DR911650

Overview
NameDR911650
Unique NameDR911650
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length266
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR911650 vs. ExPASy Swiss-Prot
Match: RK22_POPAL (50S ribosomal protein L22, chloroplastic OS=Populus alba GN=rpl22 PE=3 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 7.437e-17
Identity = 31/43 (72.09%), Postives = 36/43 (83.72%), Query Frame = 1
Query:   91 GPTAKRLKPRARGRSYLIKKPTCHITIVLKDISLAEYEYRDYL 219
            G T K+ KPRARGRSYLIK+PTCHI+IVL+DIS  EYE  D+L
Sbjct:   88 GATMKKFKPRARGRSYLIKRPTCHISIVLEDISYEEYE-EDFL 129          

HSP 2 Score: 41.5874 bits (96), Expect = 7.437e-17
Identity = 20/27 (74.07%), Postives = 21/27 (77.78%), Query Frame = 2
Query:    2 KLVYSAAANGIHNLGFNEGSLFIIKAE 82
            KLVYSAAAN  HN+G NE SL I KAE
Sbjct:   58 KLVYSAAANASHNMGLNEASLVISKAE 84          
BLAST of DR911650 vs. ExPASy Swiss-Prot
Match: RK22_DAUCA (50S ribosomal protein L22, chloroplastic OS=Daucus carota GN=rpl22 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.111e-16
Identity = 37/66 (56.06%), Postives = 49/66 (74.24%), Query Frame = 1
Query:   76 SRIAMGPTAKRLKPRARGRSYLIKKPTCHITIVLKDISLAEYEYR--DYLD-LECSKNTRLINKKK 264
            + ++ G   K+LKPRARGRS+ IK+PTCHI IV+KDISL EY+Y   D++D   CSK  +L +KKK
Sbjct:   83 AEVSEGTATKKLKPRARGRSFTIKRPTCHIAIVVKDISLDEYQYLGVDFIDSFRCSK--KLQSKKK 146          

HSP 2 Score: 34.2686 bits (77), Expect = 2.111e-16
Identity = 17/27 (62.96%), Postives = 20/27 (74.07%), Query Frame = 2
Query:    2 KLVYSAAANGIHNLGFNEGSLFIIKAE 82
            KLVYSAAAN  +N+  NE +L I KAE
Sbjct:   58 KLVYSAAANANYNMDSNESNLVISKAE 84          
BLAST of DR911650 vs. ExPASy Swiss-Prot
Match: RK22_POPTR (50S ribosomal protein L22, chloroplastic OS=Populus trichocarpa GN=rpl22 PE=3 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 6.066e-16
Identity = 30/43 (69.77%), Postives = 35/43 (81.40%), Query Frame = 1
Query:   91 GPTAKRLKPRARGRSYLIKKPTCHITIVLKDISLAEYEYRDYL 219
            G T K+ KPRARGRSYLIK+ TCHI+IVL+DIS  EYE  D+L
Sbjct:   88 GATMKKFKPRARGRSYLIKRQTCHISIVLEDISYEEYE-EDFL 129          

HSP 2 Score: 41.5874 bits (96), Expect = 6.066e-16
Identity = 20/27 (74.07%), Postives = 21/27 (77.78%), Query Frame = 2
Query:    2 KLVYSAAANGIHNLGFNEGSLFIIKAE 82
            KLVYSAAAN  HN+G NE SL I KAE
Sbjct:   58 KLVYSAAANASHNMGLNEASLVISKAE 84          
BLAST of DR911650 vs. ExPASy Swiss-Prot
Match: RK22_PELHO (50S ribosomal protein L22, chloroplastic OS=Pelargonium hortorum GN=rpl22-A PE=3 SV=2)

HSP 1 Score: 62.3882 bits (150), Expect = 1.021e-15
Identity = 29/43 (67.44%), Postives = 37/43 (86.05%), Query Frame = 1
Query:   91 GPTAKRLKPRARGRSYLIKKPTCHITIVLKDISLAEYEYRDYL 219
            GPTAK+ KPRA+G+SY IK+ TCHITIVL+DISL E +Y +Y+
Sbjct:   89 GPTAKKFKPRAKGQSYPIKRSTCHITIVLRDISLNE-KYEEYI 130          

