EY730828

Overview
NameEY730828
Unique NameEY730828
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length579
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY730828 vs. ExPASy Swiss-Prot
Match: BUGT_BORPE (Protein bugT OS=Bordetella pertussis GN=bugT PE=3 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 1.170e-19
Identity = 54/133 (40.60%), Postives = 68/133 (51.13%), Query Frame = 1
Query:   79 HLAGVMFDQLTGAGMQHIPYKGSAQALNDLLGGHLPIMFDNLPASLPHIKSGKVHALAVTGSKRAPALPDVPTLAELGYGGAVVDPWFAVYGPAKLPPEITXXXXXXXXXXXXMPDVKDKLEQAGFMPYGSTP 477
            HL   +F   TGA +  IPYKGS  A+ DLLGG +    +N+PA L HI+SG + ALA+  S R+   P VPT+AELGY   V  PWFAV  P    P+I                V +     G  P  +TP
Sbjct:  168 HLLTELFQLRTGAAINMIPYKGSGPAVVDLLGGVVAADIENMPAVLEHIRSGNLRALAILSSDRSTHFPAVPTMAELGYPEFVASPWFAVMAPKGTDPKIIVLLNRHINEALQSKAVVEAFAAQGATPVIATP 300          
BLAST of EY730828 vs. ExPASy Swiss-Prot
Match: YTCB_PSESQ (UPF0065 protein in tcbD-tcbE intergenic region OS=Pseudomonas sp. (strain P51) PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 6.420e-18
Identity = 51/162 (31.48%), Postives = 83/162 (51.23%), Query Frame = 1
Query:   73 SMHLAGVMFDQLTGAGMQHIPYKGSAQALNDLLGGHLPIMFDNLPASLPHIKSGKVHALAVTGSKRAPALPDVPTLAE-LGYGGAVVDPWFAVYGPAKLPPEITXXXXXXXXXXXXMPDVKDKLEQAGFMPYGSTPAEVERLTRSQYESFKALSQKVKLSAD 555
            S+HLA  +        + H+PY+GS+ A++DL+ G + +M D++ +   +I + +V AL VT   R P LP+VPT+AE  G  G  V  W  V+ P   P  +              PDV + L+Q G    G  P  +  L +S+ E ++ L  + +L+A+
Sbjct:  174 SIHLASALLAARANVELLHVPYRGSSPAVSDLVAGRVDMMIDSVTSQRQNILAKRVRALGVTSLDRHPQLPEVPTIAEAAGLPGFEVLTWCGVFAPKGTPRSVVERLNAEINKAIAAPDVVEALKQLGIKTAGGAPEVLADLFKSETERWQKLIVEYRLNAN 335          
BLAST of EY730828 vs. ExPASy Swiss-Prot
Match: YCLC_PSEPU (UPF0065 protein in clcB-clcD intergenic region OS=Pseudomonas putida PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.581e-16
Identity = 52/158 (32.91%), Postives = 75/158 (47.47%), Query Frame = 1
Query:    7 KDLVAYAKQHXXXXXXXXXXXX-SMHLAGVMFDQLTGAGMQHIPYKGSAQALNDLLGGHLPIMFDNLPASLPHIKSGKVHALAVTGSKRAPALPDVPTLAELG-YGGAVVDPWFAVYGPAKLPPEITXXXXXXXXXXXXMPDVKDKLEQAGFMPYGST 474
            + L+AYAK +             S+HLA  +     G  + H+PYKGS  A  DL+ G L +M D++ A    IKSG+V AL VT  + AP+LP +P LA+        V  WF ++ P++  P+I              P+V+  L   G    G T
Sbjct:  143 RSLLAYAKANPGKVSFASAGMGTSIHLAAALLAAQAGVDLLHVPYKGSTPAAADLIAGRLSMMVDSITAQQSFIKSGRVRALGVTSLQPAPSLPGIPPLAQAADQPNFEVLTWFGLFVPSRTSPDIVKVLNTAMNEALKTPEVQKALADIGASAQGGT 300          
