CX300812

Overview
NameCX300812
Unique NameCX300812
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length477
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300812 vs. ExPASy Swiss-Prot
Match: NDUS1_RECAM (NADH-ubiquinone oxidoreductase 75 kDa subunit OS=Reclinomonas americana GN=NAD11 PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 5.368e-42
Identity = 75/139 (53.96%), Postives = 98/139 (70.50%), Query Frame = 1
Query:   61 INLTIDNILVEVSEKLSIIESCELAGVVVPRFCYHEILSVSGNCRMCVVEVDTIEKPVASCATEAKGGMDVYTNNAFVKKARENVVEFLLLNHPLDCPICDQAGECDLQDQVKAYGSSQARFFGLKKTKEDRLCNPFIK 477
            +N+ +D + VEV +  +I+++C   G+ +PRFCYHE LS++GNCRMC+VEV+   KPVASCA      M ++TN   VKKARE V+EFLL+NHPLDCPICDQ GECDLQD    YGS + RF   K+  ED+   P +K
Sbjct:    2 VNVFVDGLSVEVKKGATILQACAQVGIEIPRFCYHERLSIAGNCRMCLVEVEKSPKPVASCAMPVMDNMKIFTNTPLVKKAREGVLEFLLVNHPLDCPICDQGGECDLQDLTMVYGSDRGRFHEYKRGVEDKNIGPLVK 140          
BLAST of CX300812 vs. ExPASy Swiss-Prot
Match: NDUS1_SOLTU (NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 2.664e-41
Identity = 74/139 (53.24%), Postives = 102/139 (73.38%), Query Frame = 1
Query:   61 INLTIDNILVEVSEKLSIIESCELAGVVVPRFCYHEILSVSGNCRMCVVEVDTIEKPVASCATEAKGGMDVYTNNAFVKKARENVVEFLLLNHPLDCPICDQAGECDLQDQVKAYGSSQARFFGLKKTKEDRLCNPFIK 477
            I + +D   V++ + ++++++CE+AGV +PRFCYH  LS++GNCRMC+VEV+   KPVASCA  A  GM + T+    KKARE V+EFLL+NHPLDCPICDQ GECDLQDQ  A+GS + RF  +K++  D+   P +K
Sbjct:   68 IEVFVDGYPVKIPKGMTVLQACEIAGVDIPRFCYHSRLSIAGNCRMCLVEVEKSPKPVASCAMPALPGMKIKTDTPIAKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFTEMKRSVVDKNLGPLVK 206          
BLAST of CX300812 vs. ExPASy Swiss-Prot
Match: NDUS1_ARATH (NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial OS=Arabidopsis thaliana GN=EMB1467 PE=1 SV=2)

HSP 1 Score: 167.548 bits (423), Expect = 2.664e-41
Identity = 75/139 (53.96%), Postives = 101/139 (72.66%), Query Frame = 1
Query:   61 INLTIDNILVEVSEKLSIIESCELAGVVVPRFCYHEILSVSGNCRMCVVEVDTIEKPVASCATEAKGGMDVYTNNAFVKKARENVVEFLLLNHPLDCPICDQAGECDLQDQVKAYGSSQARFFGLKKTKEDRLCNPFIK 477
            I + +D   V+V +  +++++CE+AGV +PRFCYH  LS++GNCRMC+VEV+   KPVASCA  A  GM + T+    KKARE V+EFLL+NHPLDCPICDQ GECDLQDQ  A+GS + RF  +K++  D+   P +K
Sbjct:   74 IEVFVDGYAVKVPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEKSPKPVASCAMPALPGMKIKTDTPIAKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFTEMKRSVVDKNLGPLVK 212          
