FC871195

Overview
NameFC871195
Unique NameFC871195
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length484
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6647 contig Csv1_Contig6647:31..514. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC871195 vs. ExPASy Swiss-Prot
Match: RL321_ARATH (60S ribosomal protein L32-1 OS=Arabidopsis thaliana GN=RPL32A PE=2 SV=2)

HSP 1 Score: 175.637 bits (444), Expect = 9.743e-44
Identity = 86/100 (86.00%), Postives = 91/100 (91.00%), Query Frame = 3
Query:    9 RRPKGNDPRARRKPKGRPLMPNIGYGSDKKTRHYLPNGFKKFVVHNANELELLMMHNRTYCAEIAHNVSTKKRKEIDERAAQLDVVVTNKLARLRSQEEE 308
            RRPKG D R RRK KG  LMPN+GYGSDKKTRHYLPNGFKKFVVHN +ELELLMMHNRTYCAEIAHNVSTKKRK I ERA+QLDVVVTN+LARLRSQE+E
Sbjct:   34 RRPKGIDSRVRRKFKGVTLMPNVGYGSDKKTRHYLPNGFKKFVVHNTSELELLMMHNRTYCAEIAHNVSTKKRKAIVERASQLDVVVTNRLARLRSQEDE 133          
BLAST of FC871195 vs. ExPASy Swiss-Prot
Match: RL322_ARATH (60S ribosomal protein L32-2 OS=Arabidopsis thaliana GN=RPL32B PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 6.315e-43
Identity = 83/100 (83.00%), Postives = 90/100 (90.00%), Query Frame = 3
Query:    9 RRPKGNDPRARRKPKGRPLMPNIGYGSDKKTRHYLPNGFKKFVVHNANELELLMMHNRTYCAEIAHNVSTKKRKEIDERAAQLDVVVTNKLARLRSQEEE 308
            RRPKG D R RRK KG  LMPN+GYGSDKKTRHYLPNGFKKF+VHN +ELELLMMHNRTYCAEIAHN+STKKRK I ERA+QLDVVV+NKL RLRSQE+E
Sbjct:   34 RRPKGIDSRVRRKFKGVTLMPNVGYGSDKKTRHYLPNGFKKFIVHNTSELELLMMHNRTYCAEIAHNISTKKRKAIVERASQLDVVVSNKLGRLRSQEDE 133          
BLAST of FC871195 vs. ExPASy Swiss-Prot
Match: RL32_SPOFR (60S ribosomal protein L32 OS=Spodoptera frugiperda GN=RpL32 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 6.998e-34
Identity = 70/100 (70.00%), Postives = 80/100 (80.00%), Query Frame = 3
Query:    9 RRPKGNDPRARRKPKGRPLMPNIGYGSDKKTRHYLPNGFKKFVVHNANELELLMMHNRTYCAEIAHNVSTKKRKEIDERAAQLDVVVTNKLARLRSQEEE 308
            R+P+G D R RR+ KG+ LMPNIGYGS+KKTRH LPNGF+K +VHN  ELE+LMM NR YCAEIAH VS+KKRK I ERA QL + VTN  ARLRSQE E
Sbjct:   35 RKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLPNGFRKVLVHNVRELEILMMQNRKYCAEIAHGVSSKKRKTIVERAQQLSIRVTNSAARLRSQENE 134          
BLAST of FC871195 vs. ExPASy Swiss-Prot
Match: RL32_DROYA (60S ribosomal protein L32 OS=Drosophila yakuba GN=RpL32 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.559e-33
Identity = 70/102 (68.63%), Postives = 80/102 (78.43%), Query Frame = 3
Query:    3 KGRRPKGNDPRARRKPKGRPLMPNIGYGSDKKTRHYLPNGFKKFVVHNANELELLMMHNRTYCAEIAHNVSTKKRKEIDERAAQLDVVVTNKLARLRSQEEE 308
            K R+PKG D R RR+ KG+ LMPNIGYGS+K+TRH LP GFKKF+VHN  ELE+L+M NR YC EIAH VS+KKRKEI ERA QL V +TN   RLRSQE E
Sbjct:   33 KWRKPKGIDNRVRRRFKGQYLMPNIGYGSNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRVYCGEIAHGVSSKKRKEIVERAKQLSVRLTNPNGRLRSQENE 134          
BLAST of FC871195 vs. ExPASy Swiss-Prot
