DR911267

Overview
NameDR911267
Unique NameDR911267
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length319
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR911267 vs. ExPASy Swiss-Prot
Match: SNAK2_SOLTU (Snakin-2 OS=Solanum tuberosum GN=SN2 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.532e-19
Identity = 38/53 (71.70%), Postives = 41/53 (77.36%), Query Frame = 3
Query:    3 RCSLHSRPNLCNRACGTCCVRCKCVPPGTAGNRELCGSCYTDMTTHGNRTKCP 161
            RC L SRP LCNRACGTCC RC CVPPGT+GN E C  CY  +TTHGN+ KCP
Sbjct:   53 RCRLSSRPRLCNRACGTCCARCNCVPPGTSGNTETC-PCYASLTTHGNKRKCP 104          
BLAST of DR911267 vs. ExPASy Swiss-Prot
Match: GASA1_ARATH (Gibberellin-regulated protein 1 OS=Arabidopsis thaliana GN=GASA1 PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 6.896e-17
Identity = 35/53 (66.04%), Postives = 38/53 (71.70%), Query Frame = 3
Query:    3 RCSLHSRPNLCNRACGTCCVRCKCVPPGTAGNRELCGSCYTDMTTHGNRTKCP 161
            RC L  RP LC+RACGTCC RC CVPPGT GN + C  CY  +TTHG R KCP
Sbjct:   47 RCRLSRRPRLCHRACGTCCYRCNCVPPGTYGNYDKC-QCYASLTTHGGRRKCP 98          
BLAST of DR911267 vs. ExPASy Swiss-Prot
Match: GASA3_ARATH (Gibberellin-regulated protein 3 OS=Arabidopsis thaliana GN=GASA3 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.176e-16
Identity = 36/53 (67.92%), Postives = 38/53 (71.70%), Query Frame = 3
Query:    3 RCSLHSRPNLCNRACGTCCVRCKCVPPGTAGNRELCGSCYTDMTTHGNRTKCP 161
            RCS  SRPNLC RAC +CC RC CVPPGTAGN  LC  CY  +TT G R KCP
Sbjct:   48 RCSKSSRPNLCLRACNSCCYRCNCVPPGTAGNHHLC-PCYASITTRGGRLKCP 99          
BLAST of DR911267 vs. ExPASy Swiss-Prot
Match: GASA2_ARATH (Gibberellin-regulated protein 2 OS=Arabidopsis thaliana GN=GASA2 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.218e-15
Identity = 34/53 (64.15%), Postives = 37/53 (69.81%), Query Frame = 3
Query:    3 RCSLHSRPNLCNRACGTCCVRCKCVPPGTAGNRELCGSCYTDMTTHGNRTKCP 161
            RCS  SR  LC RAC +CC RC CVPPGT+GN  LC  CY  +TTHG R KCP
Sbjct:   48 RCSKSSRTKLCLRACNSCCSRCNCVPPGTSGNTHLC-PCYASITTHGGRLKCP 99          
The following BLAST results are available for this feature:
BLAST of DR911267 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
SNAK2_SOLTU2.532e-1971.70Snakin-2 OS=Solanum tuberosum GN=SN2 PE=1 SV=1[more]
GASA1_ARATH6.896e-1766.04Gibberellin-regulated protein 1 OS=Arabidopsis tha... [more]
GASA3_ARATH1.176e-1667.92Gibberellin-regulated protein 3 OS=Arabidopsis tha... [more]
GASA2_ARATH2.218e-1564.15Gibberellin-regulated protein 2 OS=Arabidopsis tha... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_19395 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-43_D12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR911267 ID=DR911267; Name=DR911267; organism=Citrus sinensis; type=EST; length=319bp
AGAGGTGCAGTCTTCACTCAAGGCCAAACTTGTGTAACAGAGCATGCGGC
ACGTGTTGTGTAAGATGCAAGTGCGTGCCACCTGGCACCGCGGGTAACAG
GGAGCTTTGTGGGAGTTGCTATACTGACATGACTACCCACGGAAACAGGA
CTAAGTGCCCATAGGCCCATGGGCTTCTGACTCCAGACTGGCCTAAACCC
ATCTGGGTTGTACATATCTTTTCTCTTTTCTCTTGGAACTTTTGTAACCT
AAGTGCGACTGTTTAAAAGTGGGCTATGGGCTGTCTAATAATGATTATAA
TTTGTGTGAAAAAAAAAAA
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