FC871150

Overview
NameFC871150
Unique NameFC871150
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length682
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5598 contig Csv1_Contig5598:115..796. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC871150 vs. ExPASy Swiss-Prot
Match: MIFH_TRISP (Macrophage migration inhibitory factor homolog OS=Trichinella spiralis PE=1 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 3.015e-18
Identity = 43/98 (43.88%), Postives = 62/98 (63.27%), Query Frame = 3
Query:   36 SSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKGSNFGWNGSTF 329
            S  LS  ++ V NI+ KP +YV + +     +SFGG+  PAA+G L+SIGG+ P  N+  SA +   L KKL +PK+R +I F +  G + GWNG+TF
Sbjct:   17 SDFLSSTSALVGNILSKPGSYVAVHINTDQQLSFGGSTKPAAFGTLMSIGGIEPSRNRDHSAKLFDHLNKKLGIPKNRMYIHFVNLNGDDVGWNGTTF 114          
BLAST of FC871150 vs. ExPASy Swiss-Prot
Match: MIFH_TRITR (Macrophage migration inhibitory factor homolog OS=Trichuris trichiura PE=1 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 3.334e-17
Identity = 42/109 (38.53%), Postives = 68/109 (62.39%), Query Frame = 3
Query:    3 STNV*LDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKGSNFGWNGSTF 329
            STNV  + +     L   +  +A ++GKPE+YV + + G   ++FGGT+ PA +G+L+S+GG+  + N+  SA +   L   L +P +R +I F D +GS+ G+NGSTF
Sbjct:    7 STNVPSENISVD-FLKSTSKLIAGMLGKPESYVAVHINGGQKITFGGTDAPAGFGQLLSLGGVGGEKNRSHSAKLFKHLTDGLGIPGNRMYINFVDMRGSDVGYNGSTF 114          
BLAST of FC871150 vs. ExPASy Swiss-Prot
Match: MIFH_BRUMA (Macrophage migration inhibitory factor homolog OS=Brugia malayi GN=BMBAC01P19.1 PE=3 SV=4)

HSP 1 Score: 84.7297 bits (208), Expect = 4.814e-16
Identity = 42/99 (42.42%), Postives = 63/99 (63.64%), Query Frame = 3
Query:   33 TSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKGSNFGWNGSTF 329
            +S+ L +A++ VA  +GKPE+YV I + G   M FGG+EDP A   L SIG + P VN   +  +  +L  +L +PK+R +I+F D + S+  +NGSTF
Sbjct:   16 SSAFLKKASNVVAKALGKPESYVSIHVNGGQAMVFGGSEDPCAVCVLKSIGCVGPKVNNSHAEKLYKLLADELKIPKNRCYIEFVDIEASSMAFNGSTF 114          
BLAST of FC871150 vs. ExPASy Swiss-Prot
Match: MIF_XENLA (Macrophage migration inhibitory factor OS=Xenopus laevis GN=mif PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.120e-15
Identity = 44/108 (40.74%), Postives = 61/108 (56.48%), Query Frame = 3
Query:    6 TNV*LDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKGSNFGWNGSTF 329
            TNV  D V   ++LS+ T  +A   GKP  Y+ I +     MSFG + DP A   L SIG +    NK  +  +  IL K+L++P +R +I +YD   +N GWNGSTF
Sbjct:    8 TNVCRDSVP-DTLLSDLTKQLAKATGKPAEYIAIHIVPDQIMSFGDSTDPCAVCSLCSIGKIGGPQNKSYTKLLCDILTKQLNIPANRVYINYYDLNAANVGWNGSTF 114          
BLAST of FC871150 vs. ExPASy Swiss-Prot
Match: MIFH_WUCBA (Macrophage migration inhibitory factor homolog OS=Wuchereria bancrofti GN=MIF PE=3 SV=3)

HSP 1 Score: 80.1073 bits (196), Expect = 1.186e-14
Identity = 40/99 (40.40%), Postives = 60/99 (60.61%), Query Frame = 3
Query:   33 TSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKGSNFGWNGSTF 329
            +S+ L +A + V   +GKPE+YV I + G  PM FGG+EDP     L SIG + P VN   +  +  +L  +L +PK+R +I+  D + S+  +NGSTF
Sbjct:   16 SSAFLKKAPNVVPKALGKPESYVSIHVNGGQPMVFGGSEDPCPVCVLKSIGCVGPKVNNSHAEKLYKLLADELKIPKNRCYIESVDIEASSMAFNGSTF 114          
BLAST of FC871150 vs. ExPASy Swiss-Prot
Match: MIF_XENTR (Macrophage migration inhibitory factor OS=Xenopus tropicalis GN=mif PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.506e-14
Identity = 42/108 (38.89%), Postives = 60/108 (55.56%), Query Frame = 3
Query:    6 TNV*LDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKGSNFGWNGSTF 329
            TNV  D +   ++LS+ T  +A   GKP  Y+ I +     MSFG + DP A   L SIG +    NK  S  +   L K++++P +R +I F+D   +N GWNGSTF
Sbjct:    8 TNVCRDSMP-DTLLSDLTKLLAKATGKPAEYIAIHIMPDQMMSFGDSTDPCAVCSLSSIGKIGGPQNKSYSKLLCDYLTKQMNIPANRVYINFHDLNPANVGWNGSTF 114          
BLAST of FC871150 vs. ExPASy Swiss-Prot
Match: MIF_CHICK (Macrophage migration inhibitory factor OS=Gallus gallus GN=MIF PE=3 SV=3)

