FC871194

Overview
NameFC871194
Unique NameFC871194
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length505
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9666 contig Csv1_Contig9666:1409..1913. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC871194 vs. ExPASy Swiss-Prot
Match: ZFNL_PEA (Zinc finger CCCH domain-containing protein ZFN-like OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 2.879e-23
Identity = 57/87 (65.52%), Postives = 64/87 (73.56%), Query Frame = 2 
Query:    2 FYSPYKICQFGPSCKFDDTMGIFIYNLSVPSSADAPVRRFLGSSSATGALDLSSEGLIEAGSG--RRLSLPETRQMSSGDDEIDTEG 256
            FYS Y IC+FGPSCKFD  MGIF YN++ P  AD P RR LGSSS T AL LSSEGL+E+G+   RRLSL ETR +  GDD ID EG
Sbjct:  332 FYSRYGICKFGPSCKFDHPMGIFTYNVASP-LADTPGRRLLGSSSGTAALSLSSEGLVESGTAKPRRLSLSETRPIPPGDDNIDDEG 417
The following BLAST results are available for this feature:
BLAST of FC871194 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ZFNL_PEA2.879e-2365.52Zinc finger CCCH domain-containing protein ZFN-lik... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAK3DC05FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK3DC05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871194 ID=FC871194; Name=FC871194; organism=Citrus sinensis; type=EST; length=505bp
CTTCTACTCTCCCTATAAAATATGCCAGTTTGGTCCAAGTTGCAAGTTTG
ATGATACAATGGGAATTTTTATATACAATCTCTCTGTCCCATCTTCAGCT
GATGCCCCGGTCCGACGATTTTTGGGGTCATCATCTGCAACTGGTGCATT
AGATTTATCGTCGGAAGGCCTAATTGAAGCAGGCTCAGGCAGGCGACTTT
CGTTACCTGAGACTAGACAGATGTCTTCCGGTGATGATGAGATTGACACA
GAGGGATAAGCAGTGTCTCAAGTGATGCGCTGGTTACTTTTCCACGATAT
TTGATTGGACAGTGAATTTTTCTGTAAATTCATTTCCGTTGCTGGAGATG
TACAGATTCATGTCAAGTTCATTATGTTCATCTGAAAATACAATTCAGTT
GACAGTCTTGGCTCTGAATTTCATGTTGCTGCTTTGTATAAAAATCTGAA
AATATTGTCACAATTGGTAGAACCCAATGTGAACATTTCATCTTTCCTGA
AAAAA
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