DR911661

Overview
NameDR911661
Unique NameDR911661
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length264
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR911661 vs. ExPASy Swiss-Prot
Match: RK22_PLAOC (50S ribosomal protein L22, chloroplastic OS=Platanus occidentalis GN=rpl22 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.127e-21
Identity = 54/72 (75.00%), Postives = 57/72 (79.17%), Query Frame = 2
Query:    2 LVYSAAANGIHNLGFNEGSLFIIKAE*PMGPTAKRLKPRARGRSYLIKKPTCHITIVLKDISLAEYEYRDYL 217
            LVYSAAAN  HN+GFNE  L I KAE   GPT KRLKPRARGRSY IK+PTCHITIVLKDISL E EY  +L
Sbjct:   60 LVYSAAANASHNMGFNEADLIISKAEVNEGPTMKRLKPRARGRSYPIKRPTCHITIVLKDISLDE-EYLIWL 130          
BLAST of DR911661 vs. ExPASy Swiss-Prot
Match: RK22_POPAL (50S ribosomal protein L22, chloroplastic OS=Populus alba GN=rpl22 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 4.012e-20
Identity = 50/72 (69.44%), Postives = 56/72 (77.78%), Query Frame = 2
Query:    2 LVYSAAANGIHNLGFNEGSLFIIKAE*PMGPTAKRLKPRARGRSYLIKKPTCHITIVLKDISLAEYEYRDYL 217
            LVYSAAAN  HN+G NE SL I KAE   G T K+ KPRARGRSYLIK+PTCHI+IVL+DIS  EYE  D+L
Sbjct:   59 LVYSAAANASHNMGLNEASLVISKAEVNEGATMKKFKPRARGRSYLIKRPTCHISIVLEDISYEEYE-EDFL 129          
BLAST of DR911661 vs. ExPASy Swiss-Prot
Match: RK22_EUCGG (50S ribosomal protein L22, chloroplastic OS=Eucalyptus globulus subsp. globulus GN=rpl22 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.525e-19
Identity = 53/87 (60.92%), Postives = 58/87 (66.67%), Query Frame = 2
Query:    2 LVYSAAANGIHNLGFNEGSLFIIKAE*PMGPTAKRLKPRARGRSYLIKKPTCHITIVLKDISLAEYEYRDYLDLECSKNTRLINKKK 262
            LVYSAAAN  HN+GFNE SL I KAE   G T K+LKPRARGRSY IK+PTCHI IVLKD S  E E     +  C K +    KKK
Sbjct:   60 LVYSAAANASHNMGFNEASLVISKAEVNEGTTMKKLKPRARGRSYAIKRPTCHIRIVLKDKSFYEEE-----NFFCLKQSEWKKKKK 141          
BLAST of DR911661 vs. ExPASy Swiss-Prot
Match: RK22_DAUCA (50S ribosomal protein L22, chloroplastic OS=Daucus carota GN=rpl22 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.991e-19
Identity = 53/90 (58.89%), Postives = 65/90 (72.22%), Query Frame = 2
Query:    2 LVYSAAANGIHNLGFNEGSLFIIKAE*PMGPTAKRLKPRARGRSYLIKKPTCHITIVLKDISLAEYEYR--DYLD-LECSKNTRLINKKK 262
            LVYSAAAN  +N+  NE +L I KAE   G   K+LKPRARGRS+ IK+PTCHI IV+KDISL EY+Y   D++D   CSK  +L +KKK
Sbjct:   59 LVYSAAANANYNMDSNESNLVISKAEVSEGTATKKLKPRARGRSFTIKRPTCHIAIVVKDISLDEYQYLGVDFIDSFRCSK--KLQSKKK 146          
BLAST of DR911661 vs. ExPASy Swiss-Prot
Match: RK22_POPTR (50S ribosomal protein L22, chloroplastic OS=Populus trichocarpa GN=rpl22 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.396e-19
Identity = 49/72 (68.06%), Postives = 55/72 (76.39%), Query Frame = 2
Query:    2 LVYSAAANGIHNLGFNEGSLFIIKAE*PMGPTAKRLKPRARGRSYLIKKPTCHITIVLKDISLAEYEYRDYL 217
            LVYSAAAN  HN+G NE SL I KAE   G T K+ KPRARGRSYLIK+ TCHI+IVL+DIS  EYE  D+L
Sbjct:   59 LVYSAAANASHNMGLNEASLVISKAEVNEGATMKKFKPRARGRSYLIKRQTCHISIVLEDISYEEYE-EDFL 129          
BLAST of DR911661 vs. ExPASy Swiss-Prot
Match: RK22_PELHO (50S ribosomal protein L22, chloroplastic OS=Pelargonium hortorum GN=rpl22-A PE=3 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 5.793e-19
Identity = 47/72 (65.28%), Postives = 58/72 (80.56%), Query Frame = 2
Query:    2 LVYSAAANGIHNLGFNEGSLFIIKAE*PMGPTAKRLKPRARGRSYLIKKPTCHITIVLKDISLAEYEYRDYL 217
            L+ SAAANGIHN+ F+E SL I KAE   GPTAK+ KPRA+G+SY IK+ TCHITIVL+DISL E +Y +Y+
Sbjct:   60 LISSAAANGIHNMNFDETSLIISKAEVNEGPTAKKFKPRAKGQSYPIKRSTCHITIVLRDISLNE-KYEEYI 130          
BLAST of DR911661 vs. ExPASy Swiss-Prot
Match: RK22_BUXMI (50S ribosomal protein L22, chloroplastic OS=Buxus microphylla GN=rpl22 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.793e-19
