CN191220
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN191220 vs. ExPASy Swiss-Prot
Match: GLYC2_DICDI (Serine hydroxymethyltransferase 2 OS=Dictyostelium discoideum GN=shmt2 PE=3 SV=1) HSP 1 Score: 159.844 bits (403), Expect = 1.230e-38 Identity = 69/133 (51.88%), Postives = 104/133 (78.20%), Query Frame = -3 Query: 289 LTGKGYSLVTGGIENHLVFWDIRPLGLTGNKVEKLCDLCNIIVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEALKADVEKFASSFDMPG 687 L +GYSLVT G +NHLV WD+RP G+TG+K+EK CD +I VNKNAV+GD++A+APGGVR+G PA+TSRGL E+DF ++ +F R V ++L+IQ + GK + DF + + +N+D++ ++ +V++F++ F MPG Sbjct: 347 LKKRGYSLVTEGTDNHLVLWDLRPQGITGSKIEKACDEAHITVNKNAVYGDTNAIAPGGVRLGAPALTSRGLKEQDFVKVVDFLDRVVKISLDIQSKVGKKMPDFQRAIADNQDLKQIRQEVKEFSTKFGMPG 479
BLAST of CN191220 vs. ExPASy Swiss-Prot
Match: GLYC1_DICDI (Serine hydroxymethyltransferase 1 OS=Dictyostelium discoideum GN=shmt1 PE=1 SV=1) HSP 1 Score: 153.295 bits (386), Expect = 1.151e-36 Identity = 73/135 (54.07%), Postives = 98/135 (72.59%), Query Frame = -3 Query: 289 NYLTGKGYSLVTGGIENHLVFWDIRPLGLTGNKVEKLCDLCNIIVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEALKADVEKFASSFDMPG 693 N L KGY LVT G +NHL+ WD+RP LTGNK EK D+ NI VNKNAV GD++A++PGG+RIG+ A+TSRGL E DFE+I +F R V+++LEIQ GK L DF + +K++ L+ +VE+F+S F +PG Sbjct: 322 NALMNKGYKLVTNGTDNHLILWDLRPKELTGNKFEKAADIANITVNKNAVHGDTNAISPGGIRIGSSALTSRGLKEADFEKIADFLDRIVSISLEIQGRVGKKLVDFVVEINKSKELLDLRKEVEEFSSKFTLPG 456
BLAST of CN191220 vs. ExPASy Swiss-Prot
Match: GLYC_HUMAN (Serine hydroxymethyltransferase, cytosolic OS=Homo sapiens GN=SHMT1 PE=1 SV=1) HSP 1 Score: 136.346 bits (342), Expect = 1.456e-31 Identity = 68/138 (49.28%), Postives = 93/138 (67.39%), Query Frame = -3 Query: 289 LTGKGYSLVTGGIENHLVFWDIRPLGLTGNKVEKLCDLCNIIVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVTLTLEIQKEYG--KLLKDFNKGLVNNK---DIEALKADVEKFASSFDMPG 687 LT GY +VTGG +NHL+ D+R G G + EK+ + C+I NKN GD SAL P G+R+GTPA+TSRGLLEKDF+++ F HR + LTL+IQ + G LK+F + L +K ++AL+ +VE FAS F +PG Sbjct: 342 LTELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDRSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTLQIQSDTGVRATLKEFKERLAGDKYQAAVQALREEVESFASLFPLPG 479
BLAST of CN191220 vs. ExPASy Swiss-Prot