Match: RL32_DROSI (60S ribosomal protein L32 OS=Drosophila simulans GN=RpL32 PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.559e-33
Identity = 70/102 (68.63%), Postives = 80/102 (78.43%), Query Frame = 3
Query:    3 KGRRPKGNDPRARRKPKGRPLMPNIGYGSDKKTRHYLPNGFKKFVVHNANELELLMMHNRTYCAEIAHNVSTKKRKEIDERAAQLDVVVTNKLARLRSQEEE 308
            K R+PKG D R RR+ KG+ LMPNIGYGS+K+TRH LP GFKKF+VHN  ELE+L+M NR YC EIAH VS+KKRKEI ERA QL V +TN   RLRSQE E
Sbjct:   33 KWRKPKGIDNRVRRRFKGQYLMPNIGYGSNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRVYCGEIAHGVSSKKRKEIVERAKQLSVRLTNPNGRLRSQENE 134          
BLAST of FC871195 vs. ExPASy Swiss-Prot
Match: RL32_DROME (60S ribosomal protein L32 OS=Drosophila melanogaster GN=RpL32 PE=1 SV=3)

HSP 1 Score: 141.739 bits (356), Expect = 1.559e-33
Identity = 70/102 (68.63%), Postives = 80/102 (78.43%), Query Frame = 3
Query:    3 KGRRPKGNDPRARRKPKGRPLMPNIGYGSDKKTRHYLPNGFKKFVVHNANELELLMMHNRTYCAEIAHNVSTKKRKEIDERAAQLDVVVTNKLARLRSQEEE 308
            K R+PKG D R RR+ KG+ LMPNIGYGS+K+TRH LP GFKKF+VHN  ELE+L+M NR YC EIAH VS+KKRKEI ERA QL V +TN   RLRSQE E
Sbjct:   33 KWRKPKGIDNRVRRRFKGQYLMPNIGYGSNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRVYCGEIAHGVSSKKRKEIVERAKQLSVRLTNPNGRLRSQENE 134          
BLAST of FC871195 vs. ExPASy Swiss-Prot
Match: RL32_DROAC (60S ribosomal protein L32 OS=Drosophila acanthoptera GN=RpL32 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 2.659e-33
Identity = 70/102 (68.63%), Postives = 80/102 (78.43%), Query Frame = 3
Query:    3 KGRRPKGNDPRARRKPKGRPLMPNIGYGSDKKTRHYLPNGFKKFVVHNANELELLMMHNRTYCAEIAHNVSTKKRKEIDERAAQLDVVVTNKLARLRSQEEE 308
            K R+PKG D R RR+ KG+ LMPNIGYGS+K+TRH LP GFKKF+VHN  ELE+L+M NR YC EIAH VS+ KRKEI ERA QL V +TN  ARLRSQE E
Sbjct:   33 KWRKPKGIDNRVRRRFKGQYLMPNIGYGSNKRTRHMLPTGFKKFLVHNVRELEVLLMQNREYCGEIAHGVSSNKRKEIVERAKQLSVRLTNPNARLRSQENE 134          
BLAST of FC871195 vs. ExPASy Swiss-Prot
Match: RL32_DROPS (60S ribosomal protein L32 OS=Drosophila pseudoobscura pseudoobscura GN=RpL32 PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 3.473e-33
Identity = 69/102 (67.65%), Postives = 80/102 (78.43%), Query Frame = 3
Query:    3 KGRRPKGNDPRARRKPKGRPLMPNIGYGSDKKTRHYLPNGFKKFVVHNANELELLMMHNRTYCAEIAHNVSTKKRKEIDERAAQLDVVVTNKLARLRSQEEE 308
            K R+PKG D R RR+ KG+ LMPNIGYGS+K+TRH LP GFKKF+VHN  ELE+L+M NR YC EIAH VS+KKRKEI ERA QL + +TN   RLRSQE E
Sbjct:   33 KWRKPKGIDNRVRRRFKGQYLMPNIGYGSNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRVYCGEIAHAVSSKKRKEIVERAKQLSIRLTNPNGRLRSQENE 134          
BLAST of FC871195 vs. ExPASy Swiss-Prot
Match: RL32_DROPE (60S ribosomal protein L32 OS=Drosophila persimilis GN=RpL32 PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 3.473e-33
Identity = 69/102 (67.65%), Postives = 80/102 (78.43%), Query Frame = 3
