CX300796

Overview
NameCX300796
Unique NameCX300796
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length441
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX300796_ssr233 microsatellite CX300796_ssr233:233..242. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2486 contig Csv1_Contig2486:356..796. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300796 vs. ExPASy Swiss-Prot
Match: PDC2_PEA (Pyruvate decarboxylase isozyme 2 (Fragment) OS=Pisum sativum GN=PDC2 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 3.391e-15
Identity = 37/38 (97.37%), Postives = 37/38 (97.37%), Query Frame = 1
Query:   25 KDSLCFIEVFVHKDDTSKELLEWGSRVSAANSRPPNPQ 138
            KDSLCFIEV VHKDDTSKELLEWGSRVSAANSRPPNPQ
Sbjct:  368 KDSLCFIEVIVHKDDTSKELLEWGSRVSAANSRPPNPQ 405          
BLAST of CX300796 vs. ExPASy Swiss-Prot
Match: PDC1_PEA (Pyruvate decarboxylase isozyme 1 OS=Pisum sativum GN=PDC1 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 4.428e-15
Identity = 36/38 (94.74%), Postives = 37/38 (97.37%), Query Frame = 1
Query:   25 KDSLCFIEVFVHKDDTSKELLEWGSRVSAANSRPPNPQ 138
            KDSLCFIEVF HKDDTSKELLEWGSRV+AANSRPPNPQ
Sbjct:  556 KDSLCFIEVFAHKDDTSKELLEWGSRVAAANSRPPNPQ 593          
BLAST of CX300796 vs. ExPASy Swiss-Prot
Match: PDC2_MAIZE (Pyruvate decarboxylase isozyme 2 (Fragment) OS=Zea mays GN=PDC2 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.288e-14
Identity = 36/38 (94.74%), Postives = 36/38 (94.74%), Query Frame = 1
Query:   25 KDSLCFIEVFVHKDDTSKELLEWGSRVSAANSRPPNPQ 138
            KD LCFIEV VHKDDTSKELLEWGSRVSAANSRPPNPQ
Sbjct:   69 KDCLCFIEVIVHKDDTSKELLEWGSRVSAANSRPPNPQ 106          
BLAST of CX300796 vs. ExPASy Swiss-Prot
Match: PDC1_MAIZE (Pyruvate decarboxylase isozyme 1 OS=Zea mays GN=PDC1 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.288e-14
Identity = 36/38 (94.74%), Postives = 36/38 (94.74%), Query Frame = 1
Query:   25 KDSLCFIEVFVHKDDTSKELLEWGSRVSAANSRPPNPQ 138
            KD LCFIEV VHKDDTSKELLEWGSRVSAANSRPPNPQ
Sbjct:  573 KDCLCFIEVIVHKDDTSKELLEWGSRVSAANSRPPNPQ 610          
BLAST of CX300796 vs. ExPASy Swiss-Prot
Match: PDC1_ORYSJ (Pyruvate decarboxylase isozyme 1 OS=Oryza sativa subsp. japonica GN=PDC1 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.683e-14
Identity = 35/38 (92.11%), Postives = 36/38 (94.74%), Query Frame = 1
Query:   25 KDSLCFIEVFVHKDDTSKELLEWGSRVSAANSRPPNPQ 138
            KD LCFIE+ VHKDDTSKELLEWGSRVSAANSRPPNPQ
Sbjct:  568 KDCLCFIEIIVHKDDTSKELLEWGSRVSAANSRPPNPQ 605          
BLAST of CX300796 vs. ExPASy Swiss-Prot
Match: PDC1_ORYSI (Pyruvate decarboxylase isozyme 1 OS=Oryza sativa subsp. indica GN=PDC1 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.683e-14
Identity = 35/38 (92.11%), Postives = 36/38 (94.74%), Query Frame = 1
Query:   25 KDSLCFIEVFVHKDDTSKELLEWGSRVSAANSRPPNPQ 138
            KD LCFIE+ VHKDDTSKELLEWGSRVSAANSRPPNPQ
Sbjct:  568 KDCLCFIEIIVHKDDTSKELLEWGSRVSAANSRPPNPQ 605          
BLAST of CX300796 vs. ExPASy Swiss-Prot
Match: PDC3_MAIZE (Pyruvate decarboxylase isozyme 3 (Fragment) OS=Zea mays GN=PDC3 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.749e-14
Identity = 35/38 (92.11%), Postives = 35/38 (92.11%), Query Frame = 1
