CX300787

Overview
NameCX300787
Unique NameCX300787
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length404
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300787 vs. ExPASy Swiss-Prot
Match: RL361_ARATH (60S ribosomal protein L36-1 OS=Arabidopsis thaliana GN=RPL36A PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.474e-22
Identity = 53/108 (49.07%), Postives = 73/108 (67.59%), Query Frame = 1
Query:   43 TNKMSTGIAVGLKKGFPVTKREKIARPSSHKGKISKRTKLVRELISEVVGLSPYEKRLLDMLKTGGASSEKRMYKYAKRRLGTHRRALKKRDQVKETYAKIRARAAMA 366
            T  + TG+ VGL KG  VT+RE   RP+S KGK SKRT  +R+LI EV G++PYEKR+ ++LK G    +KR  K AKR+LGTH+RA +KR+++     K+R+    A
Sbjct:    3 TPAVKTGLFVGLNKGHVVTRRELAPRPNSRKGKTSKRTIFIRKLIREVAGMAPYEKRITELLKVG---KDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSLGGAA 107          
BLAST of CX300787 vs. ExPASy Swiss-Prot
Match: RL363_ARATH (60S ribosomal protein L36-3 OS=Arabidopsis thaliana GN=RPL36C PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.514e-22
Identity = 53/105 (50.48%), Postives = 73/105 (69.52%), Query Frame = 1
Query:   52 MSTGIAVGLKKGFPVTKREKIARPSSHKGKISKRTKLVRELISEVVGLSPYEKRLLDMLKTGGASSEKRMYKYAKRRLGTHRRALKKRDQVKETYAKIRARAAMA 366
            ++TG+ VGL KG  VTKRE+  RP++ KGK SKRT  +R LI EV G +PYEKR+ ++LK G    +KR  K AKR+LGTH+RA +KR+++     K+R+  A A
Sbjct:    2 VATGLFVGLNKGHVVTKREQPPRPNNRKGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVG---KDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSGGAGA 103          
BLAST of CX300787 vs. ExPASy Swiss-Prot
Match: RL362_ARATH (60S ribosomal protein L36-2 OS=Arabidopsis thaliana GN=RPL36B PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.601e-22
Identity = 52/103 (50.49%), Postives = 70/103 (67.96%), Query Frame = 1
Query:   43 TNKMSTGIAVGLKKGFPVTKREKIARPSSHKGKISKRTKLVRELISEVVGLSPYEKRLLDMLKTGGASSEKRMYKYAKRRLGTHRRALKKRDQVKETYAKIRA 351
            T ++ TG+ VGL KG  VT+RE   RP S KGK SKRT  +R LI EV G +PYEKR+ ++LK G    +KR  K AKR+LGTH+RA +KR+++     K+R+
Sbjct:    3 TPQVKTGLFVGLNKGHVVTRRELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVG---KDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRS 102          
BLAST of CX300787 vs. ExPASy Swiss-Prot
Match: RL36_IXOSC (60S ribosomal protein L36 OS=Ixodes scapularis GN=RpL36 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.757e-18
Identity = 47/99 (47.47%), Postives = 63/99 (63.64%), Query Frame = 1
Query:   64 IAVGLKKGFPVTKREKIARPSSHKGKISKRTKLVRELISEVVGLSPYEKRLLDMLKTGGASSEKRMYKYAKRRLGTHRRALKKRDQVKETYAKIRARAA 360
            +AVGL KG  VTK E   RPS  KG +SK T+ VR+LI EV G +P+E+R +++LK    S +KR  K+ K+RLGTH R  +KRD++       R  AA
Sbjct:    7 LAVGLGKGHKVTKNEYKPRPSRRKGALSKHTRFVRDLIREVCGFAPFERRAMELLK---VSKDKRALKFIKKRLGTHLRGKRKRDELSNVLVAQRKAAA 102          
BLAST of CX300787 vs. ExPASy Swiss-Prot
Match: RL36_CAEEL (60S ribosomal protein L36 OS=Caenorhabditis elegans GN=rpl-36 PE=1 SV=3)

