CN191220

Overview
NameCN191220
Unique NameCN191220
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length695
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN191220 vs. ExPASy Swiss-Prot
Match: GLYC2_DICDI (Serine hydroxymethyltransferase 2 OS=Dictyostelium discoideum GN=shmt2 PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.230e-38
Identity = 69/133 (51.88%), Postives = 104/133 (78.20%), Query Frame = -3
Query:  289 LTGKGYSLVTGGIENHLVFWDIRPLGLTGNKVEKLCDLCNIIVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEALKADVEKFASSFDMPG 687
            L  +GYSLVT G +NHLV WD+RP G+TG+K+EK CD  +I VNKNAV+GD++A+APGGVR+G PA+TSRGL E+DF ++ +F  R V ++L+IQ + GK + DF + + +N+D++ ++ +V++F++ F MPG
Sbjct:  347 LKKRGYSLVTEGTDNHLVLWDLRPQGITGSKIEKACDEAHITVNKNAVYGDTNAIAPGGVRLGAPALTSRGLKEQDFVKVVDFLDRVVKISLDIQSKVGKKMPDFQRAIADNQDLKQIRQEVKEFSTKFGMPG 479          
BLAST of CN191220 vs. ExPASy Swiss-Prot
Match: GLYC1_DICDI (Serine hydroxymethyltransferase 1 OS=Dictyostelium discoideum GN=shmt1 PE=1 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.151e-36
Identity = 73/135 (54.07%), Postives = 98/135 (72.59%), Query Frame = -3
Query:  289 NYLTGKGYSLVTGGIENHLVFWDIRPLGLTGNKVEKLCDLCNIIVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEALKADVEKFASSFDMPG 693
            N L  KGY LVT G +NHL+ WD+RP  LTGNK EK  D+ NI VNKNAV GD++A++PGG+RIG+ A+TSRGL E DFE+I +F  R V+++LEIQ   GK L DF   +  +K++  L+ +VE+F+S F +PG
Sbjct:  322 NALMNKGYKLVTNGTDNHLILWDLRPKELTGNKFEKAADIANITVNKNAVHGDTNAISPGGIRIGSSALTSRGLKEADFEKIADFLDRIVSISLEIQGRVGKKLVDFVVEINKSKELLDLRKEVEEFSSKFTLPG 456          
BLAST of CN191220 vs. ExPASy Swiss-Prot
Match: GLYC_HUMAN (Serine hydroxymethyltransferase, cytosolic OS=Homo sapiens GN=SHMT1 PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.456e-31
Identity = 68/138 (49.28%), Postives = 93/138 (67.39%), Query Frame = -3
Query:  289 LTGKGYSLVTGGIENHLVFWDIRPLGLTGNKVEKLCDLCNIIVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVTLTLEIQKEYG--KLLKDFNKGLVNNK---DIEALKADVEKFASSFDMPG 687
            LT  GY +VTGG +NHL+  D+R  G  G + EK+ + C+I  NKN   GD SAL P G+R+GTPA+TSRGLLEKDF+++  F HR + LTL+IQ + G    LK+F + L  +K    ++AL+ +VE FAS F +PG
Sbjct:  342 LTELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDRSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTLQIQSDTGVRATLKEFKERLAGDKYQAAVQALREEVESFASLFPLPG 479          
BLAST of CN191220 vs. ExPASy Swiss-Prot
Match: GLYC_PONAB (Serine hydroxymethyltransferase, cytosolic OS=Pongo abelii GN=SHMT1 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.243e-31
Identity = 68/138 (49.28%), Postives = 92/138 (66.67%), Query Frame = -3
Query:  289 LTGKGYSLVTGGIENHLVFWDIRPLGLTGNKVEKLCDLCNIIVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVTLTLEIQKEYG--KLLKDFNKGLVNNK---DIEALKADVEKFASSFDMPG 687
            LT  GY +VTGG +NHL+  D+R  G  G + EK+ + C+I  NKN   GD SAL P G+R+GTPA+TSRGLLEKDF+++  F HR + LTL+IQ + G    LK+F + L  +K    ++AL+  VE FAS F +PG
Sbjct:  342 LTELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDRSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTLQIQSDTGVRATLKEFKERLAGDKYQGAVQALREKVESFASLFPLPG 479          
BLAST of CN191220 vs. ExPASy Swiss-Prot
