CX300777

Overview
NameCX300777
Unique NameCX300777
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length405
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX300777 vs. ExPASy Swiss-Prot
Match: RS13_SOYBN (40S ribosomal protein S13 OS=Glycine max GN=RPS13 PE=2 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 1.190e-56
Identity = 105/130 (80.77%), Postives = 118/130 (90.77%), Query Frame = 1 
Query:   10 MGRMHSSGKGISKSALPYKRTPPSWLKVTATQVEDQVNKLAKRGLTPSQIGVILRDSHGVAQVKSVTGNKVLRILKKSGLAPAIPEDLYMLIKKAVAVRKHLERNRKDKDSKFRLILIESRIHRLARYYR 399
            MGRMHS GKGIS SALPYKRTPPSWLK+++  VE+ + K AK+GLTPSQIGVILRDSHG+AQV SVTG+K+LRILK  GLAP IPEDLY LIKKAV++RKHLERNRKDKDSKFRLIL+ESRIHRLARYY+
Sbjct:    1 MGRMHSRGKGISSSALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGIAQVNSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYK 130
[Close]
BLAST of CX300777 vs. ExPASy Swiss-Prot
Match: RS13_XENLA (40S ribosomal protein S13 OS=Xenopus laevis GN=rps13 PE=3 SV=2)

HSP 1 Score: 213.386 bits (542), Expect = 2.931e-55
Identity = 103/130 (79.23%), Postives = 120/130 (92.31%), Query Frame = 1 
Query:   10 MGRMHSSGKGISKSALPYKRTPPSWLKVTATQVEDQVNKLAKRGLTPSQIGVILRDSHGVAQVKSVTGNKVLRILKKSGLAPAIPEDLYMLIKKAVAVRKHLERNRKDKDSKFRLILIESRIHRLARYYR 399
            MGRMH+ GKG+S+SALPY+R+ P+WLK+T+  V++Q+ KLAK+GLTPSQIGVILRDSHGVAQV+ VTGNK+LRILK  GLAP +PEDLY LIKKAVAVRKHLERNRKDKD+KFRLILIESRIHRLARYY+
Sbjct:    1 MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYYK 130
[Close]
BLAST of CX300777 vs. ExPASy Swiss-Prot
Match: RS13_RAT (40S ribosomal protein S13 OS=Rattus norvegicus GN=Rps13 PE=2 SV=2)

HSP 1 Score: 213.386 bits (542), Expect = 2.931e-55
Identity = 103/130 (79.23%), Postives = 120/130 (92.31%), Query Frame = 1 
Query:   10 MGRMHSSGKGISKSALPYKRTPPSWLKVTATQVEDQVNKLAKRGLTPSQIGVILRDSHGVAQVKSVTGNKVLRILKKSGLAPAIPEDLYMLIKKAVAVRKHLERNRKDKDSKFRLILIESRIHRLARYYR 399
            MGRMH+ GKG+S+SALPY+R+ P+WLK+T+  V++Q+ KLAK+GLTPSQIGVILRDSHGVAQV+ VTGNK+LRILK  GLAP +PEDLY LIKKAVAVRKHLERNRKDKD+KFRLILIESRIHRLARYY+
Sbjct:    1 MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYYK 130
[Close]
BLAST of CX300777 vs. ExPASy Swiss-Prot
Match: RS13_MOUSE (40S ribosomal protein S13 OS=Mus musculus GN=Rps13 PE=1 SV=2)

HSP 1 Score: 213.386 bits (542), Expect = 2.931e-55
Identity = 103/130 (79.23%), Postives = 120/130 (92.31%), Query Frame = 1 
Query:   10 MGRMHSSGKGISKSALPYKRTPPSWLKVTATQVEDQVNKLAKRGLTPSQIGVILRDSHGVAQVKSVTGNKVLRILKKSGLAPAIPEDLYMLIKKAVAVRKHLERNRKDKDSKFRLILIESRIHRLARYYR 399
            MGRMH+ GKG+S+SALPY+R+ P+WLK+T+  V++Q+ KLAK+GLTPSQIGVILRDSHGVAQV+ VTGNK+LRILK  GLAP +PEDLY LIKKAVAVRKHLERNRKDKD+KFRLILIESRIHRLARYY+
Sbjct:    1 MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYYK 130
[Close]
BLAST of CX300777 vs. ExPASy Swiss-Prot
Match: RS13_HUMAN (40S ribosomal protein S13 OS=Homo sapiens GN=RPS13 PE=1 SV=2)