BLAST of CX300812 vs. ExPASy Swiss-Prot
Match: NDUS1_NEUCR (NADH-ubiquinone oxidoreductase 78 kDa subunit, mitochondrial OS=Neurospora crassa GN=nuo-78 PE=1 SV=2)

HSP 1 Score: 164.081 bits (414), Expect = 2.945e-40
Identity = 78/141 (55.32%), Postives = 97/141 (68.79%), Query Frame = 1
Query:   61 INLTIDNILVEVSEKLSIIESCELAGVVVPRFCYHEILSVSGNCRMCVVEVDTIEKPVASCATEAKGGMDVYTNNAFVKKARENVVEFLLLNHPLDCPICDQAGECDLQDQVKAYGSSQARF--FGLKKTKEDRLCNPFIK 477
            + LTID   V +    ++I++CE AGV +PR+CYHE L ++GNCRMC+VEV+ + KPVASCA   + GM V TN+    KARE V+EFLL NHPLDCPICDQ GECDLQDQ   YG  + RF   G K+  ED+   P IK
Sbjct:   36 VELTIDGKKVSIEAGSALIQACEKAGVTIPRYCYHEKLMIAGNCRMCLVEVEKVPKPVASCAWPVQPGMVVKTNSPLTHKAREGVMEFLLANHPLDCPICDQGGECDLQDQSMRYGGDRGRFHEVGGKRAVEDKNMGPLIK 176          
BLAST of CX300812 vs. ExPASy Swiss-Prot
Match: NUOG_RICBR (NADH-quinone oxidoreductase subunit G OS=Rickettsia bellii (strain RML369-C) GN=nuoG PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 6.562e-40
Identity = 75/139 (53.96%), Postives = 96/139 (69.06%), Query Frame = 1
Query:   61 INLTIDNILVEVSEKLSIIESCELAGVVVPRFCYHEILSVSGNCRMCVVEVDTIEKPVASCATEAKGGMDVYTNNAFVKKARENVVEFLLLNHPLDCPICDQAGECDLQDQVKAYGSSQARFFGLKKTKEDRLCNPFIK 477
            I LTID   +EVSE  ++ ++C  AG  +P FCYHE L ++GNCRMC+VE++   KP+ASCA     GM ++T+   VKKARE V+EFLL+NHPLDCPICDQ GECDLQDQ   YG    RF   K++ +D+   P IK
Sbjct:    2 IKLTIDGQEIEVSEGTTVYQACTKAGKEIPHFCYHERLKIAGNCRMCLVEMEKSPKPIASCAMPVGNGMVIHTDTPMVKKAREGVMEFLLVNHPLDCPICDQGGECDLQDQAFRYGKGTNRFHENKRSIKDKYMGPLIK 140          
BLAST of CX300812 vs. ExPASy Swiss-Prot
Match: NDUS1_ACACA (NADH-ubiquinone oxidoreductase 75 kDa subunit OS=Acanthamoeba castellanii GN=NAD11 PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 8.570e-40
Identity = 74/142 (52.11%), Postives = 100/142 (70.42%), Query Frame = 1
Query:   52 MKTINLTIDNILVEVSEKLSIIESCELAGVVVPRFCYHEILSVSGNCRMCVVEVDTIEKPVASCATEAKGGMDVYTNNAFVKKARENVVEFLLLNHPLDCPICDQAGECDLQDQVKAYGSSQARFFGLKKTKEDRLCNPFIK 477
            MK I+  +++    ++ KL++I++C    V + RFC+HE LS++GNCRMC+VE     KP+ASCA      M++YTN   VKKARE+V+EFLL NHPLDCPICDQ GECDLQDQ   +GS + RF+  K++ ED+ C P IK
Sbjct:    1 MKNISFKVNDFQYTINNKLTLIQACLKNKVDISRFCFHEKLSIAGNCRMCLVEDLKQVKPLASCAINVSNSMNIYTNTLKVKKARESVLEFLLANHPLDCPICDQGGECDLQDQSVVFGSDRGRFYEFKRSVEDKDCGPLIK 142          
BLAST of CX300812 vs. ExPASy Swiss-Prot
