DR911701

Overview
NameDR911701
Unique NameDR911701
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length256
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DR911701 vs. ExPASy Swiss-Prot
Match: ELOF1_ORYSJ (Transcription elongation factor 1 homolog OS=Oryza sativa subsp. japonica GN=Os07g0631100 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.624e-11
Identity = 29/33 (87.88%), Postives = 32/33 (96.97%), Query Frame = 1 
Query:    1 ESFSTTITALTEPIDIYSEWIDECERVNNLEDD 99
            E+FSTT+ ALTEPIDIYSEWIDECERVNN+EDD
Sbjct:   54 ENFSTTVNALTEPIDIYSEWIDECERVNNVEDD 86
[Close]
BLAST of DR911701 vs. ExPASy Swiss-Prot
Match: ELOF1_ARATH (Transcription elongation factor 1 homolog OS=Arabidopsis thaliana GN=At5g46030 PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.972e-11
Identity = 31/38 (81.58%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:    1 ESFSTTITALTEPIDIYSEWIDECERVNNLEDDGAYEK 114
            ESFSTTITALTE IDIYSEWIDECERVN  EDD   E+
Sbjct:   54 ESFSTTITALTEAIDIYSEWIDECERVNTAEDDVVQEE 91
The following BLAST results are available for this feature:
BLAST of DR911701 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
ELOF1_ORYSJ2.624e-1187.88Transcription elongation factor 1 homolog OS=Oryza... [more]
ELOF1_ARATH9.972e-1181.58Transcription elongation factor 1 homolog OS=Arabi... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_19829 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-09_A02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR911701 ID=DR911701; Name=DR911701; organism=Citrus sinensis; type=EST; length=256bp
GAGAGCTTCAGCACTACTATCACAGCTTTAACTGAACCAATAGACATATA
TAGTGAATGGATTGATGAATGTGAACGGGTTAACAACCTTGAAGATGACG
GTGCTTATGAGAAAGCTTGATGTCTCCTGTACTAACTGTCGGTGTTTGAA
TCTCTGTTTATGAGAAAGCTTGATGTCTCCTGTACCAACATCGGTGTTTG
AATCTCTAGTGGATGTAATTATATCTGTTCACAGAGTAGTGCTCATTTAC
ATCTGT
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