CX043857

Overview
NameCX043857
Unique NameCX043857
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length780
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11804 contig Csv1_Contig11804:79..858. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043857 vs. ExPASy Swiss-Prot
Match: LEUC_ARATH (3-isopropylmalate dehydratase OS=Arabidopsis thaliana GN=IIL1 PE=2 SV=1)

HSP 1 Score: 370.548 bits (950), Expect = 5.589e-102
Identity = 174/231 (75.32%), Postives = 202/231 (87.45%), Query Frame = 1
Query:   88 SSVISPAPTSSFINNKKDLGSFCFSSTSQFSVNKCKKLAVSKKIVSVMAPQQSERRPATTGSVKNAMTLTEKIFARASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDASFILGTGKVLL 780
            +SVIS +P     ++K DLG   F  +SQ S+++C+K ++S+KIVSVMAPQ+ +R P TTGSVK  MT+TEKI ARASEK  + PGDN+WVNVD+LMTHDVCGPG+FGIFK+EFGE AKVWD EKIV+IPDHYIFT+D+RANRNVDI+R+ C EQNIKYFYDI DLGNFKANPDYKGVCH+ALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDA F+LGTGK+LL
Sbjct:    2 ASVISSSPFLCKSSSKSDLGISSFPKSSQISIHRCQKKSISRKIVSVMAPQK-DRSPGTTGSVKTGMTMTEKILARASEKSLVVPGDNIWVNVDVLMTHDVCGPGAFGIFKREFGEKAKVWDPEKIVVIPDHYIFTADKRANRNVDIMREHCREQNIKYFYDITDLGNFKANPDYKGVCHVALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKILL 231          
BLAST of CX043857 vs. ExPASy Swiss-Prot
Match: LEUC_METJA (Isopropylmalate/citramalate isomerase large subunit OS=Methanocaldococcus jannaschii GN=leuC PE=1 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.691e-37
Identity = 80/163 (49.08%), Postives = 105/163 (64.42%), Query Frame = 1
Query:  286 MTLTEKIFARASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDASFILGTGKV 774
            MT+ EKI A+AS K ++SPGD V  N+D+ M HD+ GP +    K E+G   KVW+ EKIVI+ DH +     +A  N  ++R F  EQ IKYFYDI++           GVCH  L ++GH  PGEV++G DSHTCT GAFG FATGIG+TD + +  TGK+
Sbjct:    3 MTIVEKILAKASGKKEVSPGDIVMANIDVAMVHDITGPLTVNTLK-EYGIE-KVWNPEKIVILFDHQVPADSIKAAENHILMRKFVKEQGIKYFYDIRE-----------GVCHQVLPEKGHVAPGEVVVGADSHTCTHGAFGAFATGIGSTDMAHVFATGKL 152          
BLAST of CX043857 vs. ExPASy Swiss-Prot
Match: LEUC1_METTH (3-isopropylmalate dehydratase large subunit 1 OS=Methanobacterium thermoautotrophicum GN=leuC1 PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.454e-35
Identity = 78/164 (47.56%), Postives = 107/164 (65.24%), Query Frame = 1
Query:  283 AMTLTEKIFARASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDASFILGTGKV 774
            +MT++EKI ARAS K ++  G+ V  ++D+ MTHD+ GP S   F+   GE+ +VWD EKIV+I DH +      A +N  I+RDF  EQ I+ FYD+++           GVCH  L ++GH  PGEV++GTDSHTCT GA G FATGIG+TD + +  TGK+
Sbjct:    2 SMTVSEKILARASGKDRVEAGEIVMADIDVAMTHDLTGPLSVESFRA-IGED-RVWDPEKIVVIFDHQVPADSIEAAQNHMIMRDFVEEQGIRNFYDVRE-----------GVCHQVLPEKGHVVPGEVVVGTDSHTCTHGALGAFATGIGSTDMAMVFATGKL 152          
BLAST of CX043857 vs. ExPASy Swiss-Prot
Match: LEUC1_METKA (3-isopropylmalate dehydratase large subunit 1 OS=Methanopyrus kandleri GN=leuC1 PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.562e-30
Identity = 69/162 (42.59%), Postives = 97/162 (59.88%), Query Frame = 1
Query:  289 TLTEKIFARASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDASFILGTGKV 774
            T+ EKI +RAS +     GD V  N+D+ M HD+ GP    + + E     +VWD  KIV++ DH +      A  N  I+R+F  EQ I++FYD+++           GVCH  L ++GH RPG+V++G DSHTCT GA G FATGIG+TD + +  TGK+
Sbjct:    4 TMAEKILSRASGE-DAEAGDIVVANIDVAMVHDITGP--ITVQRLEEMGVERVWDPSKIVVLFDHQVPADSVEAAENHKIMREFVEEQGIEHFYDVRE-----------GVCHQVLPEKGHVRPGDVIVGADSHTCTHGALGAFATGIGSTDMAAVFATGKL 151          
