CX300803

Overview
NameCX300803
Unique NameCX300803
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length438
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5006 contig Csv1_Contig5006:372..809. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX300803 vs. ExPASy Swiss-Prot
Match: RS5_CICAR (40S ribosomal protein S5 (Fragment) OS=Cicer arietinum GN=RPS5 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 4.061e-26
Identity = 57/64 (89.06%), Postives = 63/64 (98.44%), Query Frame = 3 
Query:   24 VSPFRRVNQAIYLMTTGAREASFRNIKTIAECLADEVINAARGSSNSYAIKKKDEIERVAKANR 215
            +SP RRVNQAIYL+TTGAREA+FRNIK+IAECLADE+INAA+GSSNSYAIKKKDEIERVAKANR
Sbjct:  134 ISPLRRVNQAIYLLTTGAREAAFRNIKSIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 197
[Close]
BLAST of CX300803 vs. ExPASy Swiss-Prot
Match: RS51_ARATH (40S ribosomal protein S5-1 OS=Arabidopsis thaliana GN=RPS5A PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 4.061e-26
Identity = 57/64 (89.06%), Postives = 63/64 (98.44%), Query Frame = 3 
Query:   24 VSPFRRVNQAIYLMTTGAREASFRNIKTIAECLADEVINAARGSSNSYAIKKKDEIERVAKANR 215
            +SP RRVNQAI+L+TTGAREA+FRNIKTIAECLADE+INAA+GSSNSYAIKKKDEIERVAKANR
Sbjct:  144 ISPLRRVNQAIFLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 207
[Close]
BLAST of CX300803 vs. ExPASy Swiss-Prot
Match: RS52_ARATH (40S ribosomal protein S5-2 OS=Arabidopsis thaliana GN=RPS5B PE=1 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 5.304e-26
Identity = 57/64 (89.06%), Postives = 63/64 (98.44%), Query Frame = 3 
Query:   24 VSPFRRVNQAIYLMTTGAREASFRNIKTIAECLADEVINAARGSSNSYAIKKKDEIERVAKANR 215
            +SP RRVNQAI+L+TTGAREA+FRNIKTIAECLADE+INAA+GSSNSYAIKKKDEIERVAKANR
Sbjct:  144 ISPLRRVNQAIFLITTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 207
[Close]
BLAST of CX300803 vs. ExPASy Swiss-Prot
Match: RS5_NICPL (40S ribosomal protein S5 (Fragment) OS=Nicotiana plumbaginifolia GN=RPS5 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.182e-25
Identity = 56/64 (87.50%), Postives = 63/64 (98.44%), Query Frame = 3 
Query:   24 VSPFRRVNQAIYLMTTGAREASFRNIKTIAECLADEVINAARGSSNSYAIKKKDEIERVAKANR 215
            +SP RRV+QAIYL+TTGARE++FRNIKTIAECLADE+INAA+GSSNSYAIKKKDEIERVAKANR
Sbjct:   91 ISPLRRVSQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 154
[Close]
BLAST of CX300803 vs. ExPASy Swiss-Prot
Match: RS5_HUMAN (40S ribosomal protein S5 OS=Homo sapiens GN=RPS5 PE=1 SV=4)

HSP 1 Score: 112.464 bits (280), Expect = 7.659e-25
Identity = 55/64 (85.94%), Postives = 62/64 (96.88%), Query Frame = 3 
Query:   24 VSPFRRVNQAIYLMTTGAREASFRNIKTIAECLADEVINAARGSSNSYAIKKKDEIERVAKANR 215
            VSP RRVNQAI+L+ TGAREA+FRNIKTIAECLADE+INAA+GSSNSYAIKKKDE+ERVAK+NR
Sbjct:  141 VSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 204
[Close]
BLAST of CX300803 vs. ExPASy Swiss-Prot
Match: RS5_BOVIN (40S ribosomal protein S5 OS=Bos taurus GN=RPS5 PE=2 SV=3)

