FC871204
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC871204 vs. ExPASy Swiss-Prot
Match: RL18_DICDI (60S ribosomal protein L18 OS=Dictyostelium discoideum GN=rpl18 PE=3 SV=1) HSP 1 Score: 177.178 bits (448), Expect = 6.270e-44 Identity = 90/154 (58.44%), Postives = 111/154 (72.08%), Query Frame = 2 Query: 59 NPYHTLLIRLYKFLARRTESAFNKTILKRLHQSRTNRYPISVSRVVKNLKGQD--KVAVCVTTVTNDARLLVVPKLTIVALKFTEKARERIVAAGGQAWTFDQLALKNPTGKNTVLLRG-AKRREALRHFGPAPGAKGSHTAPYVRGHGKKQER 511 NPYH LL++LY+FLARRT S FNK +LKRL Q++TNR P+S+SR+ +K + K+AVCV TV +D RLL PKLT+ AL+FTE AR RIV AGG+A +FDQ AL P G NT L++G K RE +HFG APG GSH PYVR G K +R Sbjct: 22 NPYHALLVKLYRFLARRTNSKFNKVVLKRLLQTKTNRPPVSISRIANLMKDRKSGKIAVCVGTVVDDERLLDCPKLTVCALRFTETARSRIVKAGGKALSFDQFALVRPRGNNTFLIKGVTKAREVYKHFGRAPGLPGSHARPYVRSEGIKFQR 175
BLAST of FC871204 vs. ExPASy Swiss-Prot
Match: RL182_ARATH (60S ribosomal protein L18-2 OS=Arabidopsis thaliana GN=RPL18B PE=2 SV=2) HSP 1 Score: 173.711 bits (439), Expect = 6.933e-43 Identity = 89/172 (51.74%), Postives = 122/172 (70.93%), Query Frame = 2 Query: 2 DLKAGGRTKNRNIKPTRTTNPYHTLLIRLYKFLARRTESAFNKTILKRLHQSRTNRYPISVSRVVKNLKG-QDKVAVCVTTVTNDARLLVVPKLTIVALKFTEKARERIVAAGGQAWTFDQLALKNPTGKNTVLLRGAKR-REALRHFGPAPGAKGSHTAPYVRGHGKKQER 511 DL AGG++K ++ + Y L ++LY+FL RRT S FN ILKRL S+ N+ P+S+SR+V+ + G +DK+AV V T+T+D R+ +P + + AL+FTE+AR RI AGG+ TFDQLAL+ P G+NTVLLRG K REA++HFGPAPG SH+ PYVR G+K E+ Sbjct: 4 DLIAGGKSKKTKRTAPKSDDVYLKLTVKLYRFLVRRTNSKFNGVILKRLFMSKVNKAPLSLSRLVEFMTGKEDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRAKGRKFEK 175
BLAST of FC871204 vs. ExPASy Swiss-Prot
Match: RL183_ARATH (60S ribosomal protein L18-3 OS=Arabidopsis thaliana GN=RPL18C PE=2 SV=1) HSP 1 Score: 171.785 bits (434), Expect = 2.634e-42 Identity = 89/172 (51.74%), Postives = 123/172 (71.51%), Query Frame = 2 Query: 2 DLKAGGRTKNRNIKPTRTTNPYHTLLIRLYKFLARRTESAFNKTILKRLHQSRTNRYPISVSRVVKNLKGQD-KVAVCVTTVTNDARLLVVPKLTIVALKFTEKARERIVAAGGQAWTFDQLALKNPTGKNTVLLRGAKR-REALRHFGPAPGAKGSHTAPYVRGHGKKQER 511 DL AGG++K ++ + Y LL++LY+FL RR+ S FN ILKRL S+ N+ P+S+SR+V+ + G+D K+AV V T+T+D R+ +P + + AL+FTE+AR RI AGG+ TFDQLAL+ P G+NTVLLRG K REA++HFGPAPG S+T PYVR G+K E+ Sbjct: 4 DLIAGGKSKKTKRTAPKSDDVYLKLLVKLYRFLVRRSNSNFNAVILKRLFMSKVNKAPLSLSRLVEFMTGKDDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSNTKPYVRHKGRKFEK 175
BLAST of FC871204 vs. ExPASy Swiss-Prot
Match: RL18_BOMMO (60S ribosomal protein L18 OS=Bombyx mori GN=RpL18 PE=2 SV=1) HSP 1 Score: 170.244 bits (430), Expect = 7.665e-42 Identity = 90/167 (53.89%), Postives = 122/167 (73.05%), Query Frame = 2 Query: 29 NRNIKPT--RTTNPYHTLLIRLYKFLARRTESAFNKTILKRLHQSRTNRYPISVSRVVKNLKGQDK---VAVCVTTVTNDARLLVVPKLTIVALKFTEKARERIVAAGGQAWTFDQLALKNPTGKNTVLLRGAKR-REALRHFGPAPGAKGSHTAPYVRGHGKKQER 511 +R ++ T ++ + Y LL++LY++LARRT + FN+ +L+RL SR NR PISVSR+ +++K + +AV V TVTND RL +PK+T+ AL TEKAR RI+AAGG+ TFDQLAL+ PTGK TVL++G + REA+RHFGPAPGA SHT PYVR G ++ R Sbjct: 10 DRKVRRTEVKSQDIYLRLLVKLYRYLARRTNAKFNQIVLRRLFMSRINRPPISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKGHEKAR 176