BLAST of EY730828 vs. ExPASy Swiss-Prot
Match: YCLC_PSESB (UPF0065 protein in clcB-clcD intergenic region (Fragment) OS=Pseudomonas sp. (strain B13) PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.523e-16
Identity = 47/135 (34.81%), Postives = 67/135 (49.63%), Query Frame = 1
Query:   73 SMHLAGVMFDQLTGAGMQHIPYKGSAQALNDLLGGHLPIMFDNLPASLPHIKSGKVHALAVTGSKRAPALPDVPTLAELG-YGGAVVDPWFAVYGPAKLPPEITXXXXXXXXXXXXMPDVKDKLEQAGFMPYGST 474
            S+HLA  +     G  + H+PYKGS  A  DL+ G L +M D++ A    IKSG+V AL VT  + AP+LP +P LA+        V  WF ++ P++  P+I              P+V+  L   G    G T
Sbjct:    6 SIHLAAALLAAQAGVDLLHVPYKGSTPAAADLIAGRLSMMVDSITAQQSFIKSGRVRALGVTSLQPAPSLPGIPPLAQAADQPNFEVLTWFGLFVPSRTSPDIVKVLNTAMNEALKTPEVQKALADIGASAQGGT 140          
BLAST of EY730828 vs. ExPASy Swiss-Prot
Match: YGB7_RALEU (UPF0065 protein in gbd 5'region OS=Ralstonia eutropha PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.283e-15
Identity = 51/184 (27.72%), Postives = 85/184 (46.20%), Query Frame = 1
Query:    1 SVKDLVAYAKQHXXXXXXXXXXXXS-MHLAGVMFDQLTGAGMQHIPYKGSAQALNDLLGGHLPIMFDNLPASLPHIKSGKVHALAVTGSKRAPALPDVPTLAELGYGGAVVDPWFAVYGPAKLPPEITXXXXXXXXXXXXMPDVKDKLEQAGFMPYGSTPAEVERLTRSQYESFKALSQKVKLS 549
            ++++ +AYAK +            + +HL         G    HIPYKG+++++  LLGGH+  + D  PA  P+++ GK+  L+  G KR+   P VPTL ELG G     P F +  P    P+I             MP+ ++ L +    PY     +  +      +  KA+ +K+ L+
Sbjct:  143 TMQEYIAYAKANPGKLTYGSPGSMTTLHLTMEELAMKQGVQFSHIPYKGNSESMQALLGGHVMSVADT-PAWAPYVEQGKLRLLSTWGEKRSARFPSVPTLKELGIGIVQTSP-FGLVAPKGTDPKIVQKLHDAFKKAMDMPNYRESLAKFDMEPYYMNSQQYAQFAAETVKKEKAIIEKLGLA 324          
BLAST of EY730828 vs. ExPASy Swiss-Prot
Match: YTUY_AGRVI (UPF0065 protein in the TAR-I ttuE-ttuC' intergenic region OS=Agrobacterium vitis PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.218e-13
Identity = 51/183 (27.87%), Postives = 81/183 (44.26%), Query Frame = 1
Query:   10 DLVAYAKQHXXXXXXXXXXXXSMH-LAGVMFDQLTGAGMQHIPYKGSAQALNDLLGGHLPIMFDNLPASLPHIKSGKVHALAVTGSKRAPALPDVPTLAELGYGGAVVDPWFAVYGPAKLPPEITXXXXXXXXXXXXMPDVKDKLEQAGFMPYG---STPAEVERLTRSQYESF-KALSQKVK 543
            DLVA  K++            ++  L G +     G  +  +PYKG   A+ DL+GG + +  D    +   IK+ +VHA AVT   R   LPDVPT+ E G     +  W A++ P   P  I              P V ++    G +P     +TPA +++  +++ E   K +S+  K
Sbjct:  164 DLVAIVKKNATTVTFGTAGTGAVSDLCGRLLQDALGTKITLVPYKGMGPAMTDLIGGRIDLACDQTTNTTTQIKANEVHAYAVTTKARIDVLPDVPTVDEGGLKDFELSAWHALWAPKDTPAPIREKLSEALKTALKDPMVIERFASLGTVPVAQDMATPAALDQKFKAEVERLAKVISEAGK 346          
