CX300811

Overview
NameCX300811
Unique NameCX300811
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length423
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300811 vs. ExPASy Swiss-Prot
Match: YHDF_BACSU (Uncharacterized oxidoreductase yhdF OS=Bacillus subtilis GN=yhdF PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.764e-26
Identity = 60/100 (60.00%), Postives = 72/100 (72.00%), Query Frame = 1
Query:   31 EGHKELLDYASTKGAIHSFTKSLAKQLVDKKIRVNCVSPGPIWTPLIVSDKEAENAGEHGKKTPMNRPGQPEEVAPAYVFFASDADSSYITGEIMTLLGG 330
            EG   L+DY+STKGAI SFT+S+AK L DK IRVN V+PGPIWTPLI +    E   +HG  TPM RPGQP E A AYV  ASD +SSY+TG+ + + GG
Sbjct:  186 EGDTALIDYSSTKGAIVSFTRSMAKSLADKGIRVNAVAPGPIWTPLIPATFPEEKVKQHGLDTPMGRPGQPVEHAGAYVLLASD-ESSYMTGQTIHVNGG 284          
BLAST of CX300811 vs. ExPASy Swiss-Prot
Match: YHXC_BACSU (Uncharacterized oxidoreductase yhxC OS=Bacillus subtilis GN=yhxC PE=3 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 5.435e-25
Identity = 54/100 (54.00%), Postives = 76/100 (76.00%), Query Frame = 1
Query:   31 EGHKELLDYASTKGAIHSFTKSLAKQLVDKKIRVNCVSPGPIWTPLIVSDKEAENAGEHGKKTPMNRPGQPEEVAPAYVFFASDADSSYITGEIMTLLGG 330
            +G+K L+DY++TKGAI +FT+SL++ LV + IRVN V+PGPIWTPLI +   A++    G   PM RPGQP EVAP+Y++ ASD DS+Y+TG+ + + GG
Sbjct:  182 KGNKTLIDYSATKGAIVTFTRSLSQSLVQQGIRVNAVAPGPIWTPLIPASFAAKDVEVFGSDVPMERPGQPVEVAPSYLYLASD-DSTYVTGQTIHVNGG 280          
BLAST of CX300811 vs. ExPASy Swiss-Prot
Match: GRDH_ORYSJ (Glucose and ribitol dehydrogenase homolog OS=Oryza sativa subsp. japonica GN=Os05g0140800 PE=2 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 7.099e-25
Identity = 55/110 (50.00%), Postives = 79/110 (71.82%), Query Frame = 1
Query:    1 LVPNSARGGLEGHKELLDYASTKGAIHSFTKSLAKQLVDKKIRVNCVSPGPIWTPLIVSDKEAENAGEHGKKTPMNRPGQPEEVAPAYVFFASDADSSYITGEIMTLLGG 330
            ++  S+    +G+K LLDY +TKGAI +FT++LA QL ++ IRVN V+PGPIWTPLI +    E   + G + PM R GQP EVAP++VF ASD D+SY++G+++ + GG
Sbjct:  187 IINTSSINAYKGNKTLLDYTATKGAIVAFTRALALQLAEEGIRVNGVAPGPIWTPLIPASFAEEKVRQFGSQVPMGRAGQPSEVAPSFVFLASD-DASYMSGQMLHVNGG 295          
BLAST of CX300811 vs. ExPASy Swiss-Prot
Match: GRDH1_ARATH (Glucose and ribitol dehydrogenase homolog 1 OS=Arabidopsis thaliana GN=At1g54870 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.339e-23
Identity = 54/110 (49.09%), Postives = 72/110 (65.45%), Query Frame = 1
Query:    1 LVPNSARGGLEGHKELLDYASTKGAIHSFTKSLAKQLVDKKIRVNCVSPGPIWTPLIVSDKEAENAGEHGKKTPMNRPGQPEEVAPAYVFFASDADSSYITGEIMTLLGG 330
            ++  ++    +G+  LLDY +TKGAI +FT+ LA QL +K IRVN V+PGPIWTPLI +    E     G + PM R GQP EVAP+YVF A +  SSY TG+++   GG
Sbjct:  174 IINTTSVNAYKGNASLLDYTATKGAIVAFTRGLALQLAEKGIRVNGVAPGPIWTPLIPASFNEEKIKNFGSEVPMKRAGQPIEVAPSYVFLACNHCSSYFTGQVLHPNGG 283          
BLAST of CX300811 vs. ExPASy Swiss-Prot
