CX300780

Overview
NameCX300780
Unique NameCX300780
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length233
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300780 vs. ExPASy Swiss-Prot
Match: DHSB2_ARATH (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial OS=Arabidopsis thaliana GN=SDH2-2 PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 4.136e-17
Identity = 43/73 (58.90%), Postives = 52/73 (71.23%), Query Frame = 3
Query:   15 LACLCYIDKASDTTTINPLPHMYVVKDLVTDLSNFYEQYKSIKPWLQIKEGEHHDLNKGEFLQSKEDRKKLDG 233
            LACL  I+  S  TTI PLPHM+V+KDLV D++NFY QYKSI+PWL+ K      +   E LQSK+DR KLDG
Sbjct:  119 LACLTKIESGSKETTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKNPA--SVPGKEILQSKKDRAKLDG 189          
BLAST of CX300780 vs. ExPASy Swiss-Prot
Match: DHSB_DROME (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Drosophila melanogaster GN=SdhB PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 9.214e-17
Identity = 41/74 (55.41%), Postives = 52/74 (70.27%), Query Frame = 3
Query:   15 LACLCYID-KASDTTTINPLPHMYVVKDLVTDLSNFYEQYKSIKPWLQIKEGEHHDLNKGEFLQSKEDRKKLDG 233
            LAC+  ID   S +  + PLPHMYVV+DLV D++NFYEQY++I+PWLQ K        K ++LQS EDR KLDG
Sbjct:  118 LACISKIDINTSKSLKVYPLPHMYVVRDLVPDMNNFYEQYRNIQPWLQRKNEAGEKKGKAQYLQSVEDRSKLDG 191          
BLAST of CX300780 vs. ExPASy Swiss-Prot
Match: DHSB1_ARATH (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 1, mitochondrial OS=Arabidopsis thaliana GN=SDH2-1 PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 2.053e-16
Identity = 42/73 (57.53%), Postives = 51/73 (69.86%), Query Frame = 3
Query:   15 LACLCYIDKASDTTTINPLPHMYVVKDLVTDLSNFYEQYKSIKPWLQIKEGEHHDLNKGEFLQSKEDRKKLDG 233
            LACL  I   +  TTI PLPHM+V+KDLV D++NFY QYKSI+PWL+ K      +   E LQSK+DR KLDG
Sbjct:  120 LACLTKIQDEASETTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKTPA--SVPAKEILQSKKDRAKLDG 190          
BLAST of CX300780 vs. ExPASy Swiss-Prot
Match: DHSB_USTMA (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Ustilago maydis GN=SDH2 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.681e-16
Identity = 42/73 (57.53%), Postives = 57/73 (78.08%), Query Frame = 3
Query:   15 LACLCYIDKASDTTTINPLPHMYVVKDLVTDLSNFYEQYKSIKPWLQIKEGEHHDLNKGEFLQSKEDRKKLDG 233
            LACLC IDK +DT  I PLPHMY+VKDLV DL+ FY+QY+SI+P+L+     ++  ++GE LQS E+R++LDG
Sbjct:  124 LACLCRIDKQNDTK-IYPLPHMYIVKDLVPDLTQFYKQYRSIEPFLK----SNNTPSEGEHLQSPEERRRLDG 191          
BLAST of CX300780 vs. ExPASy Swiss-Prot
Match: DHSB_DANRE (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Danio rerio GN=sdhb PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.972e-16
Identity = 45/74 (60.81%), Postives = 53/74 (71.62%), Query Frame = 3
Query:   15 LACLCYID-KASDTTTINPLPHMYVVKDLVTDLSNFYEQYKSIKPWLQIKEGEHHDLNKGEFLQSKEDRKKLDG 233
            LACL  ID   S  T I PLPHMYVVKDLV D+SNFY QYKSI+P+L  K+ +     K ++LQS EDR+KLDG
Sbjct:  110 LACLNKIDTNTSKVTKIYPLPHMYVVKDLVPDMSNFYAQYKSIEPYL--KKKDESQQGKQQYLQSVEDRQKLDG 181          
BLAST of CX300780 vs. ExPASy Swiss-Prot
Match: DHSB_CANGA (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Candida glabrata GN=SDH2 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.972e-16
Identity = 44/74 (59.46%), Postives = 55/74 (74.32%), Query Frame = 3
Query:   15 LACLCYIDK-ASDTTTINPLPHMYVVKDLVTDLSNFYEQYKSIKPWLQIKEGEHHDLNKGEFLQSKEDRKKLDG 233
            LACLC ID+  S TT I PLPHM++VKDLV DL+ FY+QYKSI+P+LQ  +   +  +  E LQS +DRKKLDG
Sbjct:   92 LACLCKIDQDESKTTKIYPLPHMFIVKDLVPDLTGFYQQYKSIQPYLQRTD---YPADGKEVLQSIDDRKKLDG 162          
BLAST of CX300780 vs. ExPASy Swiss-Prot