HSP 2 Score: 40.0466 bits (92), Expect = 1.021e-15
Identity = 19/27 (70.37%), Postives = 22/27 (81.48%), Query Frame = 2
Query:    2 KLVYSAAANGIHNLGFNEGSLFIIKAE 82
            KL+ SAAANGIHN+ F+E SL I KAE
Sbjct:   59 KLISSAAANGIHNMNFDETSLIISKAE 85          
BLAST of DR911650 vs. ExPASy Swiss-Prot
Match: RK22_PANGI (50S ribosomal protein L22, chloroplastic OS=Panax ginseng GN=rpl22 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 1.722e-15
Identity = 37/64 (57.81%), Postives = 48/64 (75.00%), Query Frame = 1
Query:   76 SRIAMGPTAKRLKPRARGRSYLIKKPTCHITIVLKDISLAEYEYRDYLD-LECSKNTRLINKKK 264
            + ++ G   K+LKPRARGRS+ IK+PTCHI+IV+KDISL EY   D+LD L  SK  +L +KKK
Sbjct:   80 AEVSEGTIVKKLKPRARGRSFPIKRPTCHISIVVKDISLDEYIEVDFLDPLRWSK--KLKSKKK 141          

HSP 2 Score: 34.6538 bits (78), Expect = 1.722e-15
Identity = 17/27 (62.96%), Postives = 20/27 (74.07%), Query Frame = 2
Query:    2 KLVYSAAANGIHNLGFNEGSLFIIKAE 82
            KLVYSAAAN  +N+  NE +L I KAE
Sbjct:   55 KLVYSAAANASYNMDSNESNLVISKAE 81          
BLAST of DR911650 vs. ExPASy Swiss-Prot
Match: RK22_MORIN (50S ribosomal protein L22, chloroplastic OS=Morus indica GN=rpl22 PE=3 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 4.930e-15
Identity = 30/46 (65.22%), Postives = 34/46 (73.91%), Query Frame = 1
Query:   91 GPTAKRLKPRARGRSYLIKKPTCHITIVLKDISLAEYEYRDYLDLE 228
            G T K+LKPRARGR Y IK+PTCHITIVLKD+ + E EY D    E
Sbjct:   89 GNTVKKLKPRARGRGYPIKRPTCHITIVLKDLDVEE-EYLDSFAFE 133          

HSP 2 Score: 39.6614 bits (91), Expect = 4.930e-15
Identity = 19/27 (70.37%), Postives = 21/27 (77.78%), Query Frame = 2
Query:    2 KLVYSAAANGIHNLGFNEGSLFIIKAE 82
            KLVYSAAAN  HN+ FNE +L I KAE
Sbjct:   59 KLVYSAAANANHNMRFNEANLIISKAE 85          
BLAST of DR911650 vs. ExPASy Swiss-Prot
Match: RK22_HELAN (50S ribosomal protein L22, chloroplastic OS=Helianthus annuus GN=rpl22 PE=3 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 8.306e-15
Identity = 29/42 (69.05%), Postives = 34/42 (80.95%), Query Frame = 1
Query:   76 SRIAMGPTAKRLKPRARGRSYLIKKPTCHITIVLKDISLAEY 201
            + +  G   KRLKPRARGRS+ I+KPTCHITIV+KDISL EY
Sbjct:   80 AEVNKGTIMKRLKPRARGRSFAIQKPTCHITIVMKDISLDEY 121          

HSP 2 Score: 36.1946 bits (82), Expect = 8.306e-15
Identity = 18/27 (66.67%), Postives = 20/27 (74.07%), Query Frame = 2
Query:    2 KLVYSAAANGIHNLGFNEGSLFIIKAE 82
            KLVYSAAAN   N+G NE +L I KAE
Sbjct:   55 KLVYSAAANASSNMGSNEANLVISKAE 81          
BLAST of DR911650 vs. ExPASy Swiss-Prot
Match: RK22_PIPCE (50S ribosomal protein L22, chloroplastic OS=Piper cenocladum GN=rpl22 PE=3 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 8.322e-15
Identity = 30/36 (83.33%), Postives = 31/36 (86.11%), Query Frame = 1
Query:   91 GPTAKRLKPRARGRSYLIKKPTCHITIVLKDISLAE 198
            G   KRLKPRARGRSYLIKKPTCHITIVLKD +L E
Sbjct:  100 GAVLKRLKPRARGRSYLIKKPTCHITIVLKDRTLNE 135          