Match: GRDH_DAUCA (Glucose and ribitol dehydrogenase OS=Daucus carota GN=CAISE5 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.748e-23
Identity = 53/110 (48.18%), Postives = 75/110 (68.18%), Query Frame = 1
Query:    1 LVPNSARGGLEGHKELLDYASTKGAIHSFTKSLAKQLVDKKIRVNCVSPGPIWTPLIVSDKEAENAGEHGKKTPMNRPGQPEEVAPAYVFFASDADSSYITGEIMTLLGG 330
            ++  ++    +G+ +LLDY +TKGAI +FT+ L+ QL+ K IRVN V+PGP+WTPLI S  + E   + G + PM R GQP E+A AYVF AS  DSSY +G+++   GG
Sbjct:  178 IINTTSINAYKGNAKLLDYTATKGAIVAFTRGLSLQLISKGIRVNGVAPGPVWTPLIPSSFDEEEVKQFGSEVPMKRAGQPYEIATAYVFLAS-CDSSYYSGQVLHPNGG 286          
BLAST of CX300811 vs. ExPASy Swiss-Prot
Match: GRDH2_ARATH (Glucose and ribitol dehydrogenase homolog 2 OS=Arabidopsis thaliana GN=At3g05260 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.644e-23
Identity = 54/99 (54.55%), Postives = 67/99 (67.68%), Query Frame = 1
Query:   34 GHKELLDYASTKGAIHSFTKSLAKQLVDKKIRVNCVSPGPIWTPLIVSDKEAENAGEHGKKTPMNRPGQPEEVAPAYVFFASDADSSYITGEIMTLLGG 330
            G+  LL+Y +TKGAI SFT+ LA QL  K IRVN V+PGP+WTPLI +    E   + G +TPM R  QP EVAP+YVF A +  SSY TG+I+   GG
Sbjct:  186 GNSSLLEYTATKGAIVSFTRGLALQLAPKGIRVNGVAPGPVWTPLIPASFSEEAIKQFGSETPMKRAAQPVEVAPSYVFLACNHCSSYYTGQILHPNGG 284          
BLAST of CX300811 vs. ExPASy Swiss-Prot
Match: GS39_BACSU (General stress protein 39 OS=Bacillus subtilis GN=ydaD PE=1 SV=3)

HSP 1 Score: 103.605 bits (257), Expect = 3.297e-22
Identity = 51/99 (51.52%), Postives = 69/99 (69.70%), Query Frame = 1
Query:   34 GHKELLDYASTKGAIHSFTKSLAKQLVDKKIRVNCVSPGPIWTPLIVSDKEAENAGEHGKKTPMNRPGQPEEVAPAYVFFASDADSSYITGEIMTLLGG 330
            G+  L+DY +TKGAI++FT+++A+ LV   IRVN V+PGPIWTPLI +    E   + G+ TPM RPGQP E    YV  ASD +SSY+TG+ + + GG
Sbjct:  184 GNPTLIDYTATKGAINAFTRTMAQALVKDGIRVNAVAPGPIWTPLIPATFPEETVAQFGQDTPMGRPGQPVEHVGCYVLLASD-ESSYMTGQTLHVNGG 281          
BLAST of CX300811 vs. ExPASy Swiss-Prot
Match: YGHA_ECOLI (Uncharacterized oxidoreductase yghA OS=Escherichia coli (strain K12) GN=yghA PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.137e-21
Identity = 51/112 (45.54%), Postives = 76/112 (67.86%), Query Frame = 1
Query:    1 LVPNSARGGLEGHKELLDYASTKGAIHSFTKSLAKQLVDKKIRVNCVSPGPIWTPLIVSDKEAEN-AGEHGKKTPMNRPGQPEEVAPAYVFFASDADSSYITGEIMTLLGGE 333
            ++  S+    +    LLDYA+TK AI ++++ LAKQ+ +K IRVN V+PGPIWT L +S  + ++   + G++TPM R GQP E+AP YV+ AS  +SSY+T E+  + GGE
Sbjct:  181 IITTSSIQAYQPSPHLLDYAATKAAILNYSRGLAKQVAEKGIRVNIVAPGPIWTALQISGGQTQDKIPQFGQQTPMKRAGQPAELAPVYVYLASQ-ESSYVTAEVHGVCGGE 291          
BLAST of CX300811 vs. ExPASy Swiss-Prot
Match: YGHA_ECO57 (Uncharacterized oxidoreductase yghA OS=Escherichia coli O157:H7 GN=yghA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.137e-21
Identity = 51/112 (45.54%), Postives = 76/112 (67.86%), Query Frame = 1
