CX300783

Overview
NameCX300783
Unique NameCX300783
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length451
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300783 vs. ExPASy Swiss-Prot
Match: IF4A3_TAEGU (Eukaryotic initiation factor 4A-III OS=Taeniopygia guttata GN=EIF4A3 PE=2 SV=1)

HSP 1 Score: 265.388 bits (677), Expect = 7.976e-71
Identity = 123/150 (82.00%), Postives = 142/150 (94.67%), Query Frame = 1
Query:    1 ALGDFMNVQCHACIGGKSMGEDIRRLDYGVQVVSGTPGRVYDMIQRKNLRTRNIKMLIIDEADEMLNKGFIEQIYDIYRYLPPSTQVVIVSATLPQEVLEMTKKFMNEPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTI 450
            ALGD+MNVQCHACIGG ++GEDIR+LDYG  VV+GTPGRV+DMI+R++LRTR IKML++DEADEMLNKGF EQIYD+YRYLPP+TQVV++SATLP E+LEMT KFM +P++ILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTI
Sbjct:  127 ALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTI 276          
BLAST of CX300783 vs. ExPASy Swiss-Prot
Match: IF4A3_RAT (Eukaryotic initiation factor 4A-III OS=Rattus norvegicus GN=Eif4a3 PE=1 SV=1)

HSP 1 Score: 265.388 bits (677), Expect = 7.976e-71
Identity = 123/150 (82.00%), Postives = 142/150 (94.67%), Query Frame = 1
Query:    1 ALGDFMNVQCHACIGGKSMGEDIRRLDYGVQVVSGTPGRVYDMIQRKNLRTRNIKMLIIDEADEMLNKGFIEQIYDIYRYLPPSTQVVIVSATLPQEVLEMTKKFMNEPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTI 450
            ALGD+MNVQCHACIGG ++GEDIR+LDYG  VV+GTPGRV+DMI+R++LRTR IKML++DEADEMLNKGF EQIYD+YRYLPP+TQVV++SATLP E+LEMT KFM +P++ILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTI
Sbjct:  128 ALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTI 277          
BLAST of CX300783 vs. ExPASy Swiss-Prot
Match: IF4A3_PIG (Eukaryotic initiation factor 4A-III OS=Sus scrofa GN=EIF4A3 PE=2 SV=1)

HSP 1 Score: 265.388 bits (677), Expect = 7.976e-71
Identity = 123/150 (82.00%), Postives = 142/150 (94.67%), Query Frame = 1
Query:    1 ALGDFMNVQCHACIGGKSMGEDIRRLDYGVQVVSGTPGRVYDMIQRKNLRTRNIKMLIIDEADEMLNKGFIEQIYDIYRYLPPSTQVVIVSATLPQEVLEMTKKFMNEPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTI 450
            ALGD+MNVQCHACIGG ++GEDIR+LDYG  VV+GTPGRV+DMI+R++LRTR IKML++DEADEMLNKGF EQIYD+YRYLPP+TQVV++SATLP E+LEMT KFM +P++ILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTI
Sbjct:  128 ALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTI 277          
BLAST of CX300783 vs. ExPASy Swiss-Prot
Match: IF4A3_MOUSE (Eukaryotic initiation factor 4A-III OS=Mus musculus GN=Eif4a3 PE=2 SV=3)

HSP 1 Score: 265.388 bits (677), Expect = 7.976e-71
Identity = 123/150 (82.00%), Postives = 142/150 (94.67%), Query Frame = 1
Query:    1 ALGDFMNVQCHACIGGKSMGEDIRRLDYGVQVVSGTPGRVYDMIQRKNLRTRNIKMLIIDEADEMLNKGFIEQIYDIYRYLPPSTQVVIVSATLPQEVLEMTKKFMNEPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTI 450
            ALGD+MNVQCHACIGG ++GEDIR+LDYG  VV+GTPGRV+DMI+R++LRTR IKML++DEADEMLNKGF EQIYD+YRYLPP+TQVV++SATLP E+LEMT KFM +P++ILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTI
Sbjct:  128 ALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTI 277          
BLAST of CX300783 vs. ExPASy Swiss-Prot
Match: IF4A3_HUMAN (Eukaryotic initiation factor 4A-III OS=Homo sapiens GN=EIF4A3 PE=1 SV=4)