HSP 1 Score: 90.1225 bits (222), Expect = 3.757e-18
Identity = 44/89 (49.44%), Postives = 63/89 (70.79%), Query Frame = 1
Query:   61 GIAVGLKKGFPVTKREKIARPSSHKGKISKRTKLVRELISEVVGLSPYEKRLLDMLKTGGASSEKRMYKYAKRRLGTHRRALKKRDQVK 327
            G+AVGL KG   T+     R + HKG  SK+TK+VREL+ E+ G +PYE+R+L+ML+    S +KR  K+ KRR+GTHRRA  KR++++
Sbjct:    8 GLAVGLNKGHAATQLPVKQRQNRHKGVASKKTKIVRELVREITGFAPYERRVLEMLR---ISKDKRALKFLKRRIGTHRRAKGKREELQ 93          
BLAST of CX300787 vs. ExPASy Swiss-Prot
Match: RL36_ENTCP (60S ribosomal protein L36 OS=Enteromorpha compressa GN=RL36 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.865e-17
Identity = 45/96 (46.88%), Postives = 63/96 (65.62%), Query Frame = 1
Query:   64 IAVGLKKGFPVTKREKIARPSSHKGKISKRTKLVRELISEVVGLSPYEKRLLDMLKTGGASSEKRMYKYAKRRLGTHRRALKKRDQVKETYAKIRA 351
            IAVGL KG  VTK+    RPS  KG +S+R K VR ++ EV G +PYE+R++++LK G    +KR  K  KR+LGTH R  KKR+++     K++A
Sbjct:    4 IAVGLNKGHQVTKKAGTPRPSRRKGFLSQRVKKVRAVVREVAGWAPYERRVMELLKVG---KDKRALKMCKRKLGTHMRGKKKREEMAGVLRKMQA 96          
BLAST of CX300787 vs. ExPASy Swiss-Prot
Match: RL36_PONAB (60S ribosomal protein L36 OS=Pongo abelii GN=RPL36 PE=3 SV=3)

HSP 1 Score: 87.4261 bits (215), Expect = 2.435e-17
Identity = 44/99 (44.44%), Postives = 65/99 (65.66%), Query Frame = 1
Query:   64 IAVGLKKGFPVTKREKIARPSSHKGKISKRTKLVRELISEVVGLSPYEKRLLDMLKTGGASSEKRMYKYAKRRLGTHRRALKKRDQVKETYAKIRARAA 360
            +AVGL KG  VTK     R S  +G+++K TK VR++I EV G +PYE+R +++LK    S +KR  K+ K+R+GTH RA +KR+++    A +R  AA
Sbjct:    7 MAVGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLK---VSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRKAAA 102          
BLAST of CX300787 vs. ExPASy Swiss-Prot
Match: RL36_ICTPU (60S ribosomal protein L36 OS=Ictalurus punctatus GN=rpl36 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.435e-17
Identity = 44/99 (44.44%), Postives = 66/99 (66.67%), Query Frame = 1
Query:   64 IAVGLKKGFPVTKREKIARPSSHKGKISKRTKLVRELISEVVGLSPYEKRLLDMLKTGGASSEKRMYKYAKRRLGTHRRALKKRDQVKETYAKIRARAA 360
            +AVGLKKG PVTK     + S   G+++K +K VR++I EV G +PYE+R +++LK    S +KR  K+ K+R+GTH RA +KR+++    A +R  AA
Sbjct:    7 MAVGLKKGHPVTKNVTKPKHSRRGGRLTKHSKFVRDMIREVCGFAPYERRAMELLK---VSKDKRALKFIKKRVGTHIRAKRKREELSNILAAMRKAAA 102          
BLAST of CX300787 vs. ExPASy Swiss-Prot
Match: RL36_HUMAN (60S ribosomal protein L36 OS=Homo sapiens GN=RPL36 PE=1 SV=3)

