CX300823

Overview
NameCX300823
Unique NameCX300823
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length427
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7327 contig Csv1_Contig7327:47..473. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300823 vs. ExPASy Swiss-Prot
Match: AB32G_ARATH (ABC transporter G family member 32 OS=Arabidopsis thaliana GN=ABCG32 PE=1 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 1.797e-44
Identity = 78/115 (67.83%), Postives = 97/115 (84.35%), Query Frame = 3
Query:    3 NVAAIIAAPCYMLWNLFSGFMIAHKRIPIYWRWYYWANPIAWSLYGLQTSQFGDDDKLVKLSDGTGSVPVKHLLKDVFGFRHDFLVIAGAMVVAFATIFAMIFAYAIKAFKFQKR 347
            NVA+IIAAP YMLWNLFSGFMI +KRIP++WRWYYWANP+AW+LYGL  SQ+GDD++ VKLSDG   V VK LL+DV G++HDFL ++  MVVAF   F+++FA+AIKAF FQ+R
Sbjct: 1306 NVASIIAAPFYMLWNLFSGFMIPYKRIPLWWRWYYWANPVAWTLYGLLVSQYGDDERSVKLSDGIHQVMVKQLLEDVMGYKHDFLGVSAIMVVAFCVFFSLVFAFAIKAFNFQRR 1420          
BLAST of CX300823 vs. ExPASy Swiss-Prot
Match: PDR6_ORYSJ (Pleiotropic drug resistance protein 6 OS=Oryza sativa subsp. japonica GN=PDR6 PE=2 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 4.012e-36
Identity = 68/114 (59.65%), Postives = 82/114 (71.93%), Query Frame = 3
Query:    6 VAAIIAAPCYMLWNLFSGFMIAHKRIPIYWRWYYWANPIAWSLYGLQTSQFGDDDKLVKLSDGTGSVPVKHLLKDVFGFRHDFLVIAGAMVVAFATIFAMIFAYAIKAFKFQKR 347
            VA IIAAP Y LWNLF GFMI  KRIP +WRWYYWANP++W+LYGL TSQFGD D+ + L+DG  +      L+D FGFRHDFL +   MV  F  +FA++FA AIK   FQ+R
Sbjct: 1337 VAPIIAAPFYTLWNLFCGFMIPRKRIPAWWRWYYWANPVSWTLYGLLTSQFGDLDQPLLLADGITTTTAVDFLRDHFGFRHDFLGVVAGMVAGFCVLFAVVFALAIKYLNFQRR 1450          
BLAST of CX300823 vs. ExPASy Swiss-Prot
Match: PDR1_TOBAC (Pleiotropic drug resistance protein 1 OS=Nicotiana tabacum GN=PDR1 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 5.995e-32
Identity = 64/115 (55.65%), Postives = 84/115 (73.04%), Query Frame = 3
Query:    3 NVAAIIAAPCYMLWNLFSGFMIAHKRIPIYWRWYYWANPIAWSLYGLQTSQFGDDDKLVKLSDGTGSVPVKHLLKDVFGFRHDFLVIAGAMVVAFATIFAMIFAYAIKAFKFQKR 347
            NVA+I+AA  Y +WNLFSGF+I   R+P++WRWYYWANP+AW+LYGL  SQFGD     KLSD   +  V+  L+  FGF+HDFL +  A++ A+  +FA  FA+AIKAF FQ+R
Sbjct: 1325 NVASIVAAFFYGVWNLFSGFIIPRPRMPVWWRWYYWANPVAWTLYGLVASQFGDIQ--TKLSD---NETVEQFLRRYFGFKHDFLGVVAAVLTAYVFMFAFTFAFAIKAFNFQRR 1434          
BLAST of CX300823 vs. ExPASy Swiss-Prot
Match: TUR2_SPIPO (Pleiotropic drug resistance protein TUR2 OS=Spirodela polyrrhiza GN=TUR2 PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 5.075e-31
Identity = 61/115 (53.04%), Postives = 79/115 (68.70%), Query Frame = 3
Query:    3 NVAAIIAAPCYMLWNLFSGFMIAHKRIPIYWRWYYWANPIAWSLYGLQTSQFGDDDKLVKLSDGTGSVPVKHLLKDVFGFRHDFLVIAGAMVVAFATIFAMIFAYAIKAFKFQKR 347
            ++AAI+AA  Y +WN+F+GF+I   RIPI+WRWYYWA P+AW+LYGL  SQFG+    +   D T    VK  L+   GFRHDFL + G MVV F  +FA IFA++IK   FQ+R
Sbjct: 1331 DIAAIVAAAFYAIWNIFAGFIIPRPRIPIWWRWYYWACPVAWTLYGLVVSQFGEYTDTMSDVDET----VKDFLRRFLGFRHDFLPVVGVMVVVFTVLFASIFAFSIKTLNFQRR 1441          