HSP 1 Score: 213.386 bits (542), Expect = 2.931e-55
Identity = 103/130 (79.23%), Postives = 120/130 (92.31%), Query Frame = 1 
Query:   10 MGRMHSSGKGISKSALPYKRTPPSWLKVTATQVEDQVNKLAKRGLTPSQIGVILRDSHGVAQVKSVTGNKVLRILKKSGLAPAIPEDLYMLIKKAVAVRKHLERNRKDKDSKFRLILIESRIHRLARYYR 399
            MGRMH+ GKG+S+SALPY+R+ P+WLK+T+  V++Q+ KLAK+GLTPSQIGVILRDSHGVAQV+ VTGNK+LRILK  GLAP +PEDLY LIKKAVAVRKHLERNRKDKD+KFRLILIESRIHRLARYY+
Sbjct:    1 MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYYK 130
[Close]
BLAST of CX300777 vs. ExPASy Swiss-Prot
Match: RS13_CHICK (40S ribosomal protein S13 OS=Gallus gallus GN=RPS13 PE=2 SV=3)

HSP 1 Score: 213.386 bits (542), Expect = 2.931e-55
Identity = 103/130 (79.23%), Postives = 120/130 (92.31%), Query Frame = 1 
Query:   10 MGRMHSSGKGISKSALPYKRTPPSWLKVTATQVEDQVNKLAKRGLTPSQIGVILRDSHGVAQVKSVTGNKVLRILKKSGLAPAIPEDLYMLIKKAVAVRKHLERNRKDKDSKFRLILIESRIHRLARYYR 399
            MGRMH+ GKG+S+SALPY+R+ P+WLK+T+  V++Q+ KLAK+GLTPSQIGVILRDSHGVAQV+ VTGNK+LRILK  GLAP +PEDLY LIKKAVAVRKHLERNRKDKD+KFRLILIESRIHRLARYY+
Sbjct:    1 MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYYK 130
[Close]
BLAST of CX300777 vs. ExPASy Swiss-Prot
Match: RS13_BOVIN (40S ribosomal protein S13 OS=Bos taurus GN=RPS13 PE=2 SV=3)

HSP 1 Score: 213.386 bits (542), Expect = 2.931e-55
Identity = 103/130 (79.23%), Postives = 120/130 (92.31%), Query Frame = 1 
Query:   10 MGRMHSSGKGISKSALPYKRTPPSWLKVTATQVEDQVNKLAKRGLTPSQIGVILRDSHGVAQVKSVTGNKVLRILKKSGLAPAIPEDLYMLIKKAVAVRKHLERNRKDKDSKFRLILIESRIHRLARYYR 399
            MGRMH+ GKG+S+SALPY+R+ P+WLK+T+  V++Q+ KLAK+GLTPSQIGVILRDSHGVAQV+ VTGNK+LRILK  GLAP +PEDLY LIKKAVAVRKHLERNRKDKD+KFRLILIESRIHRLARYY+
Sbjct:    1 MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYYK 130
[Close]
BLAST of CX300777 vs. ExPASy Swiss-Prot
Match: RS132_ARATH (40S ribosomal protein S13-2 OS=Arabidopsis thaliana GN=RPS13B PE=2 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 2.931e-55
Identity = 104/130 (80.00%), Postives = 116/130 (89.23%), Query Frame = 1 
Query:   10 MGRMHSSGKGISKSALPYKRTPPSWLKVTATQVEDQVNKLAKRGLTPSQIGVILRDSHGVAQVKSVTGNKVLRILKKSGLAPAIPEDLYMLIKKAVAVRKHLERNRKDKDSKFRLILIESRIHRLARYYR 399
            MGRMHS GKGIS SALPYKR+ PSWLK T+  V++ + K AK+GLTPSQIGVILRDSHG+ QVKSVTG+K+LRILK  GLAP IPEDLY LIKKAVA+RKHLERNRKDKDSKFRLIL+ESRIHRLARYY+
Sbjct:    1 MGRMHSRGKGISASALPYKRSSPSWLKTTSQDVDESICKFAKKGLTPSQIGVILRDSHGIPQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYK 130
[Close]
BLAST of CX300777 vs. ExPASy Swiss-Prot
Match: RS13_GILMI (40S ribosomal protein S13 OS=Gillichthys mirabilis GN=rps13 PE=2 SV=3)