Match: GLYM_PEA (Serine hydroxymethyltransferase, mitochondrial OS=Pisum sativum PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.532e-31
Identity = 70/146 (47.95%), Postives = 100/146 (68.49%), Query Frame = -3
Query:  265 LTGKGYSLVTGGIENHLVFWDIRPLGLTGNKVEKLCDLCNIIVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVTLTLEIQKE-YGKLLKDFNKGLVNN----KDIEALKADVEKFASSFDMPGFKMSEMKY 687
            L+ KGY LV+GG ENHLV  +++  G+ G++VEK+ +L +I  NKN V GD SA+ PGG+R+GTPA+TSRG +E+DF ++ E+F  AV+L L+++ E  G  LKDF + L  +     +I  LK DVE+FA  F   GF+ + MKY
Sbjct:  371 LSEKGYDLVSGGTENHLVLVNLKNKGIDGSRVEKVLELVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFVKVAEYFDAAVSLALKVKAESKGTKLKDFVEALQTSSYVQSEISKLKHDVEEFAKQFPTIGFEKATMKY 516          
BLAST of CN191220 vs. ExPASy Swiss-Prot
Match: GLYM_ARATH (Serine hydroxymethyltransferase, mitochondrial OS=Arabidopsis thaliana GN=SHM1 PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.226e-31
Identity = 66/148 (44.59%), Postives = 102/148 (68.92%), Query Frame = -3
Query:  259 LTGKGYSLVTGGIENHLVFWDIRPLGLTGNKVEKLCDLCNIIVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVTLTLEIQKE-YGKLLKDFNKGLVNNKDIEA----LKADVEKFASSFDMPGFKMSEMKYKD 687
            L  +GY LV+GG +NHLV  +++P G+ G++VEK+ +  +I  NKN V GD SA+ PGG+R+GTPA+TSRG +E+DF ++ E+F +AVT+ L+++ E  G  LKDF   + ++  I++    L+ +VE+FA  F   GF+   MKYK+
Sbjct:  370 LMERGYELVSGGTDNHLVLVNLKPKGIDGSRVEKVLEAVHIASNKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAEYFDKAVTIALKVKSEAQGTKLKDFVSAMESSSTIQSEIAKLRHEVEEFAKQFPTIGFEKETMKYKN 517          
BLAST of CN191220 vs. ExPASy Swiss-Prot
Match: GLYC_MOUSE (Serine hydroxymethyltransferase, cytosolic OS=Mus musculus GN=Shmt1 PE=1 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 2.102e-30
Identity = 65/139 (46.76%), Postives = 92/139 (66.19%), Query Frame = -3
Query:  289 LTGKGYSLVTGGIENHLVFWDIRPLGLTGNKVEKLCDLCNIIVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVTLTLEIQKEYG--KLLKDFNKGLVNNKDIEA----LKADVEKFASSFDMPG 687
            LT  GY +VTGG +NHL+  D+R  G  G + EK+ + C+I  NKN   GD SAL P G+R+GTPA+TSRGLLE+DF+++  F HR + LTL+IQ        LK+F + L  ++ I++    L+ +VE FAS+F +PG
Sbjct:  336 LTELGYKIVTGGSDNHLILMDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEEDFQKVAHFIHRGIELTLQIQSHMATKATLKEFKEKLAGDEKIQSAVATLREEVENFASNFSLPG 474          
BLAST of CN191220 vs. ExPASy Swiss-Prot
Match: GLYC_BOVIN (Serine hydroxymethyltransferase, cytosolic OS=Bos taurus GN=SHMT1 PE=2 SV=3)

HSP 1 Score: 131.724 bits (330), Expect = 3.586e-30
Identity = 66/139 (47.48%), Postives = 93/139 (66.91%), Query Frame = -3
Query:  289 LTGKGYSLVTGGIENHLVFWDIRPLGLTGNKVEKLCDLCNIIVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVTLTLEIQKEYG--KLLKDFNKGLV----NNKDIEALKADVEKFASSFDMPG 687
            L G GY +VTGG +NHL+  D+R  G  G + EK+ + C+I  NKN   GD SAL P G+R+GTPA+TSRGLLE+DF+++  F HR + LTL+IQ   G    LK+F + L     +++ + AL+A+VE FA+ F +PG
Sbjct:  342 LMGLGYRVVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEEDFQKVAHFIHRGIELTLQIQDAVGVKATLKEFMEKLAGAEEHHRAVAALRAEVESFATLFPLPG 480          
BLAST of CN191220 vs. ExPASy Swiss-Prot
Match: GLYC_CAEEL (Serine hydroxymethyltransferase OS=Caenorhabditis elegans GN=mel-32 PE=1 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 6.117e-30
Identity = 63/133 (47.37%), Postives = 87/133 (65.41%), Query Frame = -3