Match: GLYC_PONAB (Serine hydroxymethyltransferase, cytosolic OS=Pongo abelii GN=SHMT1 PE=2 SV=1) HSP 1 Score: 135.191 bits (339), Expect = 3.243e-31 Identity = 68/138 (49.28%), Postives = 92/138 (66.67%), Query Frame = -3 Query: 289 LTGKGYSLVTGGIENHLVFWDIRPLGLTGNKVEKLCDLCNIIVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVTLTLEIQKEYG--KLLKDFNKGLVNNK---DIEALKADVEKFASSFDMPG 687 LT GY +VTGG +NHL+ D+R G G + EK+ + C+I NKN GD SAL P G+R+GTPA+TSRGLLEKDF+++ F HR + LTL+IQ + G LK+F + L +K ++AL+ VE FAS F +PG Sbjct: 342 LTELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDRSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTLQIQSDTGVRATLKEFKERLAGDKYQGAVQALREKVESFASLFPLPG 479
BLAST of CN191220 vs. ExPASy Swiss-Prot
Match: GLYM_PEA (Serine hydroxymethyltransferase, mitochondrial OS=Pisum sativum PE=1 SV=1) HSP 1 Score: 134.42 bits (337), Expect = 5.532e-31 Identity = 70/146 (47.95%), Postives = 100/146 (68.49%), Query Frame = -3 Query: 265 LTGKGYSLVTGGIENHLVFWDIRPLGLTGNKVEKLCDLCNIIVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVTLTLEIQKE-YGKLLKDFNKGLVNN----KDIEALKADVEKFASSFDMPGFKMSEMKY 687 L+ KGY LV+GG ENHLV +++ G+ G++VEK+ +L +I NKN V GD SA+ PGG+R+GTPA+TSRG +E+DF ++ E+F AV+L L+++ E G LKDF + L + +I LK DVE+FA F GF+ + MKY Sbjct: 371 LSEKGYDLVSGGTENHLVLVNLKNKGIDGSRVEKVLELVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFVKVAEYFDAAVSLALKVKAESKGTKLKDFVEALQTSSYVQSEISKLKHDVEEFAKQFPTIGFEKATMKY 516
BLAST of CN191220 vs. ExPASy Swiss-Prot
Match: GLYM_ARATH (Serine hydroxymethyltransferase, mitochondrial OS=Arabidopsis thaliana GN=SHM1 PE=1 SV=1) HSP 1 Score: 134.035 bits (336), Expect = 7.226e-31 Identity = 66/148 (44.59%), Postives = 102/148 (68.92%), Query Frame = -3 Query: 259 LTGKGYSLVTGGIENHLVFWDIRPLGLTGNKVEKLCDLCNIIVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVTLTLEIQKE-YGKLLKDFNKGLVNNKDIEA----LKADVEKFASSFDMPGFKMSEMKYKD 687 L +GY LV+GG +NHLV +++P G+ G++VEK+ + +I NKN V GD SA+ PGG+R+GTPA+TSRG +E+DF ++ E+F +AVT+ L+++ E G LKDF + ++ I++ L+ +VE+FA F GF+ MKYK+ Sbjct: 370 LMERGYELVSGGTDNHLVLVNLKPKGIDGSRVEKVLEAVHIASNKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAEYFDKAVTIALKVKSEAQGTKLKDFVSAMESSSTIQSEIAKLRHEVEEFAKQFPTIGFEKETMKYKN 517
BLAST of CN191220 vs. ExPASy Swiss-Prot
Match: GLYC_MOUSE (Serine hydroxymethyltransferase, cytosolic OS=Mus musculus GN=Shmt1 PE=1 SV=2) HSP 1 Score: 132.494 bits (332), Expect = 2.102e-30 Identity = 65/139 (46.76%), Postives = 92/139 (66.19%), Query Frame = -3 Query: 289 LTGKGYSLVTGGIENHLVFWDIRPLGLTGNKVEKLCDLCNIIVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVTLTLEIQKEYG--KLLKDFNKGLVNNKDIEA----LKADVEKFASSFDMPG 687 LT GY +VTGG +NHL+ D+R G G + EK+ + C+I NKN GD SAL P G+R+GTPA+TSRGLLE+DF+++ F HR + LTL+IQ LK+F + L ++ I++ L+ +VE FAS+F +PG Sbjct: 336 LTELGYKIVTGGSDNHLILMDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEEDFQKVAHFIHRGIELTLQIQSHMATKATLKEFKEKLAGDEKIQSAVATLREEVENFASNFSLPG 474