BLAST of FC871204 vs. ExPASy Swiss-Prot
Match: RL18_CICAR (60S ribosomal protein L18 (Fragment) OS=Cicer arietinum GN=RPL18 PE=2 SV=1) HSP 1 Score: 169.474 bits (428), Expect = 1.307e-41 Identity = 91/172 (52.91%), Postives = 120/172 (69.77%), Query Frame = 2 Query: 2 DLKAGGRTKNRNIKPTRTTNPYHTLLIRLYKFLARRTESAFNKTILKRLHQSRTNRYPISVSRVVKNLKGQD-KVAVCVTTVTNDARLLVVPKLTIVALKFTEKARERIVAAGGQAWTFDQLALKNPTGKNTVLLRGAKR-REALRHFGPAPGAKGSHTAPYVRGHGKKQER 511 DLKAGG+ K ++ + Y LL++LY+FL RRT+S FN ILKRL S+ NR P+S+SR++K ++G++ K+ V V VT+D R+ VP + + ALKFTE AR RI AGG+ TFDQLAL+ P +TVLLRG K REA++HFGPAPG SHT PYVR G+K E+ Sbjct: 1 DLKAGGKNKKTKRTSPKSNDIYLKLLVKLYRFLVRRTDSNFNAVILKRLFMSKVNRPPLSLSRLIKYMQGKEGKIGVVVGAVTDDIRVYDVPTIKVTALKFTETARARIQKAGGECLTFDQLALRLPL-TDTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFEK 171
BLAST of FC871204 vs. ExPASy Swiss-Prot
Match: RL181_ARATH (Putative 60S ribosomal protein L18-1 OS=Arabidopsis thaliana GN=RPL18A PE=2 SV=3) HSP 1 Score: 169.474 bits (428), Expect = 1.307e-41 Identity = 94/172 (54.65%), Postives = 120/172 (69.77%), Query Frame = 2 Query: 2 DLKAGGRTKNRNIKPTRTTNPYHTLLIRLYKFLARRTESAFNKTILKRLHQSRTNRYPISVSRVVKNLKGQD-KVAVCVTTVTNDARLLVVPKLTIVALKFTEKARERIVAAGGQAWTFDQLALKNPT-GKNTVLLRGAKR-REALRHFGPAPGAKGSHTAPYVRGHGKKQE 508 DL AGG++K ++ + Y LL++ ++L RRTES FN ILKRL S+ N+ P+S+SR+V+ + G+D K+AV V TVT+D R+ VP LT+ AL+FTE AR RI AGG+ TFDQLAL PT +NTVLLRG K REA++HFGPAPG SHT PYVR GKK E Sbjct: 4 DLIAGGKSKKTKRTEPKSDDVYLKLLVKANRYLVRRTESKFNAVILKRLFMSKVNKAPLSLSRLVRYMDGKDGKIAVIVGTVTDDVRIEDVPALTVTALRFTESARARIHKAGGECLTFDQLALPCPTWSENTVLLRGPKNTREAVKHFGPAPGVPHSHTKPYVRQTGKKIE 175
BLAST of FC871204 vs. ExPASy Swiss-Prot
Match: RL18A_SCHPO (60S ribosomal protein L18-A OS=Schizosaccharomyces pombe GN=rpl18a PE=1 SV=1) HSP 1 Score: 168.318 bits (425), Expect = 2.913e-41 Identity = 94/168 (55.95%), Postives = 117/168 (69.64%), Query Frame = 2 Query: 26 KNRNIKPTRTTNPYHTLLIRLYKFLARRTESAFNKTILKRLHQSRTNRYPISVSRVV-----KNLKGQDKVAVCVTTVTNDARLLVVPKLTIVALKFTEKARERIVAAGGQAWTFDQLALKNPTGKNTVLLRGAKR-REALRHFGPAPGAKGSHTAPYVRGHGKKQER 511 K++ KP + N Y LL++LY+FLARRT+S FNK ILKRL QS+TNR PIS+S++ K+ Q+K V V TVT+D R+L VPKL+I AL+FT+ AR RI+ AGG+ T DQLAL+ PTG NTVL+RG K REA RHFG P H APYVR G+K ER Sbjct: 12 KSQRSKPA-SENVYLKLLVKLYRFLARRTDSRFNKAILKRLFQSKTNRPPISISKIAALTSRKSASSQNKTTVVVGTVTDDERMLTVPKLSIAALRFTKSARARILKAGGEVLTLDQLALRAPTGSNTVLVRGKKHAREAYRHFGFGP---HKHKAPYVRSEGRKFER 175