HSP 2 Score: 36.965 bits (84), Expect = 8.322e-15
Identity = 17/27 (62.96%), Postives = 20/27 (74.07%), Query Frame = 2
Query:    2 KLVYSAAANGIHNLGFNEGSLFIIKAE 82
            KL+YSAAA+  HNLGF E   +I KAE
Sbjct:   70 KLLYSAAASASHNLGFKEADSYISKAE 96          
BLAST of DR911650 vs. ExPASy Swiss-Prot
Match: RK22_LACSA (50S ribosomal protein L22, chloroplastic OS=Lactuca sativa GN=rpl22 PE=3 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 1.822e-14
Identity = 29/37 (78.38%), Postives = 32/37 (86.49%), Query Frame = 1
Query:   91 GPTAKRLKPRARGRSYLIKKPTCHITIVLKDISLAEY 201
            G   KRLKPRARGRS+ I+KPTCHITIV+KDISL EY
Sbjct:   85 GTIVKRLKPRARGRSFAIQKPTCHITIVMKDISLDEY 121          

HSP 2 Score: 35.039 bits (79), Expect = 1.822e-14
Identity = 18/27 (66.67%), Postives = 20/27 (74.07%), Query Frame = 2
Query:    2 KLVYSAAANGIHNLGFNEGSLFIIKAE 82
            KLVYSAAAN   N+G NE +L I KAE
Sbjct:   55 KLVYSAAANASFNMGSNEVNLVISKAE 81          
BLAST of DR911650 vs. ExPASy Swiss-Prot
Match: RK22_GOSBA (50S ribosomal protein L22, chloroplastic OS=Gossypium barbadense GN=rpl22 PE=3 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 2.370e-14
Identity = 36/68 (52.94%), Postives = 41/68 (60.29%), Query Frame = 1
Query:   43 GFQRRKFIHY*SRIAMGPTAKRLKPRARGRSYLIKKPTCHITIVLKDISLAEYEYRD-YLDLECSKNT 243
            GF     I     +  G T KRL PRARGRSYLIK+PTCHITI LKD+   E+E  D Y+     KNT
Sbjct:   78 GFNEASLIISQVAVNEGTTLKRLNPRARGRSYLIKRPTCHITIALKDL---EFEPLDRYMLRPKPKNT 142          

HSP 2 Score: 37.7354 bits (86), Expect = 2.370e-14
Identity = 18/23 (78.26%), Postives = 18/23 (78.26%), Query Frame = 2
Query:    2 KLVYSAAANGIHNLGFNEGSLFI 70
            KLVYSAAAN  HN GFNE SL I
Sbjct:   64 KLVYSAAANARHNRGFNEASLII 86          
The following BLAST results are available for this feature:
BLAST of DR911650 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
RK22_POPAL7.437e-1772.0950S ribosomal protein L22, chloroplastic OS=Populu... [more]
RK22_DAUCA2.111e-1656.0650S ribosomal protein L22, chloroplastic OS=Daucus... [more]
RK22_POPTR6.066e-1669.7750S ribosomal protein L22, chloroplastic OS=Populu... [more]
RK22_PELHO1.021e-1567.4450S ribosomal protein L22, chloroplastic OS=Pelarg... [more]
RK22_PANGI1.722e-1557.8150S ribosomal protein L22, chloroplastic OS=Panax ... [more]
RK22_MORIN4.930e-1565.2250S ribosomal protein L22, chloroplastic OS=Morus ... [more]
RK22_HELAN8.306e-1569.0550S ribosomal protein L22, chloroplastic OS=Helian... [more]
RK22_PIPCE8.322e-1583.3350S ribosomal protein L22, chloroplastic OS=Piper ... [more]
RK22_LACSA1.822e-1478.3850S ribosomal protein L22, chloroplastic OS=Lactuc... [more]
RK22_GOSBA2.370e-1452.9450S ribosomal protein L22, chloroplastic OS=Gossyp... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_19778 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-32_E01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR911650 ID=DR911650; Name=DR911650; organism=Citrus sinensis; type=EST; length=266bp
AAAATTGGTTTATTCTGCAGCAGCAAATGGTATTCACAATCTGGGTTTCA
ACGAAGGAAGTTTATTCATTATTAAAGCCGAATAGCTATGGGTCCTACTG
CGAAAAGATTAAAACCTCGAGCCCGAGGGCGGAGTTATCTGATCAAAAAA
CCCACTTGTCATATAACTATTGTTTTAAAAGATATATCCTTAGCTGAATA
TGAATATAGAGACTATCTCGATCTCGAGTGCTCAAAAAACACTAGATTAA
TAAATAAAAAAAAAAA
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