Match: DHSB_CHICK (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Gallus gallus GN=SDHB PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.019e-15
Identity = 46/74 (62.16%), Postives = 53/74 (71.62%), Query Frame = 3
Query:   15 LACLCYIDK-ASDTTTINPLPHMYVVKDLVTDLSNFYEQYKSIKPWLQIKEGEHHDLNKGEFLQSKEDRKKLDG 233
            LAC   ID   S TT I PLPHMYVVKDLV DLSNFY QYKSI+P+L  K+ +     K ++LQS EDR+KLDG
Sbjct:  121 LACTKKIDPDLSKTTKIYPLPHMYVVKDLVPDLSNFYAQYKSIEPYL--KKKDESKQGKEQYLQSIEDRQKLDG 192          
BLAST of CX300780 vs. ExPASy Swiss-Prot
Match: DHSB_ASHGO (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Ashbya gossypii GN=SDH2 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.738e-15
Identity = 47/74 (63.51%), Postives = 54/74 (72.97%), Query Frame = 3
Query:   15 LACLCYIDKASDTTT-INPLPHMYVVKDLVTDLSNFYEQYKSIKPWLQIKEGEHHDLNKGEFLQSKEDRKKLDG 233
            LACLC ID+A +    I PLPHMYVVKDLV DL+NFY+QYKSI+P+LQ K  +  D    E LQS  DRKKLDG
Sbjct:  100 LACLCKIDQAENKDVKIYPLPHMYVVKDLVPDLTNFYKQYKSIQPYLQ-KASKPAD--GREHLQSIADRKKLDG 170          
BLAST of CX300780 vs. ExPASy Swiss-Prot
Match: DHSB_RECAM (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit OS=Reclinomonas americana GN=SDH2 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.056e-15
Identity = 41/73 (56.16%), Postives = 52/73 (71.23%), Query Frame = 3
Query:   15 LACLCYIDKASDTTTINPLPHMYVVKDLVTDLSNFYEQYKSIKPWLQIKEGEHHDLNKGEFLQSKEDRKKLDG 233
            LAC+  ID       I PLPHM+++KDLV DLSNFY QYKSI+PW++  E +   L+K EF QS+ DR+KLDG
Sbjct:   79 LACIKSIDTNKKEMKIYPLPHMHIIKDLVPDLSNFYAQYKSIEPWMKTTEKK---LDK-EFYQSRNDREKLDG 147          
BLAST of CX300780 vs. ExPASy Swiss-Prot
Match: DHSB_XENTR (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Xenopus tropicalis GN=sdhb PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.603e-15
Identity = 44/74 (59.46%), Postives = 51/74 (68.92%), Query Frame = 3
Query:   15 LACLCYID-KASDTTTINPLPHMYVVKDLVTDLSNFYEQYKSIKPWLQIKEGEHHDLNKGEFLQSKEDRKKLDG 233
            LAC   ID   S  + I PLPHMYVVKDLV DLSNFY QYKSI+P+L+ K+       K ++LQS EDR KLDG
Sbjct:  115 LACTVRIDTNLSKVSKIYPLPHMYVVKDLVPDLSNFYAQYKSIEPYLKKKDESQE--GKEQYLQSIEDRDKLDG 186          
The following BLAST results are available for this feature:
BLAST of CX300780 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
DHSB2_ARATH4.136e-1758.90Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]
DHSB_DROME9.214e-1755.41Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]
DHSB1_ARATH2.053e-1657.53Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]
DHSB_USTMA2.681e-1657.53Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]
DHSB_DANRE5.972e-1660.81Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]
DHSB_CANGA5.972e-1659.46Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]
DHSB_CHICK1.019e-1562.16Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]
DHSB_ASHGO1.738e-1563.51Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]
DHSB_RECAM5.056e-1556.16Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]
DHSB_XENTR6.603e-1559.46Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]

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Properties
Property NameValue
Genbank descriptionC08002B09SK PhyRootSw1 Citrus sinensis cDNA clone C08002B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300780 ID=CX300780; Name=CX300780; organism=Citrus sinensis; type=EST; length=233bp
TTCGGCACGAGGCCTTAGCCTGTTTATGTTACATTGATAAAGCCAGTGAC
ACTACCACTATTAATCCTTTACCTCACATGTATGTGGTGAAAGATTTAGT
GACTGATTTATCAAACTTTTATGAACAATATAAATCAATTAAGCCATGGT
TACAAATTAAAGAAGGAGAACACCATGATTTAAATAAAGGTGAATTCTTA
CAATCAAAAGAAGATCGTAAGAAATTAGATGGA
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