HSP 1 Score: 112.464 bits (280), Expect = 7.659e-25
Identity = 55/64 (85.94%), Postives = 62/64 (96.88%), Query Frame = 3 
Query:   24 VSPFRRVNQAIYLMTTGAREASFRNIKTIAECLADEVINAARGSSNSYAIKKKDEIERVAKANR 215
            VSP RRVNQAI+L+ TGAREA+FRNIKTIAECLADE+INAA+GSSNSYAIKKKDE+ERVAK+NR
Sbjct:  141 VSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 204
[Close]
BLAST of CX300803 vs. ExPASy Swiss-Prot
Match: RS5A_DROME (40S ribosomal protein S5a OS=Drosophila melanogaster GN=RpS5a PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 7.659e-25
Identity = 55/64 (85.94%), Postives = 62/64 (96.88%), Query Frame = 3 
Query:   24 VSPFRRVNQAIYLMTTGAREASFRNIKTIAECLADEVINAARGSSNSYAIKKKDEIERVAKANR 215
            VSP RRVNQAI+L+ TGAREA+FRNIKTIAECLADE+INAA+GSSNSYAIKKKDE+ERVAK+NR
Sbjct:  165 VSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 228
[Close]
BLAST of CX300803 vs. ExPASy Swiss-Prot
Match: RS5_PODCA (40S ribosomal protein S5 OS=Podocoryne carnea GN=RPS5 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.000e-24
Identity = 55/64 (85.94%), Postives = 62/64 (96.88%), Query Frame = 3 
Query:   24 VSPFRRVNQAIYLMTTGAREASFRNIKTIAECLADEVINAARGSSNSYAIKKKDEIERVAKANR 215
            V+P RRVNQAI+L+ TGAREASFRNIK+IAECLADE+INAARGSSNSYAIKKKDE+ERVAK+NR
Sbjct:  147 VAPLRRVNQAIWLLCTGAREASFRNIKSIAECLADELINAARGSSNSYAIKKKDELERVAKSNR 210
[Close]
BLAST of CX300803 vs. ExPASy Swiss-Prot
Match: RS5B_DROME (40S ribosomal protein S5b OS=Drosophila melanogaster GN=RpS5b PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.306e-24
Identity = 54/64 (84.38%), Postives = 62/64 (96.88%), Query Frame = 3 
Query:   24 VSPFRRVNQAIYLMTTGAREASFRNIKTIAECLADEVINAARGSSNSYAIKKKDEIERVAKANR 215
            VSP RRVNQAI+L+ TGAREA+FRNIKT+AECLADE+INAA+GSSNSYAIKKKDE+ERVAK+NR
Sbjct:  167 VSPLRRVNQAIWLICTGAREAAFRNIKTVAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 230
[Close]
BLAST of CX300803 vs. ExPASy Swiss-Prot
Match: RS5_NEUCR (40S ribosomal protein S5 OS=Neurospora crassa GN=rps-5 PE=3 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 2.228e-24
Identity = 54/64 (84.38%), Postives = 62/64 (96.88%), Query Frame = 3 
Query:   24 VSPFRRVNQAIYLMTTGAREASFRNIKTIAECLADEVINAARGSSNSYAIKKKDEIERVAKANR 215
            VSP RRVNQAI L+TTGAREASFRN+K+IAECLA+E+INAA+GSSNSYAIKKKDE+ERVAK+NR
Sbjct:  150 VSPLRRVNQAIALLTTGAREASFRNVKSIAECLAEELINAAKGSSNSYAIKKKDELERVAKSNR 213
The following BLAST results are available for this feature:
BLAST of CX300803 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
RS5_CICAR4.061e-2689.0640S ribosomal protein S5 (Fragment) OS=Cicer ariet... [more]
RS51_ARATH4.061e-2689.0640S ribosomal protein S5-1 OS=Arabidopsis thaliana... [more]
RS52_ARATH5.304e-2689.0640S ribosomal protein S5-2 OS=Arabidopsis thaliana... [more]
RS5_NICPL1.182e-2587.5040S ribosomal protein S5 (Fragment) OS=Nicotiana p... [more]
RS5_HUMAN7.659e-2585.9440S ribosomal protein S5 OS=Homo sapiens GN=RPS5 P... [more]
RS5_BOVIN7.659e-2585.9440S ribosomal protein S5 OS=Bos taurus GN=RPS5 PE=... [more]
RS5A_DROME7.659e-2585.9440S ribosomal protein S5a OS=Drosophila melanogast... [more]
RS5_PODCA1.000e-2485.9440S ribosomal protein S5 OS=Podocoryne carnea GN=R... [more]
RS5B_DROME1.306e-2484.3840S ribosomal protein S5b OS=Drosophila melanogast... [more]
RS5_NEUCR2.228e-2484.3840S ribosomal protein S5 OS=Neurospora crassa GN=r... [more]

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Properties
Property NameValue
Genbank descriptionC08002D08SK PhyRootSw1 Citrus sinensis cDNA clone C08002D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300803 ID=CX300803; Name=CX300803; organism=Citrus sinensis; type=EST; length=438bp
CTCGTGCCGAATTCGGCACGAGGGTCTCTCCTTTCCGAAGAGTCAACCAA
GCCATCTACTTAATGACCACCGGCGCTCGTGAAGCTTCTTTCCGCAACAT
CAAGACTATTGCTGAATGCCTTGCTGATGAAGTCATCAACGCTGCCCGTG
GATCATCTAACAGCTATGCTATCAAGAAGAAGGATGAAATCGAACGTGTT
GCTAAGGCTAACCGTTAAGCGCTCCTCATCACTCTGCGCTGTAGCCCTCC
TCCTTACCGCTTCTTTCCCTTTCTACCTGCTCTCGGAAGATTGTATGCTT
TCTTATTATTATCGATGATTTGATGATAGAAGCTTACTTTTTTCTTGATC
GTAGCGGATTTTCAGTATATACATATGAATTCCCCCTTGTACTACTACCA
ACCTTTCTGTTTGGATCAAAAGTAATTAATATCATATC
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