EY730840

Overview
NameEY730840
Unique NameEY730840
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length483
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY730840 vs. ExPASy Swiss-Prot
Match: RH53_ARATH (DEAD-box ATP-dependent RNA helicase 53 OS=Arabidopsis thaliana GN=RH53 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 8.180e-22
Identity = 53/78 (67.95%), Postives = 62/78 (79.49%), Query Frame = 1
Query:  256 IPAVSLSSFSYF*ASIF--VS*EHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFN 483
            I   S+ + SY  ASI   +  EHAKGGKCIVFTQTKRDADRL++A+A+S+ CE LHGDISQSQRERTL+ FRDG FN
Sbjct:  323 ITTYSIIADSYGRASIIGPLVTEHAKGGKCIVFTQTKRDADRLSYALARSFKCEALHGDISQSQRERTLAGFRDGHFN 400          
BLAST of EY730840 vs. ExPASy Swiss-Prot
Match: RH53_ORYSJ (DEAD-box ATP-dependent RNA helicase 53 OS=Oryza sativa subsp. japonica GN=Os07g0143700 PE=2 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 3.108e-21
Identity = 46/56 (82.14%), Postives = 51/56 (91.07%), Query Frame = 1
Query:  316 EHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFN 483
            EHA GGKCIVFTQTKR+ADRLA+AM +SY C+ LHGDISQ+QRERTLS FRDGRFN
Sbjct:  324 EHANGGKCIVFTQTKREADRLAYAMGRSYACQALHGDISQNQRERTLSGFRDGRFN 379          
BLAST of EY730840 vs. ExPASy Swiss-Prot
Match: RH9_ARATH (DEAD-box ATP-dependent RNA helicase 9 OS=Arabidopsis thaliana GN=RH9 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 5.302e-21
Identity = 52/78 (66.67%), Postives = 60/78 (76.92%), Query Frame = 1
Query:  256 IPAVSLSSFSYF*ASIF--VS*EHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFN 483
            I   S+++ SY  ASI   +  EH KGGKCIVFTQTKRDADRLA  +AKSY CE LHGDISQ+QRERTL+ FRDG F+
Sbjct:  335 ITMYSIAADSYGRASIIGPLVKEHGKGGKCIVFTQTKRDADRLAFGLAKSYKCEALHGDISQAQRERTLAGFRDGNFS 412          
BLAST of EY730840 vs. ExPASy Swiss-Prot
Match: RH9_ORYSJ (DEAD-box ATP-dependent RNA helicase 9 OS=Oryza sativa subsp. japonica GN=Os12g0611200 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.228e-19
Identity = 41/56 (73.21%), Postives = 49/56 (87.50%), Query Frame = 1
Query:  316 EHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFN 483
            EHAKGGKCIVFTQTKRDADRL++ M +S+ C+ LHGDI+Q+QRERTL  FR+G FN
Sbjct:  338 EHAKGGKCIVFTQTKRDADRLSYTMGRSFQCQALHGDITQAQRERTLKGFREGHFN 393          
BLAST of EY730840 vs. ExPASy Swiss-Prot
Match: RH3_ARATH (DEAD-box ATP-dependent RNA helicase 3 OS=Arabidopsis thaliana GN=RH3 PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 6.278e-14
Identity = 37/54 (68.52%), Postives = 44/54 (81.48%), Query Frame = 1
Query:  319 HAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRF 480
            +AKGGK IVFTQTKRDAD ++ A++ S   E LHGDISQ QRERTL+AFR G+F
Sbjct:  348 YAKGGKTIVFTQTKRDADEVSLALSNSIATEALHGDISQHQRERTLNAFRQGKF 401          
BLAST of EY730840 vs. ExPASy Swiss-Prot
Match: RH3_ORYSJ (DEAD-box ATP-dependent RNA helicase 3 OS=Oryza sativa subsp. japonica GN=Os03g0827700 PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 6.941e-13
Identity = 35/54 (64.81%), Postives = 42/54 (77.78%), Query Frame = 1
Query:  319 HAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRF 480
            +AKGGK IVFT+TKRDAD ++ A+  S   E LHGDISQ QRERTL+ FR G+F
Sbjct:  348 YAKGGKTIVFTKTKRDADEVSLALTNSIASEALHGDISQHQRERTLNGFRQGKF 401          
The following BLAST results are available for this feature:
BLAST of EY730840 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
RH53_ARATH8.180e-2267.95DEAD-box ATP-dependent RNA helicase 53 OS=Arabidop... [more]
RH53_ORYSJ3.108e-2182.14DEAD-box ATP-dependent RNA helicase 53 OS=Oryza sa... [more]
RH9_ARATH5.302e-2166.67DEAD-box ATP-dependent RNA helicase 9 OS=Arabidops... [more]
RH9_ORYSJ2.228e-1973.21DEAD-box ATP-dependent RNA helicase 9 OS=Oryza sat... [more]
RH3_ARATH6.278e-1468.52DEAD-box ATP-dependent RNA helicase 3 OS=Arabidops... [more]
RH3_ORYSJ6.941e-1364.81DEAD-box ATP-dependent RNA helicase 3 OS=Oryza sat... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-704-035-D11-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY730840 ID=EY730840; Name=EY730840; organism=Citrus sinensis; type=EST; length=483bp
CCACGCGTCCGCCCACGCGTCCGCCTTGTTGGAGATTCTGATCAAAAGCT
AGCTGATGGAATTTCCCTCTATTCCATTGCAACAAGCATGTATGAAAAAC
CATCAATTATTGGTCAGCTTATAACAGTATGATCCAGAACTTTGTTTCTC
TCTTTACAGTTTCTGTTTGATTGCTAAATGTAATTACCTTGTAGTGTGTT
TATGAATCTTCTGCGTTCTTTTATCTTGTAGACAAATGCTAGAGAAATTA
TGACTATTCCCGCTGTATCTTTGTCATCCTTTTCCTATTTCTGAGCATCA
ATTTTTGTGTCTTAGGAACATGCAAAAGGTGGAAAATGCATTGTTTTCAC
TCAAACAAAACGTGATGCAGACCGCTTGGCTCATGCTATGGCTAAAAGTT
ATAATTGTGAGCCTTTGCATGGGGATATCTCACAAAGCCAGAGGGAGAGG
ACCCTTTCAGCTTTCCGAGATGGACGTTTCAAT
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