BLAST of FC871204 vs. ExPASy Swiss-Prot
Match: RL18_SPOFR (60S ribosomal protein L18 OS=Spodoptera frugiperda GN=RpL18 PE=2 SV=1) HSP 1 Score: 166.777 bits (421), Expect = 8.475e-41 Identity = 89/167 (53.29%), Postives = 120/167 (71.86%), Query Frame = 2 Query: 29 NRNIKPT--RTTNPYHTLLIRLYKFLARRTESAFNKTILKRLHQSRTNRYPISVSRVVKNLKGQDK---VAVCVTTVTNDARLLVVPKLTIVALKFTEKARERIVAAGGQAWTFDQLALKNPTGKNTVLLRGAKR-REALRHFGPAPGAKGSHTAPYVRGHGKKQER 511 +R ++ T ++ + Y LL++LY++LARRT S FN IL+RL SR NR P+S+SR+ +++K + +AV V T+TND RL VPK+++ AL TEKAR RI+AAGG+ TFDQLAL+ PTG TVLL+G + REA+RHFGPAPGA SHT PYVR G ++ R Sbjct: 10 DRKVRRTEVKSQDVYLRLLVKLYRYLARRTNSKFNTIILRRLFMSRINRPPLSLSRLARHMKKPTREGMIAVVVGTITNDVRLYKVPKMSVAALHVTEKARARILAAGGEILTFDQLALRAPTGAKTVLLQGRRNAREAVRHFGPAPGAPRSHTKPYVRTKGHERAR 176
BLAST of FC871204 vs. ExPASy Swiss-Prot
Match: RL18_PLUXY (60S ribosomal protein L18 OS=Plutella xylostella GN=RpL18 PE=2 SV=1) HSP 1 Score: 166.777 bits (421), Expect = 8.475e-41 Identity = 86/167 (51.50%), Postives = 121/167 (72.46%), Query Frame = 2 Query: 29 NRNIKPT--RTTNPYHTLLIRLYKFLARRTESAFNKTILKRLHQSRTNRYPISVSRVVKNLKGQDK---VAVCVTTVTNDARLLVVPKLTIVALKFTEKARERIVAAGGQAWTFDQLALKNPTGKNTVLLRGAKR-REALRHFGPAPGAKGSHTAPYVRGHGKKQER 511 +R ++ T ++ + Y LL++LY++LARRT + FN+ +L+RL SR NR P+S+SR+ +++K + +AV V T+TND RL VPK+T+ AL TEKAR RI+ AGG+ TFDQLAL+ PTG+ TVL++G + REA+RHFGPAPGA SHT PYVR G +Q + Sbjct: 10 DRKVRRTEVKSQDVYLRLLVKLYRYLARRTNAKFNQIVLRRLFMSRINRPPLSLSRLARHMKKPTREGLIAVVVGTITNDTRLYKVPKMTVAALHVTEKARARILDAGGEILTFDQLALRAPTGRKTVLIQGQRNAREAVRHFGPAPGAPRSHTKPYVRSKGHEQAK 176
BLAST of FC871204 vs. ExPASy Swiss-Prot
Match: RL18_MOUSE (60S ribosomal protein L18 OS=Mus musculus GN=Rpl18 PE=2 SV=3) HSP 1 Score: 166.777 bits (421), Expect = 8.475e-41 Identity = 88/168 (52.38%), Postives = 120/168 (71.43%), Query Frame = 2 Query: 26 KNRNI--KPTRTTNPYHTLLIRLYKFLARRTESAFNKTILKRLHQSRTNRYPISVSRVVKNLK---GQDKVAVCVTTVTNDARLLVVPKLTIVALKFTEKARERIVAAGGQAWTFDQLALKNPTGKNTVLLRGAKR-REALRHFGPAPGAKGSHTAPYVRGHGKKQER 511 K+R + K ++ + Y LL++LY+FLARRT S FN+ +LKRL SRTNR P+S+SR+++ +K ++K AV V TVT+D R+L VPKL + AL+ + +AR RI+ AGG+ TFDQLAL++P G+ TVLL G ++ RE RHFG APG SHT PYVR G+K ER Sbjct: 9 KDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGRENKTAVVVGTVTDDVRILEVPKLKVCALRVSSRARSRILKAGGKILTFDQLALESPKGRGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFER 176 The following BLAST results are available for this feature:
BLAST of FC871204 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 39
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Sequences
The
following sequences are available for this feature:
EST sequence >FC871204 ID=FC871204; Name=FC871204; organism=Citrus sinensis; type=EST; length=634bpback to top |