FC871178

Overview
NameFC871178
Unique NameFC871178
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length451
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6855 contig Csv1_Contig6855:321..771. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC871178 vs. ExPASy Swiss-Prot
Match: PRU1_PRUAR (Major allergen Pru ar 1 OS=Prunus armeniaca PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 6.631e-17
Identity = 44/86 (51.16%), Postives = 59/86 (68.60%), Query Frame = 1
Query:    1 LDKENKIYNYTAIEGEGDANIPTIDHVSYETKVVGTPDGGSKSTVVIKFYPKPGAEIKEEQVKAGLEKEKGIFKALEAYALANPNA 258
            +DK+N  Y+YT IEG  DA    I++++Y+ K+V +PDGGS       ++ K   EIKEEQVKAG EK  G+FK +EAY LANP+A
Sbjct:   75 IDKDNLSYSYTLIEG--DALSDVIENIAYDIKLVASPDGGSIVKTTSHYHTKGDVEIKEEQVKAGKEKAAGLFKLVEAYLLANPDA 158          
BLAST of FC871178 vs. ExPASy Swiss-Prot
Match: PRU1_PRUAV (Major allergen Pru av 1 OS=Prunus avium GN=PRUA1 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.806e-14
Identity = 41/86 (47.67%), Postives = 54/86 (62.79%), Query Frame = 1
Query:    1 LDKENKIYNYTAIEGEGDANIPTIDHVSYETKVVGTPDGGSKSTVVIKFYPKPGAEIKEEQVKAGLEKEKGIFKALEAYALANPNA 258
            +DKEN  Y+YT IEG  DA   T++ +SYETK+V +P GGS       ++ K   EIKEE VKAG EK   +FK +E Y   +P+A
Sbjct:   75 IDKENYSYSYTLIEG--DALGDTLEKISYETKLVASPSGGSIIKSTSHYHTKGNVEIKEEHVKAGKEKASNLFKLIETYLKGHPDA 158          
BLAST of FC871178 vs. ExPASy Swiss-Prot
Match: PR1_MEDSA (Class-10 pathogenesis-related protein 1 OS=Medicago sativa GN=MSPR10-1 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.690e-12
Identity = 34/85 (40.00%), Postives = 54/85 (63.53%), Query Frame = 1
Query:    1 LDKENKIYNYTAIEGEGDANIPTIDHVSYETKVVGTPDGGSKSTVVIKFYPKPGAEIKEEQVKAGLEKEKGIFKALEAYALANPN 255
            +D  N  YNY+ + G G  +  T++ +S+E+K+   PDGGS + + +K++ K  A   EE++K G  +  G+FKALE Y LANP+
Sbjct:   74 VDDVNFAYNYSIVGGGGLPD--TVEKISFESKLSAGPDGGSTAKLTVKYFTKGDAAPSEEEIKGGKARGDGLFKALEGYVLANPD 156          
BLAST of FC871178 vs. ExPASy Swiss-Prot
Match: MAL12_MALDO (Major allergen Mal d 1 OS=Malus domestica PE=1 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 1.869e-11
Identity = 40/86 (46.51%), Postives = 53/86 (61.63%), Query Frame = 1
Query:    1 LDKENKIYNYTAIEGEGDANIPTIDHVSYETKVVGTPDGGSKSTVVIKFYPKPGAEIKEEQVKAGLEKEKGIFKALEAYALANPNA 258
            +D+ N  Y YT IEG  DA   TI+ VSYETK+V +   GS    +  ++ K   EIKEE VKAG EK  G+FK +E+Y   +P+A
Sbjct:   75 VDEANYSYAYTLIEG--DALTDTIEKVSYETKLVAS-GSGSIIKSISHYHTKGDVEIKEEHVKAGKEKAHGLFKLIESYLKGHPDA 157          
BLAST of FC871178 vs. ExPASy Swiss-Prot
Match: DRR4_PEA (Disease resistance response protein DRRG49-C OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 7.102e-11
Identity = 34/85 (40.00%), Postives = 53/85 (62.35%), Query Frame = 1
Query:    1 LDKENKIYNYTAIEGEGDANIPTIDHVSYETKVVGTPDGGSKSTVVIKFYPKPGAEIKEEQVKAGLEKEKGIFKALEAYALANPN 255
            +D  N   NY+ + G G  +  T++ +S+E K+   P+GGS + + +K+Y K  A   EE++K G  K +GIFKALE Y +ANP+
Sbjct:   74 VDDANWANNYSIVGGVGLPD--TVEKISFEAKLSAGPNGGSIAKLSVKYYTKGDAIPSEEEIKNGKAKGEGIFKALEGYCVANPD 156          
BLAST of FC871178 vs. ExPASy Swiss-Prot
Match: MAL11_MALDO (Major allergen Mal d 1 OS=Malus domestica GN=MALD1 PE=1 SV=2)

HSP 1 Score: 65.855 bits (159), Expect = 9.275e-11
Identity = 39/88 (44.32%), Postives = 55/88 (62.50%), Query Frame = 1
Query:    1 LDKENKIYNYTAIEGEGDANIPTIDHVSYETKVVGTPDGGSKSTV--VIKFYPKPGAEIKEEQVKAGLEKEKGIFKALEAYALANPNA 258
            +D+ +  Y+YT IEG  DA   TI+ +SYETK+V     GS ST+  +  ++ K   EIKEE VK G EK  G+FK +E+Y   +P+A
Sbjct:   75 IDEASYSYSYTLIEG--DALTDTIEKISYETKLVAC---GSGSTIKSISHYHTKGNIEIKEEHVKVGKEKAHGLFKLIESYLKDHPDA 157          
The following BLAST results are available for this feature:
BLAST of FC871178 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
PRU1_PRUAR6.631e-1751.16Major allergen Pru ar 1 OS=Prunus armeniaca PE=1 S... [more]
PRU1_PRUAV1.806e-1447.67Major allergen Pru av 1 OS=Prunus avium GN=PRUA1 P... [more]
PR1_MEDSA1.690e-1240.00Class-10 pathogenesis-related protein 1 OS=Medicag... [more]
MAL12_MALDO1.869e-1146.51Major allergen Mal d 1 OS=Malus domestica PE=1 SV=... [more]
DRR4_PEA7.102e-1140.00Disease resistance response protein DRRG49-C OS=Pi... [more]
MAL11_MALDO9.275e-1144.32Major allergen Mal d 1 OS=Malus domestica GN=MALD1... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAK3DB11FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK3DB11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871178 ID=FC871178; Name=FC871178; organism=Citrus sinensis; type=EST; length=451bp
TTGGACAAAGAGAACAAGATATACAATTACACGGCAATTGAAGGTGAGGG
TGATGCTAACATCCCTACTATTGATCATGTTTCTTATGAGACTAAGGTTG
TGGGCACCCCTGACGGAGGAAGCAAGAGCACCGTTGTTATCAAGTTCTAT
CCCAAACCAGGTGCCGAGATTAAGGAAGAGCAGGTTAAGGCAGGCTTGGA
AAAGGAGAAGGGAATTTTTAAGGCTCTGGAAGCCTATGCCTTGGCAAACC
CGAATGCCGTATAAGCTCTTACATCAACACTTCACCGCACTTGCGTCGCC
TTTGTTGCAACATTATGAATAATCATGTTTATGGCTTCCGTATGTCGTGT
CTCTTTGTTTTCAAATATGCCAATTTATATAATTGGCTTTTGGCTAAATA
AAAAAAAAAAAAAGAGTTTGCTTTTCCCTTAAAAAAAAAAAAAAAAAAAA
A
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