HSP 1 Score: 265.388 bits (677), Expect = 7.976e-71
Identity = 123/150 (82.00%), Postives = 142/150 (94.67%), Query Frame = 1
Query:    1 ALGDFMNVQCHACIGGKSMGEDIRRLDYGVQVVSGTPGRVYDMIQRKNLRTRNIKMLIIDEADEMLNKGFIEQIYDIYRYLPPSTQVVIVSATLPQEVLEMTKKFMNEPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTI 450
            ALGD+MNVQCHACIGG ++GEDIR+LDYG  VV+GTPGRV+DMI+R++LRTR IKML++DEADEMLNKGF EQIYD+YRYLPP+TQVV++SATLP E+LEMT KFM +P++ILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTI
Sbjct:  128 ALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTI 277          
BLAST of CX300783 vs. ExPASy Swiss-Prot
Match: IF4A3_CHICK (Eukaryotic initiation factor 4A-III OS=Gallus gallus GN=EIF4A3 PE=2 SV=1)

HSP 1 Score: 265.388 bits (677), Expect = 7.976e-71
Identity = 123/150 (82.00%), Postives = 142/150 (94.67%), Query Frame = 1
Query:    1 ALGDFMNVQCHACIGGKSMGEDIRRLDYGVQVVSGTPGRVYDMIQRKNLRTRNIKMLIIDEADEMLNKGFIEQIYDIYRYLPPSTQVVIVSATLPQEVLEMTKKFMNEPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTI 450
            ALGD+MNVQCHACIGG ++GEDIR+LDYG  VV+GTPGRV+DMI+R++LRTR IKML++DEADEMLNKGF EQIYD+YRYLPP+TQVV++SATLP E+LEMT KFM +P++ILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTI
Sbjct:  129 ALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTI 278          
BLAST of CX300783 vs. ExPASy Swiss-Prot
Match: IF4A3_BOVIN (Eukaryotic initiation factor 4A-III OS=Bos taurus GN=EIF4A3 PE=2 SV=3)

HSP 1 Score: 265.388 bits (677), Expect = 7.976e-71
Identity = 123/150 (82.00%), Postives = 142/150 (94.67%), Query Frame = 1
Query:    1 ALGDFMNVQCHACIGGKSMGEDIRRLDYGVQVVSGTPGRVYDMIQRKNLRTRNIKMLIIDEADEMLNKGFIEQIYDIYRYLPPSTQVVIVSATLPQEVLEMTKKFMNEPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTI 450
            ALGD+MNVQCHACIGG ++GEDIR+LDYG  VV+GTPGRV+DMI+R++LRTR IKML++DEADEMLNKGF EQIYD+YRYLPP+TQVV++SATLP E+LEMT KFM +P++ILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTI
Sbjct:  128 ALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTI 277          
BLAST of CX300783 vs. ExPASy Swiss-Prot
Match: FAL1_USTMA (ATP-dependent RNA helicase FAL1 OS=Ustilago maydis GN=FAL1 PE=3 SV=1)

HSP 1 Score: 265.003 bits (676), Expect = 1.042e-70
Identity = 123/150 (82.00%), Postives = 143/150 (95.33%), Query Frame = 1
Query:    1 ALGDFMNVQCHACIGGKSMGEDIRRLDYGVQVVSGTPGRVYDMIQRKNLRTRNIKMLIIDEADEMLNKGFIEQIYDIYRYLPPSTQVVIVSATLPQEVLEMTKKFMNEPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTI 450
            ALGD++NVQCHACIGG S+GEDIR+LDYG  +VSGTPGRVYDMI+R++LRT+NIKMLI+DE+DE+LN GF +QIYD+YRYLPPSTQVV++SATLPQ+VLEMT KFM +PV+ILVKRDELTLEGIKQFFVAVE+EEWKFDTLCDLYDTLTI
Sbjct:  114 ALGDYLNVQCHACIGGTSVGEDIRKLDYGQHIVSGTPGRVYDMIRRRHLRTKNIKMLILDESDELLNMGFKDQIYDVYRYLPPSTQVVLLSATLPQDVLEMTSKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTI 263          
BLAST of CX300783 vs. ExPASy Swiss-Prot
Match: IF4A3_MACFA (Eukaryotic initiation factor 4A-III OS=Macaca fascicularis GN=EIF4A3 PE=2 SV=3)

