FC871143

Overview
NameFC871143
Unique NameFC871143
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length688
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5600 contig Csv1_Contig5600:178..865. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC871143 vs. ExPASy Swiss-Prot
Match: BETL1_ARATH (Bet1-like protein At4g14600 OS=Arabidopsis thaliana GN=At4g14600 PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.023e-37
Identity = 75/111 (67.57%), Postives = 93/111 (83.78%), Query Frame = 1 
Query:    1 LTTRPVAGSDEIQLRIDPVNADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVKHGSNHIMHVVXXXXXXXXXXYMWSKMFRR 333
            L+TR  AGS+EIQLRIDP+++DLDDEITGL  QV+QL+N+AQEI SEA FQ+DFLD+LQMTLI+AQAGVKNN+R+LN SI++ G+NHIMHVV          Y+WSKMF+R
Sbjct:   27 LSTRNAAGSEEIQLRIDPMHSDLDDEITGLHGQVRQLKNIAQEIGSEAKFQRDFLDELQMTLIRAQAGVKNNIRKLNMSIIRSGNNHIMHVVLFALLVFFVLYIWSKMFKR 137
[Close]
BLAST of FC871143 vs. ExPASy Swiss-Prot
Match: BETL2_ARATH (Bet1-like protein At1g29060 OS=Arabidopsis thaliana GN=At1g29060 PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.299e-36
Identity = 73/111 (65.77%), Postives = 91/111 (81.98%), Query Frame = 1 
Query:    1 LTTRPVAGSDEIQLRIDPVNADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVKHGSNHIMHVVXXXXXXXXXXYMWSKMFRR 333
            L+TR  +GS+EIQLRIDP+++DLDDEI GL  QV+QL+N+AQEI SEA  Q+DFLD+LQMTLI+AQAGVKNN+R+LN SI++ G+NHIMHVV          YMWSKMF+R
Sbjct:   24 LSTRNASGSEEIQLRIDPMHSDLDDEILGLHGQVRQLKNIAQEIGSEAKSQRDFLDELQMTLIRAQAGVKNNIRKLNLSIIRSGNNHIMHVVLFALLLFFILYMWSKMFKR 134
The following BLAST results are available for this feature:
BLAST of FC871143 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
BETL1_ARATH1.023e-3767.57Bet1-like protein At4g14600 OS=Arabidopsis thalian... [more]
BETL2_ARATH4.299e-3665.77Bet1-like protein At1g29060 OS=Arabidopsis thalian... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAK2AC04FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK2AC04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871143 ID=FC871143; Name=FC871143; organism=Citrus sinensis; type=EST; length=688bp
CTCACCACTAGACCGGTCGCCGGTTCAGATGAAATACAGTTGCGGATCGA
TCCTGTGAATGCTGACCTGGACGATGAGATCACTGGTCTCCGTAGCCAAG
TTAAGCAGTTGAGAAATGTTGCTCAAGAGATACATTCAGAAGCATCATTT
CAGAAGGATTTTTTAGATCAATTGCAAATGACTCTGATCAAAGCTCAAGC
GGGTGTGAAGAACAACATGAGGAGATTAAACAAGAGCATTGTCAAACATG
GTTCTAACCATATAATGCATGTGGTTCTTTTTGCTCTATTTCTTTTCTTC
ATTCTCTACATGTGGTCCAAAATGTTCAGACGATGAAGTTAGAATGCCTG
GTGCGCACCATGCTAAGAATTCGATGACTGAAGGTGAAAGCTCCCTGGTT
CTGCACAAGGTTTCTAGACTGAAGTGCTAGCACTTCATTTCCTGATGATG
TTGCAAATGTAATGGCTTTCTGAAATTGTTTGTTTTAGGTCTTTCATGTA
TCATTACAAGTTAGCTTCTGTGTGAATGATGGGATATCAGTGGGTAAAAG
TATTCGCTAGGTTTCGAAGAATTATCTCTATAATAGAGAGAACTAAGTCT
TATTTCCATTTAAGCTTGTAAATTTTTGCACTTACCATCTTTGTGAAATG
GTTATTGAGTGAATTGAATGAAAAAAAAAAAAAAAAAA
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