Match: NUOG_RICFE (NADH-quinone oxidoreductase subunit G OS=Rickettsia felis GN=nuoG PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 1.119e-39
Identity = 74/139 (53.24%), Postives = 95/139 (68.35%), Query Frame = 1
Query:   61 INLTIDNILVEVSEKLSIIESCELAGVVVPRFCYHEILSVSGNCRMCVVEVDTIEKPVASCATEAKGGMDVYTNNAFVKKARENVVEFLLLNHPLDCPICDQAGECDLQDQVKAYGSSQARFFGLKKTKEDRLCNPFIK 477
            I L ID   +EVSE  ++ ++C  AG  +P FCYHE L ++GNCRMC+VE++   KP+ASCA     GM ++T+   VKKARE V+EFLL+NHPLDCPICDQ GECDLQDQ   YG    RF   K++ +D+   P IK
Sbjct:    2 IKLNIDGSEIEVSEGSTVYQACTQAGKEIPHFCYHERLKIAGNCRMCLVEMEKSPKPIASCAMPVSNGMVIHTDTPMVKKAREGVMEFLLINHPLDCPICDQGGECDLQDQAFRYGKGTNRFHENKRSIKDKYMGPLIK 140          
BLAST of CX300812 vs. ExPASy Swiss-Prot
Match: NUOG_RICTY (NADH-quinone oxidoreductase subunit G OS=Rickettsia typhi GN=nuoG PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 1.909e-39
Identity = 73/139 (52.52%), Postives = 96/139 (69.06%), Query Frame = 1
Query:   61 INLTIDNILVEVSEKLSIIESCELAGVVVPRFCYHEILSVSGNCRMCVVEVDTIEKPVASCATEAKGGMDVYTNNAFVKKARENVVEFLLLNHPLDCPICDQAGECDLQDQVKAYGSSQARFFGLKKTKEDRLCNPFIK 477
            I L ID   +E+SE  ++ ++C  AG  +P FCYH  L ++GNCRMC+VE++  +KPVASCA     GM ++T+ + VKKARE V+EFLL+NHPLDCPICDQ GECDLQDQ   YG    RF   K++ +D+   P IK
Sbjct:    2 IKLIIDGSEIEISEGSTVYQACIQAGKQIPHFCYHARLKIAGNCRMCLVEIEKSQKPVASCAMPVSNGMVIHTDTSMVKKAREGVMEFLLINHPLDCPICDQGGECDLQDQAFRYGKGTNRFHENKRSIKDKYMGPLIK 140          
BLAST of CX300812 vs. ExPASy Swiss-Prot
Match: NUOG_RICPR (NADH-quinone oxidoreductase subunit G OS=Rickettsia prowazekii GN=nuoG PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 5.555e-39
Identity = 73/139 (52.52%), Postives = 95/139 (68.35%), Query Frame = 1
Query:   61 INLTIDNILVEVSEKLSIIESCELAGVVVPRFCYHEILSVSGNCRMCVVEVDTIEKPVASCATEAKGGMDVYTNNAFVKKARENVVEFLLLNHPLDCPICDQAGECDLQDQVKAYGSSQARFFGLKKTKEDRLCNPFIK 477
            I L ID   +E+SE  ++ ++C  AG  +P FCYH  L ++GNCRMC+VE++  +KPVASCA     GM ++T+   VKKARE V+EFLL+NHPLDCPICDQ GECDLQDQ   YG    RF   K++ +D+   P IK
Sbjct:    2 IKLIIDGSEIEISEGSTVYQACIQAGKEIPHFCYHARLKIAGNCRMCLVEIEKSQKPVASCAMPVSKGMVIHTDTPMVKKAREGVMEFLLINHPLDCPICDQGGECDLQDQAFRYGKGTNRFHENKRSIKDKYMGPLIK 140          
BLAST of CX300812 vs. ExPASy Swiss-Prot
Match: NUOG_RICCN (NADH-quinone oxidoreductase subunit G OS=Rickettsia conorii GN=nuoG PE=3 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 1.238e-38
