CX043932

Overview
NameCX043932
Unique NameCX043932
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length500
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043932 vs. ExPASy Swiss-Prot
Match: IMA_SOLLC (Importin subunit alpha OS=Solanum lycopersicum PE=2 SV=2)

HSP 1 Score: 166.777 bits (421), Expect = 5.048e-41
Identity = 85/142 (59.86%), Postives = 104/142 (73.24%), Query Frame = 1
Query:   73 MSLRPSTRAEVRKKGYKTGVXXXXXXXXXXXNLVEIRKNKREDNLLKKRREGXXXXXXXXXXDASQNAIEKNLESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWAL 498
            MSLRP++R E R+  YK  V           N+VEIRKNKRE+NLLKKRREG           A+ + ++K LE++P ++ GVWS+D +LQLE TTQFRKLLSIER+PPI+EVI++GVVPRFVEFL R D PQLQFEAAWAL
Sbjct:    1 MSLRPNSRTEARRSRYKVAVDAEEGRRRREDNMVEIRKNKREENLLKKRREGLLQAQQFPST-AAVSHLDKKLETLPELIAGVWSDDSSLQLECTTQFRKLLSIERNPPIEEVIQSGVVPRFVEFLARDDYPQLQFEAAWAL 141          
BLAST of CX043932 vs. ExPASy Swiss-Prot
Match: IMA1_ARATH (Importin subunit alpha-1 OS=Arabidopsis thaliana GN=KAP1 PE=2 SV=2)

HSP 1 Score: 164.851 bits (416), Expect = 1.918e-40
Identity = 85/142 (59.86%), Postives = 103/142 (72.54%), Query Frame = 1
Query:   73 MSLRPSTRAEVRKKGYKTGVXXXXXXXXXXXNLVEIRKNKREDNLLKKRREGXXXXXXXXXXDASQNAIEKNLESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWAL 498
            MSLRP+ + EVR+  YK  V           N+VEIRK+KRE++L+KKRREG           AS  +++K L+S+  MV GVWS+DPALQLE+TTQFRKLLSIERSPPI+EVI AGVVPRFVEFL + D P +QFEAAWAL
Sbjct:    1 MSLRPNAKTEVRRNRYKVAVDAEEGRRRREDNMVEIRKSKREESLMKKRREGMQALQGFP--SASAASVDKKLDSLKDMVAGVWSDDPALQLESTTQFRKLLSIERSPPIEEVISAGVVPRFVEFLKKEDYPAIQFEAAWAL 140          
BLAST of CX043932 vs. ExPASy Swiss-Prot
Match: IMA1A_ORYSJ (Importin subunit alpha-1a OS=Oryza sativa subsp. japonica GN=Os01g0253300 PE=1 SV=2)

HSP 1 Score: 162.925 bits (411), Expect = 7.289e-40
Identity = 86/142 (60.56%), Postives = 104/142 (73.24%), Query Frame = 1
Query:   73 MSLRPSTRAEVRKKGYKTGVXXXXXXXXXXXNLVEIRKNKREDNLLKKRREGXXXXXXXXXXDASQNAIEKNLESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWAL 498
            MSLRPS R EVR+  YK  V           N+VEIRK++RE++LLKKRREG           A+   ++K LES+P+M+ GV+S+D  LQLEATTQFRKLLSIERSPPI+EVI++GVVPRFV+FL R D PQLQFEAAWAL
Sbjct:    1 MSLRPSERVEVRRNRYKVAVDAEEGRRRREDNMVEIRKSRREESLLKKRREGLQAQAPVPASAAT--GVDKKLESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWAL 140          
BLAST of CX043932 vs. ExPASy Swiss-Prot
Match: IMA1B_ORYSJ (Importin subunit alpha-1b OS=Oryza sativa subsp. japonica GN=Os05g0155500 PE=1 SV=2)

