CX300776

Overview
NameCX300776
Unique NameCX300776
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length423
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8769 contig Csv1_Contig8769:61..483. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX300776 vs. ExPASy Swiss-Prot
Match: TIC_ARATH (Protein TIME FOR COFFEE OS=Arabidopsis thaliana GN=TIC PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 6.060e-13
Identity = 43/81 (53.09%), Postives = 49/81 (60.49%), Query Frame = 3 
Query:   90 PVTHSNSGTSDPAKAVAAVS---NMKGGGLPSQGLVHAGQFATTQSSGKQHQLVPPGFPYVHAVPTAVQVKPAEQKQPAGE 323
            PVT + + TSDPAKA+AA S   NMKGGG                   +QHQL PPGF  VHAV +AVQVKP +QKQ AGE
Sbjct: 1484 PVTGAVTATSDPAKAIAAASAANNMKGGG--------------GMGKTQQHQLGPPGFTNVHAVSSAVQVKPVDQKQQAGE 1550
The following BLAST results are available for this feature:
BLAST of CX300776 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TIC_ARATH6.060e-1353.09Protein TIME FOR COFFEE OS=Arabidopsis thaliana GN... [more]
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Properties
Property NameValue
Genbank descriptionC08002B04SK PhyRootSw1 Citrus sinensis cDNA clone C08002B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300776 ID=CX300776; Name=CX300776; organism=Citrus sinensis; type=EST; length=423bp
TTTTCATCCAAAGGCATCGTGATCAACAGCTGCAGCAGCAGCCTGGCTCC
TCGGCAACTTCCTCTTCTGGGATGCTGTCATTATGTACGCCAGTTACTCA
TTCTAATTCGGGCACTTCTGATCCGGCCAAGGCTGTAGCTGCAGTTAGCA
ATATGAAAGGTGGTGGCTTGCCTTCACAGGGTCTTGTCCATGCTGGTCAA
TTTGCTACTACACAGTCTTCTGGGAAGCAACATCAGCTTGTTCCTCCTGG
CTTCCCATATGTTCATGCAGTTCCCACTGCGGTCCAGGTGAAACCAGCGG
AGCAGAAACAACCCGCTGGTGAGTAAGGATTGTGCCCTGGTGCCTTAAGC
TGCAACACTCATATAGGGAACAAAAAAATACATAGTGCCTAGTGAGATGA
ATTAGATTGCGGATGTATAAATT
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