HSP 1 Score: 213.001 bits (541), Expect = 3.828e-55
Identity = 103/130 (79.23%), Postives = 120/130 (92.31%), Query Frame = 1 
Query:   10 MGRMHSSGKGISKSALPYKRTPPSWLKVTATQVEDQVNKLAKRGLTPSQIGVILRDSHGVAQVKSVTGNKVLRILKKSGLAPAIPEDLYMLIKKAVAVRKHLERNRKDKDSKFRLILIESRIHRLARYYR 399
            MGRMH+ GKG+S+SALPY+R+ P+WLK+T+  V++Q+ KLAK+GLTPSQIGVILRDSHGVAQV+ VTGNK+LRILK  GLAP +PEDLY LIKKAVAVRKHLERNRKDKD+KFRLILIESRIHRLARYY+
Sbjct:    1 MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIFKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYYK 130
[Close]
BLAST of CX300777 vs. ExPASy Swiss-Prot
Match: RS131_ARATH (40S ribosomal protein S13-1 OS=Arabidopsis thaliana GN=RPS13A PE=2 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 4.999e-55
Identity = 104/130 (80.00%), Postives = 115/130 (88.46%), Query Frame = 1 
Query:   10 MGRMHSSGKGISKSALPYKRTPPSWLKVTATQVEDQVNKLAKRGLTPSQIGVILRDSHGVAQVKSVTGNKVLRILKKSGLAPAIPEDLYMLIKKAVAVRKHLERNRKDKDSKFRLILIESRIHRLARYYR 399
            MGRMHS GKGIS SALPYKR+ PSWLK T   V++ + K AK+GLTPSQIGVILRDSHG+ QVKSVTG+K+LRILK  GLAP IPEDLY LIKKAVA+RKHLERNRKDKDSKFRLIL+ESRIHRLARYY+
Sbjct:    1 MGRMHSRGKGISASALPYKRSSPSWLKTTPQDVDESICKFAKKGLTPSQIGVILRDSHGIPQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYK 130
The following BLAST results are available for this feature:
BLAST of CX300777 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
RS13_SOYBN1.190e-5680.7740S ribosomal protein S13 OS=Glycine max GN=RPS13 ... [more]
RS13_XENLA2.931e-5579.2340S ribosomal protein S13 OS=Xenopus laevis GN=rps... [more]
RS13_RAT2.931e-5579.2340S ribosomal protein S13 OS=Rattus norvegicus GN=... [more]
RS13_MOUSE2.931e-5579.2340S ribosomal protein S13 OS=Mus musculus GN=Rps13... [more]
RS13_HUMAN2.931e-5579.2340S ribosomal protein S13 OS=Homo sapiens GN=RPS13... [more]
RS13_CHICK2.931e-5579.2340S ribosomal protein S13 OS=Gallus gallus GN=RPS1... [more]
RS13_BOVIN2.931e-5579.2340S ribosomal protein S13 OS=Bos taurus GN=RPS13 P... [more]
RS132_ARATH2.931e-5580.0040S ribosomal protein S13-2 OS=Arabidopsis thalian... [more]
RS13_GILMI3.828e-5579.2340S ribosomal protein S13 OS=Gillichthys mirabilis... [more]
RS131_ARATH4.999e-5580.0040S ribosomal protein S13-1 OS=Arabidopsis thalian... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC08002B06SK PhyRootSw1 Citrus sinensis cDNA clone C08002B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300777 ID=CX300777; Name=CX300777; organism=Citrus sinensis; type=EST; length=405bp
TTAGAGAAGATGGGACGCATGCACTCTTCCGGAAAAGGGATTTCCAAATC
CGCCCTTCCATACAAACGAACTCCTCCTTCCTGGCTTAAGGTAACTGCCA
CCCAAGTCGAGGATCAAGTCAATAAGCTTGCCAAGCGTGGTTTAACTCCA
TCTCAAATTGGTGTTATCTTACGTGACTCTCATGGTGTTGCTCAAGTGAA
GAGCGTGACTGGTAACAAGGTTCTCAGAATTTTAAAGAAATCTGGATTAG
CTCCAGCTATCCCAGAAGATTTATATATGCTTATCAAGAAGGCTGTCGCC
GTCAGAAAGCACCTTGAAAGAAATAGAAAAGATAAGGACTCTAAGTTCAG
ATTAATCTTAATCGAGAGCAGAATCCACAGATTGGCTCGTTACTACCGTG
CTTCT
back to top