BLAST of CX043857 vs. ExPASy Swiss-Prot
Match: LEUC2_METMA (3-isopropylmalate dehydratase large subunit 2 OS=Methanosarcina mazei GN=leuC2 PE=3 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 3.346e-30
Identity = 73/167 (43.71%), Postives = 103/167 (61.68%), Query Frame = 1
Query:  286 MTLTEKIFARASEKPQLSPGDNVWVNVDILMTHDVCGP----GSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDASFILGTGKV 774
            MT++EKIF++AS  P +  GD V  N+D+ MTHD+ GP    G + I + E  E+ KVWD  KIVII DH +      A +N  +LR F  EQ I   YD+           Y+GVCH  L ++GH +PG++++G+DSHTC  G+ G F+TGIG+TD + +  TGK+
Sbjct:    1 MTVSEKIFSKASGTP-VKAGDFVLANIDLAMTHDITGPLAVQGFYEIMRDE--EDKKVWDPSKIVIIFDHQVPADSINAAQNHIMLRKFAKEQGILN-YDV-----------YEGVCHQVLPEKGHVKPGDLIVGSDSHTCAYGSLGAFSTGIGSTDMAAVFATGKL 152          
BLAST of CX043857 vs. ExPASy Swiss-Prot
Match: LEUC2_METAC (3-isopropylmalate dehydratase large subunit 2 OS=Methanosarcina acetivorans GN=leuC2 PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.660e-29
Identity = 73/167 (43.71%), Postives = 100/167 (59.88%), Query Frame = 1
Query:  286 MTLTEKIFARASEKPQLSPGDNVWVNVDILMTHDVCGP----GSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDASFILGTGKV 774
            MT++EKIF++AS  P +  GD V  N+D+ MTHD+ GP    G + I + E  E  KVWD  KIVII DH +      A  N  +LR F  EQ I   YD+           Y+GVCH  L ++GH  PG++++G+DSHTC  G+ G F+TGIG+TD + +  TGK+
Sbjct:    1 MTVSEKIFSKASGTP-VKAGDFVLANIDLAMTHDITGPLAVQGFYEIMRDE--EEKKVWDPSKIVIIFDHQVPADSINAAENHIMLRKFAKEQGILN-YDV-----------YEGVCHQVLPEKGHVLPGDLIVGSDSHTCAYGSLGAFSTGIGSTDMAAVFATGKL 152          
BLAST of CX043857 vs. ExPASy Swiss-Prot
Match: LEUC_SYNAS (3-isopropylmalate dehydratase large subunit OS=Syntrophus aciditrophicus (strain SB) GN=leuC PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.462e-27
Identity = 64/163 (39.26%), Postives = 99/163 (60.74%), Query Frame = 1
Query:  286 MTLTEKIFARASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDASFILGTGKV 774
            MT+TEKI  R ++  ++ PG  +   VDI + +DV  P +   F+K  G+  KV+DR+K+V+IPDH+    D  +     I+RDF  EQ I ++Y++ ++G          V H  L ++G   PG++++G DSHTCT GA G FATG+G+TD +  + TG+V
Sbjct:    3 MTITEKILCRHTDLDEVRPGMLINAKVDIALGNDVTAPLAIDEFRKAGGK--KVFDRDKVVLIPDHFTPNKDINSAAQCKIMRDFAREQEITHYYEVGEVG----------VEHALLPEKGIVLPGDLVIGADSHTCTYGALGAFATGVGSTDLAAAMLTGEV 153          
BLAST of CX043857 vs. ExPASy Swiss-Prot
Match: LEUC1_ARCFU (3-isopropylmalate dehydratase large subunit 1 OS=Archaeoglobus fulgidus GN=leuC1 PE=3 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 5.906e-27
Identity = 66/164 (40.24%), Postives = 93/164 (56.71%), Query Frame = 1
Query:  283 AMTLTEKIFARASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDASFILGTGKV 774
            A TL EKIF++AS K ++  G+ V  N+D+ M HD+  P +   F++  G +AKVWD+ K+++  DH +      A  N  +LR F  EQ I   YD+K            G+ H  +  E H  PG +++G DSHTC  GA G FATGIG+TD  F+L  GK+
Sbjct:    2 AQTLVEKIFSKASGK-EVKAGEFVMANIDLAMIHDITAPLAIKAFREILGSDAKVWDKSKVIMAFDHQVPADSVHAAENHKMLRKFAEEQGILN-YDVKG-----------GIAHQIMV-ENHVEPGMLIVGADSHTCMYGALGAFATGIGSTDMGFVLAMGKL 151          
BLAST of CX043857 vs. ExPASy Swiss-Prot
Match: LEUC_DESAA (3-isopropylmalate dehydratase large subunit OS=Desulfatibacillum alkenivorans (strain AK-01) GN=leuC PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.828e-26