HSP 1 Score: 77.411 bits (189), Expect = 7.686e-14
Identity = 42/108 (38.89%), Postives = 57/108 (52.78%), Query Frame = 3
Query:    6 TNV*LDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKGSNFGWNGSTF 329
            TNV  D V   S+L E T  +A   GKP  Y+ + +     MSFGG+ DP A   L SIG +    NK  +  +  ++ K L V   R +I ++D   +N GWNGSTF
Sbjct:    8 TNVCKDAVP-DSLLGELTQQLAKATGKPAQYIAVHIVPDQMMSFGGSTDPCALCSLYSIGKIGGQQNKTYTKLLCDMIAKHLHVSADRVYINYFDINAANVGWNGSTF 114          
BLAST of FC871150 vs. ExPASy Swiss-Prot
Match: MIF_RAT (Macrophage migration inhibitory factor OS=Rattus norvegicus GN=Mif PE=1 SV=4)

HSP 1 Score: 73.1738 bits (178), Expect = 1.450e-12
Identity = 36/95 (37.89%), Postives = 50/95 (52.63%), Query Frame = 3
Query:   45 LSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKGSNFGWNGSTF 329
            LSE T  +A   GKP  Y+ + +     M+F GT DP A   L SIG +    N+  S  +  +L  +L +   R +I +YD   +N GWNGSTF
Sbjct:   20 LSELTQQLAQATGKPAQYIAVHVVPDQLMTFSGTSDPCALCSLHSIGKIGGAQNRNYSKLLCGLLSDRLHISPDRVYINYYDMNAANVGWNGSTF 114          
BLAST of FC871150 vs. ExPASy Swiss-Prot
Match: MIF_MOUSE (Macrophage migration inhibitory factor OS=Mus musculus GN=Mif PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.450e-12
Identity = 36/95 (37.89%), Postives = 50/95 (52.63%), Query Frame = 3
Query:   45 LSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKGSNFGWNGSTF 329
            LSE T  +A   GKP  Y+ + +     M+F GT DP A   L SIG +    N+  S  +  +L  +L +   R +I +YD   +N GWNGSTF
Sbjct:   20 LSELTQQLAQATGKPAQYIAVHVVPDQLMTFSGTNDPCALCSLHSIGKIGGAQNRNYSKLLCGLLSDRLHISPDRVYINYYDMNAANVGWNGSTF 114          
BLAST of FC871150 vs. ExPASy Swiss-Prot
Match: MIF_PIG (Macrophage migration inhibitory factor OS=Sus scrofa GN=MIF PE=1 SV=3)

HSP 1 Score: 72.4034 bits (176), Expect = 2.472e-12
Identity = 34/95 (35.79%), Postives = 52/95 (54.74%), Query Frame = 3
Query:   45 LSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKGSNFGWNGSTF 329
            LSE T  +   +GKP  Y+ + +     M+FGG+ +P A   L SIG +    N+  S  +  +L ++L +   R +I +YD   +N GWNGSTF
Sbjct:   20 LSELTQQLVQAMGKPAQYIAVHVVPDQLMAFGGSSEPCALCSLHSIGKIGGAQNRSYSKLLCGLLAERLRISPDRIYINYYDMNAANVGWNGSTF 114          
The following BLAST results are available for this feature:
BLAST of FC871150 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
MIFH_TRISP3.015e-1843.88Macrophage migration inhibitory factor homolog OS=... [more]
MIFH_TRITR3.334e-1738.53Macrophage migration inhibitory factor homolog OS=... [more]
MIFH_BRUMA4.814e-1642.42Macrophage migration inhibitory factor homolog OS=... [more]
MIF_XENLA3.120e-1540.74Macrophage migration inhibitory factor OS=Xenopus ... [more]
MIFH_WUCBA1.186e-1440.40Macrophage migration inhibitory factor homolog OS=... [more]
MIF_XENTR4.506e-1438.89Macrophage migration inhibitory factor OS=Xenopus ... [more]
MIF_CHICK7.686e-1438.89Macrophage migration inhibitory factor OS=Gallus g... [more]
MIF_RAT1.450e-1237.89Macrophage migration inhibitory factor OS=Rattus n... [more]
MIF_MOUSE1.450e-1237.89Macrophage migration inhibitory factor OS=Mus musc... [more]
MIF_PIG2.472e-1235.79Macrophage migration inhibitory factor OS=Sus scro... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK3DA03FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK3DA03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871150 ID=FC871150; Name=FC871150; organism=Citrus sinensis; type=EST; length=682bp
TTTCAACTAACGTCTAACTCGATGGCGTTGACACGTCATCCATCCTCTCC
GAGGCCACCTCCACTGTCGCCAACATCATCGGCAAACCCGAGGCCTACGT
GATGATTGTGTTGAAGGGATCAGTACCTATGTCTTTTGGTGGAACTGAGG
ACCCGGCAGCTTATGGTGAGTTGGTGTCCATTGGTGGCCTTAACCCTGAT
GTGAACAAGAAGCTGAGTGCTGCAATTTCTGCAATTCTTGAAAAGAAGCT
GTCGGTACCCAAGTCACGATTCTTCATCAAGTTTTATGACACAAAGGGTT
CAAACTTTGGATGGAATGGATCCACCTTCTAGATATTATTCTCAAAGCAT
GGCGCCATGAACTCTGACAATTGTCTTATCTATATGGTGATTACAATCTT
TAGAACAATGTTAATAATTGGCTGAATATTGTGTAATTTCTCCTATGATG
TGTTTTCTTCTCGTTGGTGCTAGCCAACAATATTGTGGAATAGGAACTGT
TTGGTTTATGGAGTAATATTACATTTGTTAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCC
CCCTTTCTTTTTAAAAGTTTGGTAAAAAAAAA
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