BLAST of CN191220 vs. ExPASy Swiss-Prot
Match: GLYC_BOVIN (Serine hydroxymethyltransferase, cytosolic OS=Bos taurus GN=SHMT1 PE=2 SV=3) HSP 1 Score: 131.724 bits (330), Expect = 3.586e-30 Identity = 66/139 (47.48%), Postives = 93/139 (66.91%), Query Frame = -3 Query: 289 LTGKGYSLVTGGIENHLVFWDIRPLGLTGNKVEKLCDLCNIIVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVTLTLEIQKEYG--KLLKDFNKGLV----NNKDIEALKADVEKFASSFDMPG 687 L G GY +VTGG +NHL+ D+R G G + EK+ + C+I NKN GD SAL P G+R+GTPA+TSRGLLE+DF+++ F HR + LTL+IQ G LK+F + L +++ + AL+A+VE FA+ F +PG Sbjct: 342 LMGLGYRVVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEEDFQKVAHFIHRGIELTLQIQDAVGVKATLKEFMEKLAGAEEHHRAVAALRAEVESFATLFPLPG 480
BLAST of CN191220 vs. ExPASy Swiss-Prot
Match: GLYC_CAEEL (Serine hydroxymethyltransferase OS=Caenorhabditis elegans GN=mel-32 PE=1 SV=2) HSP 1 Score: 130.954 bits (328), Expect = 6.117e-30 Identity = 63/133 (47.37%), Postives = 87/133 (65.41%), Query Frame = -3 Query: 289 GYSLVTGGIENHLVFWDIRPLGLTGNKVEKLCDLCNIIVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVTLTLEIQKEYGKLLKDFNKGLVNN----KDIEALKADVEKFASSFDMPG 675 GY+L TGG +NHL+ D+RP+G+ G + E + DL +I NKN GD SAL PGG+R+GTPA+TSRG E+DFE++G+F H V + + E GK LKDF N KD+ L VE+F++ F++PG Sbjct: 371 GYALATGGTDNHLLLVDLRPIGVEGARAEHVLDLAHIACNKNTCPGDVSALRPGGIRLGTPALTSRGFQEQDFEKVGDFIHEGVQIAKKYNAEAGKTLKDFKSFTETNEPFKKDVADLAKRVEEFSTKFEIPG 503
BLAST of CN191220 vs. ExPASy Swiss-Prot
Match: GLYC_SHEEP (Serine hydroxymethyltransferase, cytosolic OS=Ovis aries GN=SHMT1 PE=1 SV=3) HSP 1 Score: 130.568 bits (327), Expect = 7.989e-30 Identity = 66/139 (47.48%), Postives = 91/139 (65.47%), Query Frame = -3 Query: 289 LTGKGYSLVTGGIENHLVFWDIRPLGLTGNKVEKLCDLCNIIVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVTLTLEIQKEYG--KLLKDFNKGLV----NNKDIEALKADVEKFASSFDMPG 687 L G GY +VTGG +NHL+ D+R G G + EK+ + C+I NKN GD SAL P G+R+GTPA+TSRGLLE+DF ++ F HR + LTL+IQ G LK+F + L + + + AL+A+VE FA+ F +PG Sbjct: 342 LMGLGYRVVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEEDFRKVAHFIHRGIELTLQIQDAVGVKATLKEFMEKLAGAEEHQRAVTALRAEVESFATLFPLPG 480 The following BLAST results are available for this feature:
BLAST of CN191220 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 268
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Sequences
The
following sequences are available for this feature:
EST sequence >CN191220 ID=CN191220; Name=CN191220; organism=Citrus sinensis; type=EST; length=695bpback to top |