Query:    1 LVPNSARGGLEGHKELLDYASTKGAIHSFTKSLAKQLVDKKIRVNCVSPGPIWTPLIVSDKEAEN-AGEHGKKTPMNRPGQPEEVAPAYVFFASDADSSYITGEIMTLLGGE 333
            ++  S+    +    LLDYA+TK AI ++++ LAKQ+ +K IRVN V+PGPIWT L +S  + ++   + G++TPM R GQP E+AP YV+ AS  +SSY+T E+  + GGE
Sbjct:  181 IITTSSIQAYQPSPHLLDYAATKAAILNYSRGLAKQVAEKGIRVNIVAPGPIWTALQISGGQTQDKIPQFGQQTPMKRAGQPAELAPVYVYLASQ-ESSYVTAEVHGVCGGE 291          
BLAST of CX300811 vs. ExPASy Swiss-Prot
Match: YHXD_BACSU (Uncharacterized oxidoreductase yhxD OS=Bacillus subtilis GN=yhxD PE=3 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 5.264e-20
Identity = 53/99 (53.54%), Postives = 67/99 (67.68%), Query Frame = 1
Query:   46 LLDYASTKGAIHSFTKSLAKQLVDKKIRVNCVSPGPIWTPLIVS-DKEAENAGEHGKKT---PMNRPGQPEEVAPAYVFFASDADSSYITGEIMTLLGG 330
            LLDYA+TK AI  FT  L KQL  K IRVN V+PGPIWTPL +S  +  EN  + G+ T   P+NR GQP E+A  YVF AS+ +SSY+T ++  + GG
Sbjct:  198 LLDYAATKNAIIGFTVGLGKQLASKGIRVNSVAPGPIWTPLQISGGQPTENIPKFGQGTPPAPLNRAGQPVELADVYVFLASE-NSSYVTSQVYGITGG 295          
The following BLAST results are available for this feature:
BLAST of CX300811 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
YHDF_BACSU3.764e-2660.00Uncharacterized oxidoreductase yhdF OS=Bacillus su... [more]
YHXC_BACSU5.435e-2554.00Uncharacterized oxidoreductase yhxC OS=Bacillus su... [more]
GRDH_ORYSJ7.099e-2550.00Glucose and ribitol dehydrogenase homolog OS=Oryza... [more]
GRDH1_ARATH1.339e-2349.09Glucose and ribitol dehydrogenase homolog 1 OS=Ara... [more]
GRDH_DAUCA1.748e-2348.18Glucose and ribitol dehydrogenase OS=Daucus carota... [more]
GRDH2_ARATH6.644e-2354.55Glucose and ribitol dehydrogenase homolog 2 OS=Ara... [more]
GS39_BACSU3.297e-2251.52General stress protein 39 OS=Bacillus subtilis GN=... [more]
YGHA_ECOLI2.137e-2145.54Uncharacterized oxidoreductase yghA OS=Escherichia... [more]
YGHA_ECO572.137e-2145.54Uncharacterized oxidoreductase yghA OS=Escherichia... [more]
YHXD_BACSU5.264e-2053.54Uncharacterized oxidoreductase yhxD OS=Bacillus su... [more]

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Properties
Property NameValue
Genbank descriptionC08002E04SK PhyRootSw1 Citrus sinensis cDNA clone C08002E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300811 ID=CX300811; Name=CX300811; organism=Citrus sinensis; type=EST; length=423bp
CTCGTGCCGAATTCGGCACGAGGGGGATTAGAAGGACACAAAGAACTGCT
CGACTACGCCTCCACCAAGGGAGCAATCCATTCATTCACCAAGTCATTGG
CCAAACAGTTGGTGGATAAGAAGATCCGAGTGAACTGCGTATCTCCGGGA
CCTATTTGGACTCCACTTATCGTGTCAGATAAGGAAGCAGAAAACGCCGG
TGAGCACGGTAAGAAAACTCCAATGAATCGCCCCGGCCAACCCGAGGAGG
TCGCTCCCGCTTACGTCTTTTTTGCGTCTGACGCTGACTCTTCTTATATT
ACTGGTGAAATCATGACTCTTCTTGGTGGAGAAACTCGCGCTGTTTAAAT
TGATAATTGTACTATTCCTTTTACATAAATGATGTTCGGGAATAATATAT
TTTACTTCACTTTTAAAAAAAAA
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