CX300793

Overview
NameCX300793
Unique NameCX300793
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length428
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX300793 vs. ExPASy Swiss-Prot
Match: RSPH1_MOUSE (Radial spoke head 1 homolog OS=Mus musculus GN=Rsph1 PE=1 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 5.996e-11
Identity = 25/56 (44.64%), Postives = 41/56 (73.21%), Query Frame = 1 
Query:    1 RYTSGAIYSGEWVKGKQEGKGLYEFPDGSKYEGEWKDQKMHGDGVFTDLNGNKWEG 168
            ++ +GA Y+G++VK K+ G+G + +PDGS+YEGEW D + HG GV+  +N + + G
Sbjct:   60 KFKNGARYTGDYVKNKKHGQGTFIYPDGSRYEGEWADDQRHGQGVYYYVNNDTYTG 115
[Close]
BLAST of CX300793 vs. ExPASy Swiss-Prot
Match: PI5K4_ARATH (Phosphatidylinositol-4-phosphate 5-kinase 4 OS=Arabidopsis thaliana GN=PIP5K4 PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.996e-11
Identity = 27/61 (44.26%), Postives = 41/61 (67.21%), Query Frame = 1 
Query:    1 RYTSGAIYSGEWVKGKQEGKGLYEFPDGSKYEGEWKDQKMHGDGVFTDLNGNKWEGIFVDG 183
            R+ +G +Y GEW +G QE +G Y++ DGS Y GEWK+  + G G F   +GN+++G + DG
Sbjct:  162 RFANGDVYDGEWRRGLQEAQGKYQWRDGSYYMGEWKNATICGKGTFIWTDGNRYDGFWDDG 222
The following BLAST results are available for this feature:
BLAST of CX300793 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
RSPH1_MOUSE5.996e-1144.64Radial spoke head 1 homolog OS=Mus musculus GN=Rsp... [more]
PI5K4_ARATH5.996e-1144.26Phosphatidylinositol-4-phosphate 5-kinase 4 OS=Ara... [more]
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Properties
Property NameValue
Genbank descriptionC08002C10SK PhyRootSw1 Citrus sinensis cDNA clone C08002C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300793 ID=CX300793; Name=CX300793; organism=Citrus sinensis; type=EST; length=428bp
AGATATACAAGTGGCGCTATTTATTCAGGTGAATGGGTTAAAGGAAAGCA
AGAAGGAAAGGGACTCTATGAATTTCCAGATGGCTCAAAGTATGAAGGTG
AATGGAAAGATCAGAAAATGCACGGTGATGGAGTGTTTACAGATTTGAAT
GGCAACAAATGGGAAGGCATTTTTGTGGATGGAGTATATCAATCTAAGAT
CCAGAAACAATTGAAGTATGAAAAACAACTCAGAATCCTCGAAGGACAAA
TCTTGGAAAGTGCAAAAGAATTCTTTAATAAATTCACAACCACATTTTCT
CAAAGTGACAAAAAGACTTTCAAGGAAAATCTGACTCCCTTCTTTGCTGT
TGTTGAAGACGTTAAAACTTATTTCAAGGATCCTTTCCCAAAATACGAAG
AAAGAGTTCCTGATAAATGGAATAGCGC
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