Query:   25 KDSLCFIEVFVHKDDTSKELLEWGSRVSAANSRPPNPQ 138
            KD LCFIEV  HKDDTSKELLEWGSRVSAANSRPPNPQ
Sbjct:  165 KDCLCFIEVIAHKDDTSKELLEWGSRVSAANSRPPNPQ 202          
BLAST of CX300796 vs. ExPASy Swiss-Prot
Match: PDC2_ORYSJ (Pyruvate decarboxylase isozyme 2 OS=Oryza sativa subsp. japonica GN=PDC2 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.749e-14
Identity = 35/38 (92.11%), Postives = 35/38 (92.11%), Query Frame = 1
Query:   25 KDSLCFIEVFVHKDDTSKELLEWGSRVSAANSRPPNPQ 138
            KD LCFIEV  HKDDTSKELLEWGSRVSAANSRPPNPQ
Sbjct:  568 KDCLCFIEVIAHKDDTSKELLEWGSRVSAANSRPPNPQ 605          
BLAST of CX300796 vs. ExPASy Swiss-Prot
Match: PDC2_ORYSI (Pyruvate decarboxylase isozyme 2 OS=Oryza sativa subsp. indica GN=PDC2 PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 3.749e-14
Identity = 35/38 (92.11%), Postives = 35/38 (92.11%), Query Frame = 1
Query:   25 KDSLCFIEVFVHKDDTSKELLEWGSRVSAANSRPPNPQ 138
            KD LCFIEV  HKDDTSKELLEWGSRVSAANSRPPNPQ
Sbjct:  569 KDCLCFIEVIAHKDDTSKELLEWGSRVSAANSRPPNPQ 606          
BLAST of CX300796 vs. ExPASy Swiss-Prot
Match: PDC3_ORYSJ (Pyruvate decarboxylase isozyme 3 OS=Oryza sativa subsp. japonica GN=PDC3 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.896e-14
Identity = 35/37 (94.59%), Postives = 35/37 (94.59%), Query Frame = 1
Query:   28 DSLCFIEVFVHKDDTSKELLEWGSRVSAANSRPPNPQ 138
            DSLCFIEV  HKDDTSKELLEWGSRVSAANSRPPNPQ
Sbjct:  551 DSLCFIEVVAHKDDTSKELLEWGSRVSAANSRPPNPQ 587          
The following BLAST results are available for this feature:
BLAST of CX300796 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
PDC2_PEA3.391e-1597.37Pyruvate decarboxylase isozyme 2 (Fragment) OS=Pis... [more]
PDC1_PEA4.428e-1594.74Pyruvate decarboxylase isozyme 1 OS=Pisum sativum ... [more]
PDC2_MAIZE1.288e-1494.74Pyruvate decarboxylase isozyme 2 (Fragment) OS=Zea... [more]
PDC1_MAIZE1.288e-1494.74Pyruvate decarboxylase isozyme 1 OS=Zea mays GN=PD... [more]
PDC1_ORYSJ1.683e-1492.11Pyruvate decarboxylase isozyme 1 OS=Oryza sativa s... [more]
PDC1_ORYSI1.683e-1492.11Pyruvate decarboxylase isozyme 1 OS=Oryza sativa s... [more]
PDC3_MAIZE3.749e-1492.11Pyruvate decarboxylase isozyme 3 (Fragment) OS=Zea... [more]
PDC2_ORYSJ3.749e-1492.11Pyruvate decarboxylase isozyme 2 OS=Oryza sativa s... [more]
PDC2_ORYSI3.749e-1492.11Pyruvate decarboxylase isozyme 2 OS=Oryza sativa s... [more]
PDC3_ORYSJ4.896e-1494.59Pyruvate decarboxylase isozyme 3 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionC08002D01SK PhyRootSw1 Citrus sinensis cDNA clone C08002D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300796 ID=CX300796; Name=CX300796; organism=Citrus sinensis; type=EST; length=441bp
CTCGTGCCGAATTCGGCACGAGGAAAAGATTCTCTATGTTTTATCGAAGT
ATTTGTGCACAAGGATGACACCAGCAAAGAGCTGCTGGAGTGGGGATCCA
GGGTTTCTGCAGCCAACAGCCGCCCTCCAAATCCTCAATAGCACTTTGAA
GTGTTGAGGATTTTGAGTTTCTGTTATTTCAACTGCAGTATTCTTGGCCT
ATATCCTAAAACATGTATCAAAGCTAGAAATAAGAGAGAGAGGATTGTTT
GATTTAGATGGTTTCCCACCTATCTGTTGGCAGCGATCTGGTTTCTGTTG
TGATTATGCATTTGTTGTTATCTGTTGTGATTATGCATTTGTTGTTATGT
ACATTGTACAATGGCAGAGATATTATAACTGACGAACGTTGATGAAACAA
GCTTGTTGTCTATAATTGAACATGAAGTTTATAAATAAAGT
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