Query:    3 KGRRPKGNDPRARRKPKGRPLMPNIGYGSDKKTRHYLPNGFKKFVVHNANELELLMMHNRTYCAEIAHNVSTKKRKEIDERAAQLDVVVTNKLARLRSQEEE 308
            K R+PKG D R RR+ KG+ LMPNIGYGS+K+TRH LP GFKKF+VHN  ELE+L+M NR YC EIAH VS+KKRKEI ERA QL + +TN   RLRSQE E
Sbjct:   33 KWRKPKGIDNRVRRRFKGQYLMPNIGYGSNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRVYCGEIAHAVSSKKRKEIVERAKQLSIRLTNPNGRLRSQENE 134          
BLAST of FC871195 vs. ExPASy Swiss-Prot
Match: RL32_DROMI (60S ribosomal protein L32 OS=Drosophila miranda GN=RpL32 PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 3.473e-33
Identity = 69/102 (67.65%), Postives = 80/102 (78.43%), Query Frame = 3
Query:    3 KGRRPKGNDPRARRKPKGRPLMPNIGYGSDKKTRHYLPNGFKKFVVHNANELELLMMHNRTYCAEIAHNVSTKKRKEIDERAAQLDVVVTNKLARLRSQEEE 308
            K R+PKG D R RR+ KG+ LMPNIGYGS+K+TRH LP GFKKF+VHN  ELE+L+M NR YC EIAH VS+KKRKEI ERA QL + +TN   RLRSQE E
Sbjct:   33 KWRKPKGIDNRVRRRFKGQYLMPNIGYGSNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRVYCGEIAHAVSSKKRKEIVERAKQLSIRLTNPNGRLRSQENE 134          
The following BLAST results are available for this feature:
BLAST of FC871195 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
RL321_ARATH9.743e-4486.0060S ribosomal protein L32-1 OS=Arabidopsis thalian... [more]
RL322_ARATH6.315e-4383.0060S ribosomal protein L32-2 OS=Arabidopsis thalian... [more]
RL32_SPOFR6.998e-3470.0060S ribosomal protein L32 OS=Spodoptera frugiperda... [more]
RL32_DROYA1.559e-3368.6360S ribosomal protein L32 OS=Drosophila yakuba GN=... [more]
RL32_DROSI1.559e-3368.6360S ribosomal protein L32 OS=Drosophila simulans G... [more]
RL32_DROME1.559e-3368.6360S ribosomal protein L32 OS=Drosophila melanogast... [more]
RL32_DROAC2.659e-3368.6360S ribosomal protein L32 OS=Drosophila acanthopte... [more]
RL32_DROPS3.473e-3367.6560S ribosomal protein L32 OS=Drosophila pseudoobsc... [more]
RL32_DROPE3.473e-3367.6560S ribosomal protein L32 OS=Drosophila persimilis... [more]
RL32_DROMI3.473e-3367.6560S ribosomal protein L32 OS=Drosophila miranda GN... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK3DC06FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK3DC06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871195 ID=FC871195; Name=FC871195; organism=Citrus sinensis; type=EST; length=484bp
AAAAAGGGCGAAGGCCGAAGGGAAACGACCCACGAGCCAGGAGAAAGCCC
AAAGGACGTCCTCTGATGCCCAATATTGGCTACGGCTCGGACAAGAAAAC
ACGCCACTATCTGCCCAATGGATTCAAGAAGTTTGTTGTGCACAATGCCA
ATGAACTGGAACTCTTGATGATGCACAACAGGACTTATTGCGCTGAGATA
GCCCACAACGTATCAACCAAGAAGAGAAAGGAGATTGACGAGCGCGCTGC
ACAATTGGATGTTGTGGTCACCAACAAATTGGCCAGGTTGCGCAGCCAGG
AGGAGGAGTAAAAATTGGTTTCTATATTTTATGTTAGTGTTTGCTTTTGG
CCAAATGTTTCCTAGGTTGTCTTTGGAATGGATGAACATTTCCAGGGTTG
AATTATGATGTATTTTCTATTTTTGTCACCTGAATGATATTTTGAATTTG
TTGTTTTTTGCGGAGCATGATTAATGTTATGTCA
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