Query:  289 GYSLVTGGIENHLVFWDIRPLGLTGNKVEKLCDLCNIIVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVTLTLEIQKEYGKLLKDFNKGLVNN----KDIEALKADVEKFASSFDMPG 675
            GY+L TGG +NHL+  D+RP+G+ G + E + DL +I  NKN   GD SAL PGG+R+GTPA+TSRG  E+DFE++G+F H  V +  +   E GK LKDF      N    KD+  L   VE+F++ F++PG
Sbjct:  371 GYALATGGTDNHLLLVDLRPIGVEGARAEHVLDLAHIACNKNTCPGDVSALRPGGIRLGTPALTSRGFQEQDFEKVGDFIHEGVQIAKKYNAEAGKTLKDFKSFTETNEPFKKDVADLAKRVEEFSTKFEIPG 503          
BLAST of CN191220 vs. ExPASy Swiss-Prot
Match: GLYC_SHEEP (Serine hydroxymethyltransferase, cytosolic OS=Ovis aries GN=SHMT1 PE=1 SV=3)

HSP 1 Score: 130.568 bits (327), Expect = 7.989e-30
Identity = 66/139 (47.48%), Postives = 91/139 (65.47%), Query Frame = -3
Query:  289 LTGKGYSLVTGGIENHLVFWDIRPLGLTGNKVEKLCDLCNIIVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVTLTLEIQKEYG--KLLKDFNKGLV----NNKDIEALKADVEKFASSFDMPG 687
            L G GY +VTGG +NHL+  D+R  G  G + EK+ + C+I  NKN   GD SAL P G+R+GTPA+TSRGLLE+DF ++  F HR + LTL+IQ   G    LK+F + L     + + + AL+A+VE FA+ F +PG
Sbjct:  342 LMGLGYRVVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEEDFRKVAHFIHRGIELTLQIQDAVGVKATLKEFMEKLAGAEEHQRAVTALRAEVESFATLFPLPG 480          
The following BLAST results are available for this feature:
BLAST of CN191220 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 268
Match NameE-valueIdentityDescription
GLYC2_DICDI1.230e-3851.88Serine hydroxymethyltransferase 2 OS=Dictyostelium... [more]
GLYC1_DICDI1.151e-3654.07Serine hydroxymethyltransferase 1 OS=Dictyostelium... [more]
GLYC_HUMAN1.456e-3149.28Serine hydroxymethyltransferase, cytosolic OS=Homo... [more]
GLYC_PONAB3.243e-3149.28Serine hydroxymethyltransferase, cytosolic OS=Pong... [more]
GLYM_PEA5.532e-3147.95Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_ARATH7.226e-3144.59Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYC_MOUSE2.102e-3046.76Serine hydroxymethyltransferase, cytosolic OS=Mus ... [more]
GLYC_BOVIN3.586e-3047.48Serine hydroxymethyltransferase, cytosolic OS=Bos ... [more]
GLYC_CAEEL6.117e-3047.37Serine hydroxymethyltransferase OS=Caenorhabditis ... [more]
GLYC_SHEEP7.989e-3047.48Serine hydroxymethyltransferase, cytosolic OS=Ovis... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0004M14_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0004M14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN191220 ID=CN191220; Name=CN191220; organism=Citrus sinensis; type=EST; length=695bp
TTTTTTTTTTTTTTTTTACATAAATTTGTTGTTTTATTTGTAGATGAACA
ATCATCATTTGACCAAAGAGAAACGGATCTCACTTTCACAATATGGTGGG
TACCAATTAAAAAAAAAAAAAAAGTTAAAACGAAAGCGTTTAAACCTAGG
ACAACAAAAGGCAAAGATGCATGCAATTTTTTTTCTTCTCTTTCTGTTTT
TCAACACTAAAGAGTTGCTAACAACACAGTAACAATAATGATGATACTTT
GAGACCTAATCCTTGTACTTCATCTCGGACATTTTAAAGCCGGGCATGTC
AAATGAGCTGGCGAACTTCTCAACATCAGCCTTGAGGGCCTCGATGTCCT
TGTTGTTCACCAAACCCTTGTTGAAGTCCTTCAAGAGCTTTCCATACTCC
TTTTGAATTTCCAACGTGAGGGTCACAGCGCGGTGAAAAAACTCTCCAAT
TTGCTCGAAGTCCTTCTCCAACAAACCTCTGGAAGTCATGGCAGGAGTAC
CGATTCTTACTCCTCCAGGGGCCAAGGCACTGCTGTCACCAAACACAGCA
TTCTTGTTCACAATAATGTTGCAAAGGTCACAAAGCTTCTCAACCTTATT
GCCAGTCAATCCAAGAGGGCGTATATCCCAGAAAACAAGGTGGTTCTCAA
TTCCACCAGTGACAAGGCTGTATCCCTTGCCCGTCAGGTAGTTCC
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