CX043950

Overview
NameCX043950
Unique NameCX043950
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length542
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043950 vs. ExPASy Swiss-Prot
Match: G3PC_ARATH (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Arabidopsis thaliana GN=GAPC PE=2 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 1.948e-31
Identity = 66/71 (92.96%), Postives = 68/71 (95.77%), Query Frame = -3
Query:  328 KAESEGKLKGILGYTEDDVVSPDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 540
            K ESEGKLKGILGYTEDDVVS DFVGD+RSSIFDAKAGIALS KFVKLVSWYDNEWGYS+RVVDLIVHMSK
Sbjct:  267 KEESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSDKFVKLVSWYDNEWGYSSRVVDLIVHMSK 337          
BLAST of CX043950 vs. ExPASy Swiss-Prot
Match: G3PC_ANTMA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Antirrhinum majus GN=GAPC PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 5.669e-31
Identity = 65/73 (89.04%), Postives = 67/73 (91.78%), Query Frame = -3
Query:  322 KAESEGKLKGILGYTEDDVVSPDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSKTQ 540
            K ESEGKLKGILGYTEDDVVS DFVGDSRSSIFDAKAGIAL+  FVKLVSWYDNEWGYSTRVVDLIVHM+  Q
Sbjct:  265 KEESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALNDNFVKLVSWYDNEWGYSTRVVDLIVHMASVQ 337          
BLAST of CX043950 vs. ExPASy Swiss-Prot
Match: G3PC_SINAL (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Sinapis alba GN=GAPC PE=2 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 7.403e-31
Identity = 64/71 (90.14%), Postives = 67/71 (94.37%), Query Frame = -3
Query:  328 KAESEGKLKGILGYTEDDVVSPDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 540
            K ES+GKLKGILGYTEDDVVS DFVGD+RSSIFDAKAGIALS  FVKLVSWYDNEWGYSTRVVDLI+HMSK
Sbjct:  267 KEESQGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSDNFVKLVSWYDNEWGYSTRVVDLIIHMSK 337          
BLAST of CX043950 vs. ExPASy Swiss-Prot
Match: G3PC_RANAC (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Ranunculus acris GN=GAPC PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.263e-30
Identity = 64/73 (87.67%), Postives = 68/73 (93.15%), Query Frame = -3
Query:  322 KAESEGKLKGILGYTEDDVVSPDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSKTQ 540
            K ESEGKLKGILGYTEDDVVS DF+GD+RSSIFDAKAGIAL+   VKLVSWYDNEWGYS+RVVDLIVHMSKTQ
Sbjct:  266 KEESEGKLKGILGYTEDDVVSTDFIGDNRSSIFDAKAGIALNDNCVKLVSWYDNEWGYSSRVVDLIVHMSKTQ 338          
BLAST of CX043950 vs. ExPASy Swiss-Prot
Match: G3PC_GINBI (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Ginkgo biloba PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 2.813e-30
Identity = 62/72 (86.11%), Postives = 67/72 (93.06%), Query Frame = -3
Query:  325 KAESEGKLKGILGYTEDDVVSPDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSKT 540
            K ESEGKLKGILGYTEDDVVS DF+GD+RSSIFDAKAGIALS  FVKLVSWYDNEWGYS+RV+DLIVHM+ T
Sbjct:  268 KEESEGKLKGILGYTEDDVVSTDFIGDNRSSIFDAKAGIALSDNFVKLVSWYDNEWGYSSRVIDLIVHMAST 339          
BLAST of CX043950 vs. ExPASy Swiss-Prot
Match: G3PC_TAXBA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Taxus baccata PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 3.674e-30
Identity = 62/72 (86.11%), Postives = 66/72 (91.67%), Query Frame = -3
Query:  325 KAESEGKLKGILGYTEDDVVSPDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSKT 540
            K ESEGKLKGILGYTEDDVVS DF+GDSRSSIFDAKAGIAL+  FVKLVSWYDNEWGYS+RV+DLIVHM  T
Sbjct:  268 KEESEGKLKGILGYTEDDVVSTDFIGDSRSSIFDAKAGIALNDNFVKLVSWYDNEWGYSSRVIDLIVHMDST 339          
BLAST of CX043950 vs. ExPASy Swiss-Prot
Match: G3PC_DIACA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Dianthus caryophyllus GN=GAPC PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 6.267e-30
Identity = 62/72 (86.11%), Postives = 66/72 (91.67%), Query Frame = -3