HSP 1 Score: 158.303 bits (399), Expect = 1.795e-38
Identity = 85/146 (58.22%), Postives = 102/146 (69.86%), Query Frame = 1
Query:   73 MSLRPSTRAEVRKKGYKTGVXXXXXXXXXXXNLVEIRKNKREDNLLKKRREGXXXXXXXXXXD----ASQNAIEKNLESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWAL 498
            MSLRPS RAEVR+  YK  V           N+VEIRK++RE++LLKKRR+G               A  +A+++ LE +P+MVQ V S+D A+QLEATTQFRKLLSIERSPPI+EVI  GVVPRF+ FL R D PQLQFEAAWAL
Sbjct:    1 MSLRPSERAEVRRSRYKVAVDADEGRRRREDNMVEIRKSRREESLLKKRRDGLPAAAAAAAAASPLLAHSSALQQKLEGLPAMVQAVQSDDSAVQLEATTQFRKLLSIERSPPIEEVINTGVVPRFIAFLQREDYPQLQFEAAWAL 146          
BLAST of CX043932 vs. ExPASy Swiss-Prot
Match: IMA2_ARATH (Importin subunit alpha-2 OS=Arabidopsis thaliana GN=KAP2 PE=1 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 3.279e-32
Identity = 73/143 (51.05%), Postives = 93/143 (65.03%), Query Frame = 1
Query:   73 MSLRPSTRAEVRKKGYKTGVXXXXXXXXXXXNLVEIRKNKREDNLLKKR-REGXXXXXXXXXXDASQNAIEKNLESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWAL 498
            MSLRPS + EVR+  YK  V           NLVEIRKNKRE+NL KKR              +   ++  +  +++P+MV G+WSED   QLEAT   RKLLSIE++PPI+EV+++GVVPR V+FL R D P+LQFEAAWAL
Sbjct:    1 MSLRPSAKTEVRRNRYKVAVDAEEGRRRREDNLVEIRKNKREENLQKKRFTSSMAFGSATGQTEQDLSSANQLKDNLPAMVAGIWSEDSNSQLEATNLLRKLLSIEQNPPINEVVQSGVVPRVVKFLSRDDFPKLQFEAAWAL 143          
BLAST of CX043932 vs. ExPASy Swiss-Prot
Match: IMAB_DICDI (Importin subunit alpha-B OS=Dictyostelium discoideum GN=DDB_G0272318 PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 2.059e-26
Identity = 65/136 (47.79%), Postives = 84/136 (61.76%), Query Frame = 1
Query:   91 TRAEVRKKGYKTGVXXXXXXXXXXXNLVEIRKNKREDNLLKKRREGXXXXXXXXXXDASQNAIEKNLESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWAL 498
            ++ E RK  YK  +             + IRKNKRE++LLKKR +               + I + LE +PS+V  + SE+P L L++TT FRKLLSIE+SPPI+EVIK G+VPR V+FL   D PQLQFEAAWAL
Sbjct:    4 SKQETRKSQYKKSIDSDESRRKREEASLSIRKNKREESLLKKRTQAVPGSTPVKV----DSLINQRLEQLPSLVAEINSENPDLILKSTTAFRKLLSIEKSPPIEEVIKTGIVPRLVKFLYMQDFPQLQFEAAWAL 135          
BLAST of CX043932 vs. ExPASy Swiss-Prot
Match: IMA3_MOUSE (Importin subunit alpha-3 OS=Mus musculus GN=Kpna3 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 5.431e-19
Identity = 52/109 (47.71%), Postives = 69/109 (63.30%), Query Frame = 1
Query:  172 VEIRKNKREDNLLKKRREGXXXXXXXXXXDASQNAIEKNLESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWAL 498
            VE+RKNKR+++LLKKR             DA   A    LE+I   +Q   S++P +QL A    RKLLS +R+PPID++IK+G++P  V+ L R D P LQFEAAWAL
Sbjct:   34 VELRKNKRDEHLLKKRNVPQEESLEDSDVDADFKAQNVTLEAI---LQNATSDNPVVQLSAVQAARKLLSSDRNPPIDDLIKSGILPILVKCLERDDNPSLQFEAAWAL 139          
BLAST of CX043932 vs. ExPASy Swiss-Prot
Match: IMA3_HUMAN (Importin subunit alpha-3 OS=Homo sapiens GN=KPNA3 PE=1 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 5.431e-19
Identity = 52/109 (47.71%), Postives = 69/109 (63.30%), Query Frame = 1
Query:  172 VEIRKNKREDNLLKKRREGXXXXXXXXXXDASQNAIEKNLESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWAL 498
            VE+RKNKR+++LLKKR             DA   A    LE+I   +Q   S++P +QL A    RKLLS +R+PPID++IK+G++P  V+ L R D P LQFEAAWAL