BLAST of CX300823 vs. ExPASy Swiss-Prot
Match: PDR1_NICPL (Pleiotropic drug resistance protein 1 OS=Nicotiana plumbaginifolia GN=PDR1 PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.131e-30
Identity = 63/116 (54.31%), Postives = 79/116 (68.10%), Query Frame = 3
Query:    3 NVAAIIAAPCYMLWNLFSGFMIAHKRIPIYWRWYYWANPIAWSLYGLQTSQFGD-DDKLVKLSDGTGSVPVKHLLKDVFGFRHDFLVIAGAMVVAFATIFAMIFAYAIKAFKFQKR 347
            NVA+I+A   Y +WNLFSGF++   RIPI+WRWYYW  PIAW+LYGL  SQFGD  D L   +       V+  L+  FGF+HDFL +  A++VAFA +FA  FA  IKAF FQ+R
Sbjct: 1326 NVASIVAGFFYTVWNLFSGFIVPRPRIPIWWRWYYWGCPIAWTLYGLVASQFGDLQDPLTDQNQ-----TVEQFLRSNFGFKHDFLGVVAAVIVAFAVVFAFTFALGIKAFNFQRR 1436          
BLAST of CX300823 vs. ExPASy Swiss-Prot
Match: AB39G_ARATH (ABC transporter G family member 39 OS=Arabidopsis thaliana GN=ABCG39 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 1.929e-30
Identity = 59/114 (51.75%), Postives = 78/114 (68.42%), Query Frame = 3
Query:    6 VAAIIAAPCYMLWNLFSGFMIAHKRIPIYWRWYYWANPIAWSLYGLQTSQFGDDDKLVKLSDGTGSVPVKHLLKDVFGFRHDFLVIAGAMVVAFATIFAMIFAYAIKAFKFQKR 347
            +A I  +    LWNLFSGF+I   +IPI+WRWYYWA P+AW+LYGL TSQ GD D +V +S G G + +K LLK+ FGF HDFL +   + +A+  +F  +FAY IK   FQ+R
Sbjct: 1342 IAGICMSFFLSLWNLFSGFLIPRPQIPIWWRWYYWATPVAWTLYGLITSQVGDKDSMVHIS-GIGDIDLKTLLKEGFGFEHDFLPVVAVVHIAWILLFLFVFAYGIKFLNFQRR 1454          
BLAST of CX300823 vs. ExPASy Swiss-Prot
Match: PDR3_ORYSJ (Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. japonica GN=PDR3 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 2.358e-28
Identity = 57/115 (49.57%), Postives = 80/115 (69.57%), Query Frame = 3
Query:    3 NVAAIIAAPCYMLWNLFSGFMIAHKRIPIYWRWYYWANPIAWSLYGLQTSQFGDDDKLVKLSDGTGSVPVKHLLKDVFGFRHDFLVIAGAMVVAFATIFAMIFAYAIKAFKFQKR 347
            ++A+I+++  Y +WNLFSGF+I   R+PI+WRWY WA P+AW+LYGL  SQFGD +    + DGT   PVK  +++ FGF+H +L     +V AFA +FA +F +AI  F FQKR
Sbjct: 1348 HIASIVSSAFYAIWNLFSGFVIPRPRVPIWWRWYCWACPVAWTLYGLVVSQFGDIE--TPMEDGT---PVKVFVENYFGFKHSWLGWVATVVAAFAFLFASLFGFAIMKFNFQKR 1457          
BLAST of CX300823 vs. ExPASy Swiss-Prot
Match: PDR3_ORYSI (Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. indica GN=PDR3 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 2.358e-28
Identity = 57/115 (49.57%), Postives = 80/115 (69.57%), Query Frame = 3
Query:    3 NVAAIIAAPCYMLWNLFSGFMIAHKRIPIYWRWYYWANPIAWSLYGLQTSQFGDDDKLVKLSDGTGSVPVKHLLKDVFGFRHDFLVIAGAMVVAFATIFAMIFAYAIKAFKFQKR 347
            ++A+I+++  Y +WNLFSGF+I   R+PI+WRWY WA P+AW+LYGL  SQFGD +    + DGT   PVK  +++ FGF+H +L     +V AFA +FA +F +AI  F FQKR
Sbjct: 1348 HIASIVSSAFYAIWNLFSGFVIPRPRVPIWWRWYCWACPVAWTLYGLVVSQFGDIE--TPMEDGT---PVKVFVENYFGFKHSWLGWVATVVAAFAFLFASLFGFAIMKFNFQKR 1457          
BLAST of CX300823 vs. ExPASy Swiss-Prot
Match: AB34G_ARATH (ABC transporter G family member 34 OS=Arabidopsis thaliana GN=ABCG34 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 5.252e-28