Identity = 52/87 (59.77%), Postives = 59/87 (67.82%), Query Frame = 2
Query:    2 LVYSAAANGIHNLGFNEGSLFIIKAE*PMGPTAKRLKPRARGRSYLIKKPTCHITIVLKDISLAE----------YEYRD-YLDLEC 229
            LVYSAAAN  HN+GFNE    I KAE   G + K+LKPRARGRSYLIK+PTCHITIVLKDI L E          + YR+ Y D+ C
Sbjct:   57 LVYSAAANASHNMGFNEADSVISKAEVNDGTSVKKLKPRARGRSYLIKRPTCHITIVLKDIYLDEKYIIWLRKYGWIYRNKYTDMTC 143          
BLAST of DR911661 vs. ExPASy Swiss-Prot
Match: RK22_AETGR (50S ribosomal protein L22, chloroplastic OS=Aethionema grandiflora GN=rpl22 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.882e-19
Identity = 48/72 (66.67%), Postives = 55/72 (76.39%), Query Frame = 2
Query:    2 LVYSAAANGIHNLGFNEGSLFIIKAE*PMGPTAKRLKPRARGRSYLIKKPTCHITIVLKDISLAEYEYRDYL 217
            LVYSAAAN  HN GF E +L I KAE   G T K+LKPRARGRSY IK+PTCHITIVL+DIS  + +Y +YL
Sbjct:   60 LVYSAAANASHNKGFKETNLVISKAEVNQGNTVKKLKPRARGRSYPIKRPTCHITIVLEDISFYQ-QYEEYL 130          
BLAST of DR911661 vs. ExPASy Swiss-Prot
Match: RK22_PANGI (50S ribosomal protein L22, chloroplastic OS=Panax ginseng GN=rpl22 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.686e-18
Identity = 53/88 (60.23%), Postives = 64/88 (72.73%), Query Frame = 2
Query:    2 LVYSAAANGIHNLGFNEGSLFIIKAE*PMGPTAKRLKPRARGRSYLIKKPTCHITIVLKDISLAEYEYRDYLD-LECSKNTRLINKKK 262
            LVYSAAAN  +N+  NE +L I KAE   G   K+LKPRARGRS+ IK+PTCHI+IV+KDISL EY   D+LD L  SK  +L +KKK
Sbjct:   56 LVYSAAANASYNMDSNESNLVISKAEVSEGTIVKKLKPRARGRSFPIKRPTCHISIVVKDISLDEYIEVDFLDPLRWSK--KLKSKKK 141          
BLAST of DR911661 vs. ExPASy Swiss-Prot
Match: RK22_FAGEA (50S ribosomal protein L22, chloroplastic OS=Fagopyrum esculentum subsp. ancestrale GN=rpl22 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.686e-18
Identity = 44/65 (67.69%), Postives = 51/65 (78.46%), Query Frame = 2
Query:    2 LVYSAAANGIHNLGFNEGSLFIIKAE*PMGPTAKRLKPRARGRSYLIKKPTCHITIVLKDISLAE 196
            ++YSAAAN  HN GF +  L + KAE   GPT K+LKPRARGRSYLIKKPTCHI++VLKDIS  E
Sbjct:   58 IIYSAAANAKHNKGFEKEDLLVWKAEVNKGPTRKKLKPRARGRSYLIKKPTCHISVVLKDISYYE 122          
The following BLAST results are available for this feature:
BLAST of DR911661 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
RK22_PLAOC2.127e-2175.0050S ribosomal protein L22, chloroplastic OS=Platan... [more]
RK22_POPAL4.012e-2069.4450S ribosomal protein L22, chloroplastic OS=Populu... [more]
RK22_EUCGG1.525e-1960.9250S ribosomal protein L22, chloroplastic OS=Eucaly... [more]
RK22_DAUCA1.991e-1958.8950S ribosomal protein L22, chloroplastic OS=Daucus... [more]
RK22_POPTR3.396e-1968.0650S ribosomal protein L22, chloroplastic OS=Populu... [more]
RK22_PELHO5.793e-1965.2850S ribosomal protein L22, chloroplastic OS=Pelarg... [more]
RK22_BUXMI5.793e-1959.7750S ribosomal protein L22, chloroplastic OS=Buxus ... [more]
RK22_AETGR9.882e-1966.6750S ribosomal protein L22, chloroplastic OS=Aethio... [more]
RK22_PANGI1.686e-1860.2350S ribosomal protein L22, chloroplastic OS=Panax ... [more]
RK22_FAGEA1.686e-1867.6950S ribosomal protein L22, chloroplastic OS=Fagopy... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_19789 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-10_F04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR911661 ID=DR911661; Name=DR911661; organism=Citrus sinensis; type=EST; length=264bp
ATTGGTTTATTCTGCAGCAGCAAATGGTATTCACAATCTGGGTTTCAACG
AAGGAAGTTTATTCATTATTAAAGCCGAATAGCCTATGGGTCCTACTGCG
AAAAGATTAAAACCTCGAGCCCGAGGGCGGAGTTATCTGATCAAAAAACC
CACTTGTCATATAACTATTGTTTTAAAAGATATATCCTTAGCTGAATATG
AATATAGAGACTATCTCGATCTCGAGTGCTCAAAAAACACTAGATTAATA
AATAAAAAAAAAAA
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