Sbjct:   34 VELRKNKRDEHLLKKRNVPQEESLEDSDVDADFKAQNVTLEAI---LQNATSDNPVVQLSAVQAARKLLSSDRNPPIDDLIKSGILPILVKCLERDDNPSLQFEAAWAL 139          
BLAST of CX043932 vs. ExPASy Swiss-Prot
Match: IMA1_XENLA (Importin subunit alpha-1 OS=Xenopus laevis GN=kpna1 PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 6.004e-18
Identity = 45/109 (41.28%), Postives = 69/109 (63.30%), Query Frame = 1
Query:  172 VEIRKNKREDNLLKKRREGXXXXXXXXXXDASQNAIEKNLESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWAL 498
            VE+RK K+++ +LK+R               +  +++    S+  +VQG+ S DP  +L  T   RK+LS ER+PP++++I+AG++P+ VEFL RHD   LQFEAAWAL
Sbjct:   33 VELRKAKKDEQILKRRNVCLPEELILSPEKNAMQSVQVPPLSLEEIVQGMNSGDPENELRCTQAARKMLSRERNPPLNDIIEAGLIPKLVEFLSRHDNSTLQFEAAWAL 141          
BLAST of CX043932 vs. ExPASy Swiss-Prot
Match: IMA4_MOUSE (Importin subunit alpha-4 OS=Mus musculus GN=Kpna4 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.338e-17
Identity = 49/110 (44.55%), Postives = 67/110 (60.91%), Query Frame = 1
Query:  169 LVEIRKNKREDNLLKKRREGXXXXXXXXXXDASQNAIEKNLESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWAL 498
            +VE+RKNKR+++LLK+R             D        +LE+I   VQ   S++  +QL A    RKLLS +R+PPID++IK+G++P  V  L R D P LQFEAAWAL
Sbjct:   33 VVELRKNKRDEHLLKRRNVPQEDICEDSDIDGDYRVQNTSLEAI---VQNASSDNQGIQLSAVQAARKLLSSDRNPPIDDLIKSGILPILVHCLERDDNPSLQFEAAWAL 139          
The following BLAST results are available for this feature:
BLAST of CX043932 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
IMA_SOLLC5.048e-4159.86Importin subunit alpha OS=Solanum lycopersicum PE=... [more]
IMA1_ARATH1.918e-4059.86Importin subunit alpha-1 OS=Arabidopsis thaliana G... [more]
IMA1A_ORYSJ7.289e-4060.56Importin subunit alpha-1a OS=Oryza sativa subsp. j... [more]
IMA1B_ORYSJ1.795e-3858.22Importin subunit alpha-1b OS=Oryza sativa subsp. j... [more]
IMA2_ARATH3.279e-3251.05Importin subunit alpha-2 OS=Arabidopsis thaliana G... [more]
IMAB_DICDI2.059e-2647.79Importin subunit alpha-B OS=Dictyostelium discoide... [more]
IMA3_MOUSE5.431e-1947.71Importin subunit alpha-3 OS=Mus musculus GN=Kpna3 ... [more]
IMA3_HUMAN5.431e-1947.71Importin subunit alpha-3 OS=Homo sapiens GN=KPNA3 ... [more]
IMA1_XENLA6.004e-1841.28Importin subunit alpha-1 OS=Xenopus laevis GN=kpna... [more]
IMA4_MOUSE1.338e-1744.55Importin subunit alpha-4 OS=Mus musculus GN=Kpna4 ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS07_14D03_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14D03-H6-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043932 ID=CX043932; Name=CX043932; organism=Citrus sinensis; type=EST; length=500bp
CTCACTCTCCCTTAATCTCTCGTTCATTTCAAGATTTTGTAAAAAAAGCG
GAAGAAAGGCCGAAAGAACGACATGTCGTTGAGACCGAGCACGCGAGCGG
AGGTGAGGAAGAAGGGGTACAAAACGGGAGTCGATGCGGATGAGGCGCGG
CGGCGGAGAGAGGACAATCTGGTGGAGATCAGAAAGAACAAAAGGGAAGA
TAATTTGTTGAAGAAACGACGCGAAGGTCTCCTGCTTCAGCCTCAGCAAC
AACTCCTCGATGCCTCGCAAAACGCCATTGAAAAGAATTTGGAAAGTATT
CCTTCTATGGTACAAGGAGTGTGGTCTGAGGATCCTGCATTACAGTTGGA
AGCAACTACACAGTTTAGAAAGCTGTTATCAATTGAACGCAGCCCTCCAA
TTGATGAAGTAATTAAAGCTGGTGTTGTCCCACGCTTTGTGGAGTTTCTA
GGAAGGCATGATATGCCTCAACTACAATTTGAGGCTGCATGGGCATTGAC
back to top