HSP 1 Score: 87.4261 bits (215), Expect = 2.435e-17
Identity = 44/99 (44.44%), Postives = 65/99 (65.66%), Query Frame = 1
Query:   64 IAVGLKKGFPVTKREKIARPSSHKGKISKRTKLVRELISEVVGLSPYEKRLLDMLKTGGASSEKRMYKYAKRRLGTHRRALKKRDQVKETYAKIRARAA 360
            +AVGL KG  VTK     R S  +G+++K TK VR++I EV G +PYE+R +++LK    S +KR  K+ K+R+GTH RA +KR+++    A +R  AA
Sbjct:    7 MAVGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLK---VSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRKAAA 102          
BLAST of CX300787 vs. ExPASy Swiss-Prot
Match: RL36_CHICK (60S ribosomal protein L36 OS=Gallus gallus GN=RPL36 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.181e-17
Identity = 43/99 (43.43%), Postives = 65/99 (65.66%), Query Frame = 1
Query:   64 IAVGLKKGFPVTKREKIARPSSHKGKISKRTKLVRELISEVVGLSPYEKRLLDMLKTGGASSEKRMYKYAKRRLGTHRRALKKRDQVKETYAKIRARAA 360
            +AVGL KG+ VTK     R    +G+++K TK VR++I EV G +PYE+R +++LK    S +KR  K+ K+R+GTH RA +KR+++    A +R  AA
Sbjct:    7 MAVGLNKGYKVTKNVSKPRHCRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLK---VSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRKAAA 102          
The following BLAST results are available for this feature:
BLAST of CX300787 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
RL361_ARATH1.474e-2249.0760S ribosomal protein L36-1 OS=Arabidopsis thalian... [more]
RL363_ARATH2.514e-2250.4860S ribosomal protein L36-3 OS=Arabidopsis thalian... [more]
RL362_ARATH5.601e-2250.4960S ribosomal protein L36-2 OS=Arabidopsis thalian... [more]
RL36_IXOSC3.757e-1847.4760S ribosomal protein L36 OS=Ixodes scapularis GN=... [more]
RL36_CAEEL3.757e-1849.4460S ribosomal protein L36 OS=Caenorhabditis elegan... [more]
RL36_ENTCP1.865e-1746.8860S ribosomal protein L36 OS=Enteromorpha compress... [more]
RL36_PONAB2.435e-1744.4460S ribosomal protein L36 OS=Pongo abelii GN=RPL36... [more]
RL36_ICTPU2.435e-1744.4460S ribosomal protein L36 OS=Ictalurus punctatus G... [more]
RL36_HUMAN2.435e-1744.4460S ribosomal protein L36 OS=Homo sapiens GN=RPL36... [more]
RL36_CHICK3.181e-1743.4360S ribosomal protein L36 OS=Gallus gallus GN=RPL3... [more]

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Properties
Property NameValue
Genbank descriptionC08002C04SK PhyRootSw1 Citrus sinensis cDNA clone C08002C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300787 ID=CX300787; Name=CX300787; organism=Citrus sinensis; type=EST; length=404bp
TAACAACAAAGAGTTTTAGTTGTCAATCTAATCAATAAAATTACAAACAA
AATGAGTACTGGTATTGCCGTTGGATTAAAGAAGGGATTCCCTGTCACCA
AGAGAGAGAAGATCGCTCGTCCATCTTCTCATAAGGGAAAAATCTCCAAG
AGAACAAAGTTAGTTCGTGAATTGATCTCTGAAGTTGTTGGATTATCACC
TTACGAGAAGAGATTATTGGATATGTTAAAGACTGGTGGAGCCAGCTCTG
AGAAGAGAATGTACAAATATGCCAAGCGAAGATTGGGAACTCACAGAAGA
GCTCTTAAGAAGCGTGACCAAGTCAAGGAAACCTATGCCAAGATCAGAGC
CCGCGCTGCTATGGCATAAACCCTTTCAAATCACAACAAGCATAATCAAA
CATC
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