Query:  325 KAESEGKLKGILGYTEDDVVSPDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSKT 540
            K ESEGKLKGILGYTEDDVVS DFVGD+RSSIFDAKAGIAL+  F+KLVSWYDNEWGYSTRVVDLI H+ KT
Sbjct:  265 KEESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALNDNFIKLVSWYDNEWGYSTRVVDLIAHIHKT 336          
BLAST of CX043950 vs. ExPASy Swiss-Prot
Match: G3PC_TOBAC (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic (Fragment) OS=Nicotiana tabacum GN=GAPC PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 8.185e-30
Identity = 62/70 (88.57%), Postives = 66/70 (94.29%), Query Frame = -3
Query:  331 KAESEGKLKGILGYTEDDVVSPDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMS 540
            K ESEGKLKGILG+TEDDVVS DFVGDSRSSIFDAKAGIALSK FVKLVSWYDNEWGYS+RV+DLI HM+
Sbjct:  254 KEESEGKLKGILGFTEDDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLICHMA 323          
BLAST of CX043950 vs. ExPASy Swiss-Prot
Match: G3PC_PINSY (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Pinus sylvestris GN=GAPC PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 8.185e-30
Identity = 63/73 (86.30%), Postives = 67/73 (91.78%), Query Frame = -3
Query:  322 KAESEGKLKGILGYTEDDVVSPDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSKTQ 540
            KAESEG LKGILGYTED VVS DF+GDSRSSIFDA+AGIALS  FVKLVSWYDNEWGYS+RVVDLIVHM+ TQ
Sbjct:  268 KAESEGNLKGILGYTEDAVVSTDFIGDSRSSIFDAQAGIALSDNFVKLVSWYDNEWGYSSRVVDLIVHMAATQ 340          
BLAST of CX043950 vs. ExPASy Swiss-Prot
Match: G3PC_MESCR (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Mesembryanthemum crystallinum GN=GAPC PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 8.185e-30
Identity = 61/73 (83.56%), Postives = 68/73 (93.15%), Query Frame = -3
Query:  322 KAESEGKLKGILGYTEDDVVSPDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSKTQ 540
            K ESEGKLKGILGYTEDD+VS DF+GD+RSSIFDAKAGI+L+  FVKLVSWYDNEWGYSTRVVDLI+H+SK Q
Sbjct:  265 KEESEGKLKGILGYTEDDLVSTDFIGDNRSSIFDAKAGISLNDNFVKLVSWYDNEWGYSTRVVDLIMHISKCQ 337          
The following BLAST results are available for this feature:
BLAST of CX043950 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 197
Match NameE-valueIdentityDescription
G3PC_ARATH1.948e-3192.96Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_ANTMA5.669e-3189.04Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_SINAL7.403e-3190.14Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_RANAC1.263e-3087.67Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_GINBI2.813e-3086.11Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_TAXBA3.674e-3086.11Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_DIACA6.267e-3086.11Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_TOBAC8.185e-3088.57Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_PINSY8.185e-3086.30Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_MESCR8.185e-3083.56Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_14E02_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14E02-J4-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043950 ID=CX043950; Name=CX043950; organism=Citrus sinensis; type=EST; length=542bp
TTTTTTTTTTTTTTTTTAACCGCTGAAGAACAGGTCTTCGATACTAACTA
GATGAAAAATTATAAAAGCAAGTTTCCAATAGACAATTGTTTTCTCGCTA
ACAAAACATAAGTTGGTTCACCAACTCTTCTTGCATACTACAAGGGAAAA
TCTAAGCACAACCCTGCATGAGCAGGTAAGGCTCTGGATAATGTCTTGGA
AACAATTTTATTTAAACTCAAACCCTCTACATAAAAACACAAACACCACA
TTTAGCACAAAGAAACACCACACTTAGCACAACTAAGCGTGTTACATACT
CAAGCCACGCCGAGTAAGTTACTGGGTCTTCGACATGTGGACAATCAAAT
CCACCACACGAGTACTGTAGCCCCACTCATTGTCATACCATGAGACAAGC
TTCACAAATTTCTTACTCAAAGCAATACCAGCCTTGGCATCAAAGATACT
TGACCTACTGTCACCAACAAAGTCGGGGGATACCACATCATCCTCAGTGT
ATCCCAAGATACCCTTTAGTTTCCCCTCTGACTCCGCCTTGA
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