BLAST of EY730828 vs. ExPASy Swiss-Prot
Match: Y4329_BORBR (UPF0065 protein BB4329 OS=Bordetella bronchiseptica GN=BB4329 PE=3 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 2.612e-11
Identity = 52/187 (27.81%), Postives = 78/187 (41.71%), Query Frame = 1
Query:    1 SVKDLVAYAKQHXXXXXXXXXXXXSMHLAGVMFDQLTGAGMQHIPYKGSAQALNDLLGGHLPIMFDNLPASLPHIKSGKVHALAVTGSKRAPALPDVPTLAELGYGGAVVDPWFAVYGPAKLPPEITXXXXXXXXXXXXMPDVKDKLEQAGFMPYGSTPAEVER-----LTRSQYESFKALSQKVKL 546
            ++++LVA AK              S  L G   +Q  G  + +I Y  S  A  D++GG +PI+ D L    PH KSG++  LAV+ + R    PDVP+++E    G        V  PA  P E+              P +  +     F+P G   A+  R     + R Q   F+ L Q   +
Sbjct:  154 NIQELVAGAKTDEVFFATPGAASLS-RLIGESINQKAGTRLVNIAYPSSPPAHTDIIGGQVPILIDGLGGIAPHAKSGRMRLLAVSTASRFAGFPDVPSISE-AVPGLATPSMNIVMAPAGTPAEVLDLLNRHINEITADPAIASR-----FIPMGGESAQGSRQDTAAMLREQRVEFRKLMQTANI 333          
The following BLAST results are available for this feature:
BLAST of EY730828 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
BUGT_BORPE1.170e-1940.60Protein bugT OS=Bordetella pertussis GN=bugT PE=3 ... [more]
YTCB_PSESQ6.420e-1831.48UPF0065 protein in tcbD-tcbE intergenic region OS=... [more]
YCLC_PSEPU1.581e-1632.91UPF0065 protein in clcB-clcD intergenic region OS=... [more]
YCLC_PSESB3.523e-1634.81UPF0065 protein in clcB-clcD intergenic region (Fr... [more]
YGB7_RALEU2.283e-1527.72UPF0065 protein in gbd 5'region OS=Ralstonia eutro... [more]
YTUY_AGRVI6.218e-1327.87UPF0065 protein in the TAR-I ttuE-ttuC' intergenic... [more]
Y4329_BORBR2.612e-1127.81UPF0065 protein BB4329 OS=Bordetella bronchiseptic... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-704-035-C09-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY730828 ID=EY730828; Name=EY730828; organism=Citrus sinensis; type=EST; length=579bp
AGCGTCAAGGACCTGGTGGCCTATGCCAAGCAGCACGCCGGCACCGCCTT
CGGCACGCCCGGCACCGGCACCTCGATGCACCTGGCTGGCGTCATGTTCG
ACCAGCTCACCGGCGCCGGCATGCAGCACATCCCCTACAAGGGCAGCGCG
CAGGCGCTGAACGACCTGCTGGGCGGCCACCTACCGATCATGTTCGACAA
CCTGCCGGCCTCGCTGCCGCACATCAAGTCGGGCAAGGTCCATGCGCTGG
CGGTCACCGGCAGCAAGCGCGCGCCGGCCTTGCCGGACGTGCCGACGCTG
GCCGAGCTCGGCTATGGCGGGGCGGTGGTGGATCCGTGGTTCGCGGTCTA
TGGCCCGGCCAAGCTGCCGCCGGAAATCACGGCCGCGCTGAGCGAAGCCT
TCCAGGCGGCGCTGGCGATGCCGGACGTCAAGGACAAGCTGGAGCAGGCC
GGTTTCATGCCCTATGGCTCGACGCCCGCCGAAGTCGAGCGCCTGACCCG
CAGCCAGTACGAGTCGTTCAAGGCGCTGTCGCAGAAGGTCAAGCTGTCGG
CCGACTGAGCGCCGCGCGGTCCGTGGATC
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