HSP 1 Score: 263.848 bits (673), Expect = 2.321e-70
Identity = 122/149 (81.88%), Postives = 141/149 (94.63%), Query Frame = 1
Query:    4 LGDFMNVQCHACIGGKSMGEDIRRLDYGVQVVSGTPGRVYDMIQRKNLRTRNIKMLIIDEADEMLNKGFIEQIYDIYRYLPPSTQVVIVSATLPQEVLEMTKKFMNEPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTI 450
            LGD+MNVQCHACIGG ++GEDIR+LDYG  VV+GTPGRV+DMI+R++LRTR IKML++DEADEMLNKGF EQIYD+YRYLPP+TQVV++SATLP E+LEMT KFM +P++ILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTI
Sbjct:  129 LGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTI 277          
BLAST of CX300783 vs. ExPASy Swiss-Prot
Match: IF4A3_XENTR (Eukaryotic initiation factor 4A-III OS=Xenopus tropicalis GN=eif4a3 PE=2 SV=1)

HSP 1 Score: 263.462 bits (672), Expect = 3.031e-70
Identity = 122/150 (81.33%), Postives = 141/150 (94.00%), Query Frame = 1
Query:    1 ALGDFMNVQCHACIGGKSMGEDIRRLDYGVQVVSGTPGRVYDMIQRKNLRTRNIKMLIIDEADEMLNKGFIEQIYDIYRYLPPSTQVVIVSATLPQEVLEMTKKFMNEPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTI 450
            ALGD+MNVQCHACIGG ++GEDIR+LDYG  VV+GTPGRV+DMI+R++LRTR IKML++DEADEMLNKGF EQIYD+YRYLPP+TQV ++SATLP E+LEMT KFM +P++ILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTI
Sbjct:  132 ALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVCLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTI 281          
The following BLAST results are available for this feature:
BLAST of CX300783 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
IF4A3_TAEGU7.976e-7182.00Eukaryotic initiation factor 4A-III OS=Taeniopygia... [more]
IF4A3_RAT7.976e-7182.00Eukaryotic initiation factor 4A-III OS=Rattus norv... [more]
IF4A3_PIG7.976e-7182.00Eukaryotic initiation factor 4A-III OS=Sus scrofa ... [more]
IF4A3_MOUSE7.976e-7182.00Eukaryotic initiation factor 4A-III OS=Mus musculu... [more]
IF4A3_HUMAN7.976e-7182.00Eukaryotic initiation factor 4A-III OS=Homo sapien... [more]
IF4A3_CHICK7.976e-7182.00Eukaryotic initiation factor 4A-III OS=Gallus gall... [more]
IF4A3_BOVIN7.976e-7182.00Eukaryotic initiation factor 4A-III OS=Bos taurus ... [more]
FAL1_USTMA1.042e-7082.00ATP-dependent RNA helicase FAL1 OS=Ustilago maydis... [more]
IF4A3_MACFA2.321e-7081.88Eukaryotic initiation factor 4A-III OS=Macaca fasc... [more]
IF4A3_XENTR3.031e-7081.33Eukaryotic initiation factor 4A-III OS=Xenopus tro... [more]

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Properties
Property NameValue
Genbank descriptionC08002B12SK PhyRootSw1 Citrus sinensis cDNA clone C08002B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300783 ID=CX300783; Name=CX300783; organism=Citrus sinensis; type=EST; length=451bp
GCCTTAGGAGATTTTATGAATGTACAATGTCATGCTTGTATCGGTGGAAA
GAGTATGGGAGAGGACATTCGAAGATTAGACTACGGCGTACAAGTTGTTT
CAGGCACACCAGGTCGTGTTTATGATATGATACAGCGCAAAAATCTTCGA
ACAAGAAATATTAAGATGTTAATTATTGACGAAGCAGATGAAATGTTGAA
TAAAGGCTTCATAGAACAGATTTATGACATCTATCGCTACCTCCCTCCAA
GCACTCAAGTGGTCATTGTTTCCGCAACACTTCCGCAGGAGGTTTTAGAG
ATGACAAAGAAATTTATGAATGAGCCTGTTAAAATTTTGGTGAAGCGTGA
TGAACTTACATTAGAAGGCATTAAGCAATTCTTTGTGGCAGTGGAGCGTG
AGGAGTGGAAATTCGATACTTTATGTGATTTGTATGACACGCTAACGATC
A
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