42/44 (95.45%), Query Frame = 2
Query:    2 IYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSATVK 133
            IYGGSV GA+CKELAAQPDVDGFLVGGASLKPEFIDII +ATVK
Sbjct:  208 IYGGSVTGASCKELAAQPDVDGFLVGGASLKPEFIDIINAATVK 251          
BLAST of DR911781 vs. ExPASy Swiss-Prot
Match: TPIS_MAIZE (Triosephosphate isomerase, cytosolic OS=Zea mays PE=3 SV=3)

HSP 1 Score: 83.1889 bits (204), Expect = 4.528e-16
Identity = 40/44 (90.91%), Postives = 41/44 (93.18%), Query Frame = 2
Query:    2 IYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSATVK 133
            IYGGSV  ANCKELAAQPDVDGFLVGGASLKPEFIDII +ATVK
Sbjct:  208 IYGGSVTAANCKELAAQPDVDGFLVGGASLKPEFIDIINAATVK 251          
BLAST of DR911781 vs. ExPASy Swiss-Prot
Match: TPIS_ARATH (Triosephosphate isomerase, cytosolic OS=Arabidopsis thaliana GN=CTIMC PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 1.009e-15
Identity = 39/46 (84.78%), Postives = 41/46 (89.13%), Query Frame = 2
Query:    2 IYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSATVKKN 139
            IYGGSVNG NCKEL  Q DVDGFLVGGASLKPEFIDIIK+A VKK+
Sbjct:  208 IYGGSVNGGNCKELGGQADVDGFLVGGASLKPEFIDIIKAAEVKKS 253          
BLAST of DR911781 vs. ExPASy Swiss-Prot
Match: TPIS_LACSA (Triosephosphate isomerase, cytosolic (Fragment) OS=Lactuca sativa PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.935e-15
Identity = 38/46 (82.61%), Postives = 42/46 (91.30%), Query Frame = 2
Query:    2 IYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSATVKKN 139
            IYGGSV+G+NCKEL  Q DVDGFLVGGASLKPEFIDIIK+A VKK+
Sbjct:  149 IYGGSVSGSNCKELGGQTDVDGFLVGGASLKPEFIDIIKAAEVKKS 194          
BLAST of DR911781 vs. ExPASy Swiss-Prot
Match: TPIS_HORVU (Triosephosphate isomerase, cytosolic OS=Hordeum vulgare PE=1 SV=3)

HSP 1 Score: 78.5666 bits (192), Expect = 1.115e-14
Identity = 38/44 (86.36%), Postives = 40/44 (90.91%), Query Frame = 2
Query:    2 IYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSATVK 133
            IYGGSV GA+CKELAAQ DVDGFLVGGASLKPEFIDII +A VK
Sbjct:  208 IYGGSVTGASCKELAAQADVDGFLVGGASLKPEFIDIINAAAVK 251          
BLAST of DR911781 vs. ExPASy Swiss-Prot
Match: TPIS_RAT (Triosephosphate isomerase OS=Rattus norvegicus GN=Tpi1 PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 1.610e-13
Identity = 34/40 (85.00%), Postives = 37/40 (92.50%), Query Frame = 2
Query:    2 IYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 121
            IYGGSV GA CKELA+QPDVDGFLVGGASLKPEF+DII +
Sbjct:  208 IYGGSVTGATCKELASQPDVDGFLVGGASLKPEFVDIINA 247          
BLAST of DR911781 vs. ExPASy Swiss-Prot
Match: TPIS_RABIT (Triosephosphate isomerase OS=Oryctolagus cuniculus GN=TPI1 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.610e-13
Identity = 34/40 (85.00%), Postives = 37/40 (92.50%), Query Frame = 2
Query:    2 IYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 121
            IYGGSV GA CKELA+QPDVDGFLVGGASLKPEF+DII +
Sbjct:  207 IYGGSVTGATCKELASQPDVDGFLVGGASLKPEFVDIINA 246          
The following BLAST results are available for this feature:
BLAST of DR911781 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
TPIS_PETHY2.401e-1789.13Triosephosphate isomerase, cytosolic OS=Petunia hy... [more]
TPIS_ORYSJ1.191e-1693.18Triosephosphate isomerase, cytosolic OS=Oryza sati... [more]
TPIS_COPJA1.191e-1686.96Triosephosphate isomerase, cytosolic OS=Coptis jap... [more]
TPIS_SECCE3.467e-1690.91Triosephosphate isomerase, cytosolic OS=Secale cer... [more]
TPIS_MAIZE4.528e-1690.91Triosephosphate isomerase, cytosolic OS=Zea mays P... [more]
TPIS_ARATH1.009e-1584.78Triosephosphate isomerase, cytosolic OS=Arabidopsi... [more]
TPIS_LACSA2.935e-1582.61Triosephosphate isomerase, cytosolic (Fragment) OS... [more]
TPIS_HORVU1.115e-1486.36Triosephosphate isomerase, cytosolic OS=Hordeum vu... [more]
TPIS_RAT1.610e-1385.00Triosephosphate isomerase OS=Rattus norvegicus GN=... [more]
TPIS_RABIT1.610e-1385.00Triosephosphate isomerase OS=Oryctolagus cuniculus... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_19909 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-18_C07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR911781 ID=DR911781; Name=DR911781; organism=Citrus sinensis; type=EST; length=243bp
CATCTACGGAGGTTCTGTAAATGGAGCAAATTGCAAAGAATTGGCAGCAC
AACCTGATGTAGATGGATTTTTGGTTGGTGGAGCTTCTCTAAAGCCGGAG
TTCATCGATATTATCAAGTCTGCCACAGTGAAGAAGAATTGAAGTTAAGA
CCAAGCTACTCGGCTTGCTGATGCCTGCAGTTTTCTCTGTTATGCTTTCT
GGAAACTAGCGTTGTAATTTTTGTGGTCTGTTAAGTGTTACCA
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