CX043931

Overview
NameCX043931
Unique NameCX043931
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length579
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043931 vs. ExPASy Swiss-Prot
Match: NEP1_NEPGR (Aspartic proteinase nepenthesin-1 OS=Nepenthes gracilis GN=nep1 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.410e-17
Identity = 54/162 (33.33%), Postives = 79/162 (48.77%), Query Frame = -2
Query:  102 SLYYVNLLAIRVGRRVVDIPPGALQFNPTTGAGNII-DSGTVFTRLVAPAYTAVRDVFRRRVGSNLTVTSLGGFDTCYSVP-----IVAPTITLMFSGMNVTLPQDNLLIHSTAGSITCLAMAAAPDNVNSVLNVIANMQQQNHRILYDVPNSRLGVARELC 569
            + YY+ L  + VG   + I P A   N   G G II DSGT  T  V  AY +VR  F  ++   +   S  GFD C+  P     +  PT  + F G ++ LP +N  I S +  + CLAM ++       +++  N+QQQN  ++YD  NS +  A   C
Sbjct:  278 TFYYITLNGLSVGSTRLPIDPSAFALNSNNGTGGIIIDSGTTLTYFVNNAYQSVRQEFISQINLPVVNGSSSGFDLCFQTPSDPSNLQIPTFVMHFDGGDLELPSENYFI-SPSNGLICLAMGSSSQG----MSIFGNIQQQNMLVVYDTGNSVVSFASAQC 434          
BLAST of CX043931 vs. ExPASy Swiss-Prot
Match: NEP2_NEPGR (Aspartic proteinase nepenthesin-2 OS=Nepenthes gracilis GN=nep2 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.462e-14
Identity = 51/159 (32.08%), Postives = 73/159 (45.91%), Query Frame = -2
Query:  102 YYVNLLAIRVGRRVVDIPPGALQFNPTTGAGNIIDSGTVFTRLVAPAYTAVRDVFRRRVGSNLTVTSLGGFDTCYSVP-----IVAPTITLMFSGMNVTLPQDNLLIHSTAGSITCLAMAAAPDNVNSVLNVIANMQQQNHRILYDVPNSRLGVARELC 563
            YY+ L  I VG   + IP    Q       G IIDSGT  T L   AY AV   F  ++       S  G  TC+  P     +  P I++ F G  + L + N+LI S A  + CLAM ++       +++  N+QQQ  ++LYD+ N  +      C
Sbjct:  281 YYITLQGITVGGDNLGIPSSTFQLQDDGTGGMIIDSGTTLTYLPQDAYNAVAQAFTDQINLPTVDESSSGLSTCFQQPSDGSTVQVPEISMQFDGGVLNLGEQNILI-SPAEGVICLAMGSSS---QLGISIFGNIQQQETQVLYDLQNLAVSFVPTQC 435          
The following BLAST results are available for this feature:
BLAST of CX043931 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
NEP1_NEPGR2.410e-1733.33Aspartic proteinase nepenthesin-1 OS=Nepenthes gra... [more]
NEP2_NEPGR1.462e-1432.08Aspartic proteinase nepenthesin-2 OS=Nepenthes gra... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS07_14D03_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14D03-H6-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043931 ID=CX043931; Name=CX043931; organism=Citrus sinensis; type=EST; length=579bp
AATGGACAAACAAACCTCACGCGGCTAAAATTACCCATTACAGGACCCAC
AAGAAAAAGAGAAAACAAGTACAAACATATCTCACAATTCTATATCTAAG
TGCAAAGCTCACGGGCGACACCGAGCCTTGAATTGGGCACATCATAAAGG
ATTCTGTGGTTTTGTTGCTGCATATTGGCAATGACATTAAGCACTGAGTT
GACGTTGTCTGGAGCTGCAGCCATGGCCAAGCATGTGATGCTCCCTGCAG
TGCTGTGGATTAGAAGGTTGTCTTGTGGTAGAGTCACGTTCATGCCTGAG
AACATCAACGTGATTGTCGGCGCAACGATTGGGACCGAGTAGCACGTGTC
GAATCCGCCTAGGGATGTCACTGTTAAGTTACTCCCTACACGTCTACGGA
ACACGTCTCTCACTGCGGTGTAAGCTGGCGCCACCAGTCTGGTAAAAACT
GTGCCAGAATCAATAATATTGCCAGCGCCGGTTGTGGGATTGAACTGTAA
GGCACCAGGTGGGATATCAACAACTCTTCTGCCAACCCTAATGGCCAACA
AATTAACATAGTAAAGTGATGATCTTCTT
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