Identity = 61/165 (36.97%), Postives = 99/165 (60.00%), Query Frame = 1
Query:  286 MTLTEKIFARASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDASFILGTGKVLL 780
            MT+ EKI A  + + + SPGD +   VDI + +D+  P +  +F++     AKV+D++++V++PDH+  T D  +   V ++RDF  EQ + ++Y+  D           GV H  L ++G   PG++++G DSHTCT G  G FATG+G+TD +  + TG+V L
Sbjct:    3 MTIAEKILAAHAGQEEASPGDLINAKVDIALGNDITAPIAIKLFRQSGA--AKVFDKDRVVLVPDHFTPTKDINSAMQVKMVRDFAREQELSHWYEGGD----------SGVEHALLPEKGIVGPGDLVIGADSHTCTYGGLGAFATGVGSTDLAAAMITGEVWL 155          
BLAST of CX043857 vs. ExPASy Swiss-Prot
Match: LEUC_THEYD (3-isopropylmalate dehydratase large subunit OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) GN=leuC PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.900e-25
Identity = 59/162 (36.42%), Postives = 99/162 (61.11%), Query Frame = 1
Query:  286 MTLTEKIFARASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDASFILGTGK 771
            MT+ EKI A  + K +++PG+ +   VDI++ +D+  P +   F+K   ++  V+DRE+I ++PDH+    D +A     +LR+F  +  IK++++I  +G          + H  L +EG   PG++++G DSHTCT GA G FATG+G+TDA+  + TG+
Sbjct:    3 MTIAEKILAAHAGKKEVTPGEIINAKVDIVLANDITAPIAIKEFEKLGVKD--VFDRERIALVPDHFTPQKDIKAAEQCKMLREFAQKYKIKHYFEIGRVG----------IEHALLPEEGIVLPGDLVIGADSHTCTYGALGAFATGVGSTDAAIAMATGE 152          
The following BLAST results are available for this feature:
BLAST of CX043857 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
LEUC_ARATH5.589e-10275.323-isopropylmalate dehydratase OS=Arabidopsis thali... [more]
LEUC_METJA3.691e-3749.08Isopropylmalate/citramalate isomerase large subuni... [more]
LEUC1_METTH3.454e-3547.563-isopropylmalate dehydratase large subunit 1 OS=M... [more]
LEUC1_METKA2.562e-3042.593-isopropylmalate dehydratase large subunit 1 OS=M... [more]
LEUC2_METMA3.346e-3043.713-isopropylmalate dehydratase large subunit 2 OS=M... [more]
LEUC2_METAC1.660e-2943.713-isopropylmalate dehydratase large subunit 2 OS=M... [more]
LEUC_SYNAS3.462e-2739.263-isopropylmalate dehydratase large subunit OS=Syn... [more]
LEUC1_ARCFU5.906e-2740.243-isopropylmalate dehydratase large subunit 1 OS=A... [more]
LEUC_DESAA3.828e-2636.973-isopropylmalate dehydratase large subunit OS=Des... [more]
LEUC_THEYD1.900e-2536.423-isopropylmalate dehydratase large subunit OS=The... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS07_13H03_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-13H03-P5-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043857 ID=CX043857; Name=CX043857; organism=Citrus sinensis; type=EST; length=780bp
CTAAATTTAGACACTCTTAAATCTTAATCCCTACAGAACAAACCAAACCA
AAAAAAAACAGGCCTCTTGTAGCAAATAAACATGGCTTCCTCTGTCATTT
CCCCAGCTCCAACATCTTCTTTCATCAACAACAAGAAGGATTTGGGTAGC
TTTTGTTTTTCGTCGACATCACAATTTTCAGTCAACAAATGCAAGAAATT
GGCAGTCTCCAAGAAAATTGTGTCGGTCATGGCACCTCAGCAATCAGAAC
GCCGGCCTGCCACCACTGGCTCGGTAAAAAATGCGATGACGTTGACGGAG
AAGATATTTGCCAGGGCTTCAGAGAAACCCCAGTTGAGCCCGGGAGACAA
TGTGTGGGTTAATGTTGATATCTTGATGACCCACGATGTTTGTGGCCCCG
GCTCCTTTGGTATCTTTAAAAAAGAGTTTGGTGAAAATGCTAAGGTTTGG
GACCGTGAAAAGATTGTCATTATACCTGATCATTATATATTCACAAGTGA
TGAACGTGCAAATCGTAATGTGGATATCCTGAGGGATTTCTGCATGGAGC
AGAATATCAAGTACTTTTATGATATTAAAGATCTTGGTAACTTTAAGGCT
AACCCGGATTATAAAGGCGTATGTCATATTGCACTTGCCCAAGAAGGCCA
TTGCAGGCCTGGAGAGGTCTTGCTAGGTACAGACTCCCACACATGTACTG
CTGGAGCATTTGGCCAATTTGCCACTGGCATTGGCAACACTGATGCAAGT
TTTATATTGGGCACAGGGAAAGTCTTGCTC
back to top