Identity = 56/114 (49.12%), Postives = 77/114 (67.54%), Query Frame = 3
Query:    6 VAAIIAAPCYMLWNLFSGFMIAHKRIPIYWRWYYWANPIAWSLYGLQTSQFGDDDKLVKLSDGTGSVPVKHLLKDVFGFRHDFLVIAGAMVVAFATIFAMIFAYAIKAFKFQKR 347
            +A I  +     WNLFSGF+I   +IPI+WRWYYWA+P+AW+LYG+ TSQ GD D +V ++ G G + +K LLK+ FGF +DFL +   + +A+  IF   FAY IK   FQ+R
Sbjct: 1341 IAGICLSFFLSFWNLFSGFLIPRPQIPIWWRWYYWASPVAWTLYGIITSQVGDRDSIVHIT-GVGDMSLKTLLKNGFGFDYDFLPVVAVVHIAWILIFLFAFAYGIKFLNFQRR 1453          
BLAST of CX300823 vs. ExPASy Swiss-Prot
Match: PDR7_ORYSJ (Putative pleiotropic drug resistance protein 7 OS=Oryza sativa subsp. japonica GN=PDR7 PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 6.860e-28
Identity = 56/115 (48.70%), Postives = 77/115 (66.96%), Query Frame = 3
Query:    3 NVAAIIAAPCYMLWNLFSGFMIAHKRIPIYWRWYYWANPIAWSLYGLQTSQFGDDDKLVKLSDGTGSVPVKHLLKDVFGFRHDFLVIAGAMVVAFATIFAMIFAYAIKAFKFQKR 347
            ++AAI++   Y +WN+F+GF+I   RIPI+WRWY WA P+AW+LYGL  SQ+GD      L DG     V+  ++  FGFRHD+L      VV FA +FA +FA++IK F FQ+R
Sbjct: 1334 DIAAIVSTAFYCIWNIFAGFLIPRPRIPIWWRWYSWACPVAWTLYGLVASQYGDITNST-LEDGE---VVQDYIRRYFGFRHDYLGYVATAVVGFAALFAFVFAFSIKVFNFQRR 1444          
The following BLAST results are available for this feature:
BLAST of CX300823 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
AB32G_ARATH1.797e-4467.83ABC transporter G family member 32 OS=Arabidopsis ... [more]
PDR6_ORYSJ4.012e-3659.65Pleiotropic drug resistance protein 6 OS=Oryza sat... [more]
PDR1_TOBAC5.995e-3255.65Pleiotropic drug resistance protein 1 OS=Nicotiana... [more]
TUR2_SPIPO5.075e-3153.04Pleiotropic drug resistance protein TUR2 OS=Spirod... [more]
PDR1_NICPL1.131e-3054.31Pleiotropic drug resistance protein 1 OS=Nicotiana... [more]
AB39G_ARATH1.929e-3051.75ABC transporter G family member 39 OS=Arabidopsis ... [more]
PDR3_ORYSJ2.358e-2849.57Pleiotropic drug resistance protein 3 OS=Oryza sat... [more]
PDR3_ORYSI2.358e-2849.57Pleiotropic drug resistance protein 3 OS=Oryza sat... [more]
AB34G_ARATH5.252e-2849.12ABC transporter G family member 34 OS=Arabidopsis ... [more]
PDR7_ORYSJ6.860e-2848.70Putative pleiotropic drug resistance protein 7 OS=... [more]

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Properties
Property NameValue
Genbank descriptionC08002F04SK PhyRootSw1 Citrus sinensis cDNA clone C08002F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300823 ID=CX300823; Name=CX300823; organism=Citrus sinensis; type=EST; length=427bp
ATAATGTGGCTGCCATTATTGCTGCTCCCTGTTATATGCTTTGGAACCTT
TTCAGCGGCTTTATGATTGCCCACAAGAGAATTCCCATTTACTGGAGATG
GTATTACTGGGCGAACCCTATAGCATGGAGTCTGTACGGCCTCCAGACTT
CACAATTTGGTGACGACGATAAACTTGTGAAGCTTTCAGATGGAACTGGC
TCGGTTCCTGTGAAGCACTTACTGAAGGATGTGTTTGGGTTTAGGCATGA
TTTCTTGGTAATAGCCGGTGCTATGGTGGTTGCTTTCGCCACCATTTTTG
CAATGATATTTGCTTATGCAATAAAAGCCTTCAAGTTCCAAAAGAGATGA
CAAGGTGAAGGTGGCTTCATTTGTATGAGAACAAAGTCGCAAGTTCATCA
GTTTCCTCGTAGAAATGAAGTTTAAGA
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