Identity = 71/139 (51.08%), Postives = 95/139 (68.35%), Query Frame = 1
Query:   61 INLTIDNILVEVSEKLSIIESCELAGVVVPRFCYHEILSVSGNCRMCVVEVDTIEKPVASCATEAKGGMDVYTNNAFVKKARENVVEFLLLNHPLDCPICDQAGECDLQDQVKAYGSSQARFFGLKKTKEDRLCNPFIK 477
            I L +D   +EVSE  ++ ++C  AG  +P FCYH+ L ++GNCRMC+VE++   KP+ASCA     GM ++T+   VKKARE V+EFLL+NHPLDCPICDQ GEC+LQDQ   YG    RF   K++ +D+   P IK
Sbjct:    2 IKLNVDGSEIEVSEGSTVYQACTQAGKEIPHFCYHQRLKIAGNCRMCLVEMEKSPKPIASCAMPVSNGMVIHTDTPMVKKAREGVMEFLLINHPLDCPICDQGGECNLQDQAFRYGKGTNRFHENKRSIKDKYMGPLIK 140          
The following BLAST results are available for this feature:
BLAST of CX300812 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
NDUS1_RECAM5.368e-4253.96NADH-ubiquinone oxidoreductase 75 kDa subunit OS=R... [more]
NDUS1_SOLTU2.664e-4153.24NADH-ubiquinone oxidoreductase 75 kDa subunit, mit... [more]
NDUS1_ARATH2.664e-4153.96NADH-ubiquinone oxidoreductase 75 kDa subunit, mit... [more]
NDUS1_NEUCR2.945e-4055.32NADH-ubiquinone oxidoreductase 78 kDa subunit, mit... [more]
NUOG_RICBR6.562e-4053.96NADH-quinone oxidoreductase subunit G OS=Rickettsi... [more]
NDUS1_ACACA8.570e-4052.11NADH-ubiquinone oxidoreductase 75 kDa subunit OS=A... [more]
NUOG_RICFE1.119e-3953.24NADH-quinone oxidoreductase subunit G OS=Rickettsi... [more]
NUOG_RICTY1.909e-3952.52NADH-quinone oxidoreductase subunit G OS=Rickettsi... [more]
NUOG_RICPR5.555e-3952.52NADH-quinone oxidoreductase subunit G OS=Rickettsi... [more]
NUOG_RICCN1.238e-3851.08NADH-quinone oxidoreductase subunit G OS=Rickettsi... [more]

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Properties
Property NameValue
Genbank descriptionC08002E05SK PhyRootSw1 Citrus sinensis cDNA clone C08002E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300812 ID=CX300812; Name=CX300812; organism=Citrus sinensis; type=EST; length=477bp
TTCGGCACGAGGGTAAATGTCGTTATGACATGGAAATGTTTTACATTAAT
AATGAAAACAATAAACTTAACAATAGATAATATTCTTGTAGAGGTATCAG
AAAAATTATCGATTATTGAATCTTGTGAGTTAGCAGGTGTTGTAGTACCA
AGATTTTGTTATCATGAAATTTTGAGTGTTTCAGGTAACTGTCGTATGTG
TGTTGTAGAAGTAGACACTATTGAAAAACCAGTAGCATCTTGTGCAACTG
AAGCAAAAGGTGGTATGGATGTATACACAAACAATGCCTTTGTAAAAAAA
GCAAGAGAAAATGTTGTTGAATTTTTACTATTGAATCATCCACTAGATTG
TCCAATTTGTGATCAGGCAGGAGAATGTGATTTACAAGACCAAGTGAAAG
CTTATGGATCTTCACAAGCAAGATTTTTTGGCTTAAAAAAGACCAAAGAA
GATAGATTATGCAATCCTTTTATTAAA
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